Family Search for PF13978 (DUF4223)

Running HMMer for PF13978

PF13978 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YhfL / b3369 DUF4223 domain-containing lipoprotein YhfL from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b3369 conserved secreted peptide from Escherichia coli str. K-12 substr. MG1655
Z4730 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 1:54 / 55 (98.2%), covers 100.0% of PF13978, 129.2 bits

• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b2605 b2701 b2742 b2809 b2813 b2833 b2865 b2963 b3150 b3163 b3267 b3369 b3661 b4149 b4189 b4288 1,177.4 P 2,142.5 P 75 P 45.55 P 48.6 P 107.7 P 136.6 P 126.4 P...”
• Clonal and antigenic analysis of serogroup A Neisseria meningitidis with particular reference to epidemiological features of epidemic meningitis in the People's Republic of China
  Wang, Infection and immunity 1992
  • “...IIb IIa, IIb IIa, IIb I Z4727, Z4728, Z4729, Z4730, Z4731, Z4732, B54, B516, B236 B303 B328, B506 Z3510, Z3515 Z3771, Z3786, Z3787 Z3905, Z3909 B503, Z3917,...”

PP1249 lipoprotein, putative from Pseudomonas putida KT2440
Aligns to 1:57 / 63 (90.5%), covers 100.0% of PF13978, 118.0 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023
• Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotoluene
  Fernández, Microbial biotechnology 2009
  • “...Conserved hypothetical protein 2.2 PP0319 Conserved hypothetical protein 3.1 PP1225 Radical activating enzyme 2.4 M PP1249 Lipoprotein, putative 3.5 PP2323 Conserved domain protein 2.4 PP3397 Hypothetical protein 2.4 M PP3642 Hypothetical protein 3.2 PP3679 Hypothetical protein 2.2 PP3704 Hypothetical protein 2.2 PP3782 Hypothetical protein 2.7 PP3783...”

PMI3460 lipoprotein from Proteus mirabilis HI4320
Aligns to 1:54 / 55 (98.2%), covers 98.1% of PF13978, 98.9 bits

• Transcriptional analysis of the MrpJ network: modulation of diverse virulence-associated genes and direct regulation of mrp fimbrial and flhDC flagellar operons in Proteus mirabilis
  Bode, Infection and immunity 2015
  • “...PMI1636 PMI1648 PMI1630 PMI1638 PMI1634 PMI1629 PMI1623 PMI1469 PMI3460 PMI3115 PMI1633 PMI1669 PMI1617 PMI1655 flhA fliL flgH fliF fliN fliJ fliE fliT fim8A...”
• Perturbation of FliL interferes with Proteus mirabilis swarmer cell gene expression and differentiation
  Cusick, Journal of bacteriology 2012
  • “...genes encoding multiple lipoproteins (PMI0993, PMI0994, PMI3460, PMI1840, PMI0743, and nlpA [PMI1318]), outer membrane proteins (PMI1359, PMI0842, PMI2950,...”
  • “...PMI1648 PMI1644 PMI1617 PMI1359 PMI1637 PMI1636 PMI2898 PMI3460 PMI1660 PMI1646 PMI0842 PMI0833 PMI1647 PMI0992 PMI2149 PMI0291 PMI1623 PMI1622 PMI1442 PMI1659...”
• Transcriptome of swarming Proteus mirabilis
  Pearson, Infection and immunity 2010
  • “...PMI1638 PMI1442 PMI1647 PMI0876 PMI1660 PMI1671 PMI1624 PMI3460 PMI0808 PMI2496 PMI1908 PMI3036 PMI1248 PMI1669 PMI1657 PMI1666 PMI0994 PMI1645 PMI1661 PMI1644...”
  • “...PMI1618 PMI1359 PMI1629 PMI2898 PMI1654 PMI1617 PMI1653 PMI3460 PMI2057 PMI1438 PMI1650 PMI1637 PMI1442 PMI0993 PMI1649 PMI1647 PMI1644 PMI1961 PMI0182 PMI1621...”

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