Family Search for PF14364 (DUF4408)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF14364 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
AT1G61260 hypothetical protein from Arabidopsis thaliana
Aligns to 40:72 / 344 (9.6%), covers 100.0% of PF14364, 61.6 bits
- GhCFE1A, a dynamic linker between the ER network and actin cytoskeleton, plays an important role in cotton fibre cell initiation and elongation
Lv, Journal of experimental botany 2015 - “...(POPTRDRAFT_811252), XP_002316932.1 (POPTRDRA FT_771875), NP_176321.2 (At1g61260); NP_200241.1 (At5g54300), KF018237 (CFE1A A1), KF018238 (CFE1D D5), KF018239...”
- “...POPTRDRAFT_811252, and POPTRDRAFT_771875), and Arabidopsis thaliana (At1g61260 and At5g54300). Accession numbers are listed in the Materials and methods....”
LOC116212884 uncharacterized protein LOC116212884 from Punica granatum
Aligns to 48:80 / 357 (9.2%), covers 100.0% of PF14364, 55.3 bits
- Transcriptional profiling of long non-coding RNAs regulating fruit cracking in Punica granatum L. under bagging
Wang, Frontiers in plant science 2022 - “...and DEGs. Among them, XR_004158164.1 co-regulated with ten DEGs (LOC116201766, LOC116202352, LOC116198068, LOC116202713, LOC116213464, LOC116212471, LOC116212884, LOC116206401, LOC116211848 and LOC116200280) involved in ethylene-activated signaling pathway, lignin catabolic process, lipid transport/binding, cutin biosynthetic process and cell wall. XR_004156395.1 co-regulated with six DEGs (LOC116214125, LOC116208411, LOC116212683, LOC116210477, LOC116207007...”
AT2G26110 hypothetical protein from Arabidopsis thaliana
Aligns to 40:71 / 309 (10.4%), covers 97.0% of PF14364, 46.5 bits
A0A3Q7F690 DUF4408 domain-containing protein from Solanum lycopersicum
Aligns to 37:68 / 308 (10.4%), covers 97.0% of PF14364, 45.5 bits
LOC106389377 pathogen-associated molecular patterns-induced protein A70-like from Brassica napus
Aligns to 2:32 / 375 (8.3%), covers 90.9% of PF14364, 45.4 bits
AT5G54300 hypothetical protein from Arabidopsis thaliana
Aligns to 44:76 / 326 (10.1%), covers 100.0% of PF14364, 42.3 bits
- Constructing Networks of Organelle Functional Modules in Arabidopsis
Penga, Current genomics 2016 - “...AT5G43150 AT3G50260 AT3G28340 AT2G26530 AT2G35710 AT5G26920 AT3G50760 AT1G66090 AT1G21790 AT3G46110 AT1G29330 AT1G72520 AT1G50740 AT1G77450 AT5G67210 AT5G54300 AT5G06320 AT1G73805 AT2G23810 AT5G63790 AT5G10695 AT5G63790 AT5G06320 AT3G48090 AT3G06500 AT2G17040 AT4G19120 AT5G56980 AT4G01950 AT2G22080 AT5G47910 AT4G23810 AT1G02390 AT1G76650 AT1G43910 AT1G27770 AT4G36500 AT2G46510 AT3G25600 AT1G61890 AT3G55840 AT5G59550 AT5G37770 AT5G66210 AT1G74430 AT2G20370...”
- GhCFE1A, a dynamic linker between the ER network and actin cytoskeleton, plays an important role in cotton fibre cell initiation and elongation
Lv, Journal of experimental botany 2015 - “...XP_002316932.1 (POPTRDRA FT_771875), NP_176321.2 (At1g61260); NP_200241.1 (At5g54300), KF018237 (CFE1A A1), KF018238 (CFE1D D5), KF018239 (CFE1A TM-1), KF018240...”
- “...and POPTRDRAFT_771875), and Arabidopsis thaliana (At1g61260 and At5g54300). Accession numbers are listed in the Materials and methods. (B) Phylogenetic analysis...”
- Arabidopsis extra large G-protein 2 (XLG2) interacts with the Gbeta subunit of heterotrimeric G protein and functions in disease resistance
Zhu, Molecular plant 2009 - “...1.35 247492_at At5g61890 unknown 0.48 1.50 * 248205_at At5g54300 unknown 0.50 1.10 246573_at At1g31680 copper amine oxidase-like 2.39 0.59 * 266590_at At2g46240...”
A70_ARATH / F4K956 Pathogen-associated molecular patterns-induced protein A70; PIG A70 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G56980 hypothetical protein from Arabidopsis thaliana
Aligns to 2:33 / 379 (8.4%), covers 93.9% of PF14364, 40.7 bits
- Candidate Domestication-Related Genes Revealed by Expression Quantitative Trait Loci Mapping of Narrow-Leafed Lupin (Lupinus angustifolius L.)
Plewiński, International journal of molecular sciences 2019 - “...Lup011836 (OIW03199.1), and Lup002110 (OIW20134.1) sequences. Lup011781 has been identified as a homolog of MHM17-10 (AT5G56980) gene. It is pathogen-associated molecular pattern-induced gene with unknown function, putatively participating in jasmonic acid pathway [ 78 ]. Lup011739 encodes a homolog of GALACTURONOSYLTRANSFERASE-LIKE 10 , which is involved...”
- “...NLL-10 51.4 18.4 53.5 0.71 galacturonosyltransferase 10-like, GAUT10 OIW03144.1 NLL-10 51.3 16.7 45.2 0.62 MHM17-10, AT5G56980 OIW03199.1 NLL-10 48.4 16.4 50.5 0.69 general transcription factor IIH subunit 2, GTF2H2 OIW03193.1 NLL-10 50.3 10.6 31.5 0.53 pentatricopeptide repeat-containing protein OIW20134.1 NLL-10 49.7 9.7 28.9 0.52 UDP-Glycosyltransferase 85A2,...”
- Constructing Networks of Organelle Functional Modules in Arabidopsis
Penga, Current genomics 2016 - “...AT1G50740 AT1G77450 AT5G67210 AT5G54300 AT5G06320 AT1G73805 AT2G23810 AT5G63790 AT5G10695 AT5G63790 AT5G06320 AT3G48090 AT3G06500 AT2G17040 AT4G19120 AT5G56980 AT4G01950 AT2G22080 AT5G47910 AT4G23810 AT1G02390 AT1G76650 AT1G43910 AT1G27770 AT4G36500 AT2G46510 AT3G25600 AT1G61890 AT3G55840 AT5G59550 AT5G37770 AT5G66210 AT1G74430 AT2G20370 AT3G08720 AT4G30280 AT3G15210 AT1G05170 AT4G18880 AT3G16720 AT4G23810 AT5G52750 AT4G14365 AT5G62020 AT4G35110...”
- RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary
Akiyama, Plant & cell physiology 2014 - “...provide examples of AT1G21600, which is a subunit in the plastid-encoded RNA polymerase complex, and AT5G56980, which is related to the jasmonic acid signaling pathway. Arabidopsis Database Gene function Mutant line Ontology Phenotype Introduction Arabidopsis thaliana is one of the most commonly used experimental plants, and...”
- “...genes and does not have known protein functions, including interaction, localization and enzyme activity. The AT5G56980 gene was found to encode an unknown protein that is disrupted and induced in the lines GT4800 and F21325, which were obtained as a loss-of-function line and a gain-of-function line,...”
- Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts
Perkins, Proceedings. Biological sciences 2013 - “...control of an early jasmonate-responsive promoter gene A70 (At5g56980) [35]. A bioluminescent LUC signal appeared around the feeding site in the elicited leaf...”
- “...control of an early JA-responsive promoter gene A70 (At5g56980) [35] were constructed as follows: Promega pGL4-11 was digested with Fse1, ends were polished...”
- Arabidopsis systemic immunity uses conserved defense signaling pathways and is mediated by jasmonates
Truman, Proceedings of the National Academy of Sciences of the United States of America 2007 - “...A70 depends on RPM1 recognition. RNA blots of A70 (At5g56980) accumulation 4 hpi in local or systemic tissues after virulent (D) or avirulent (avrRpm1) (R) P....”
- “...DC3000(avrRpm1) isolate. We identified one PIG, A70 (At5g56980), rapidly induced in systemic tissue after challenge with DC3000(avrRpm1) but not the compatible...”
AT1G11210 hypothetical protein from Arabidopsis thaliana
Aligns to 35:66 / 308 (10.4%), covers 97.0% of PF14364, 40.4 bits
- Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection
Procko, The Plant cell 2022 - “...Figure4B ). In addition to IQD22 , for eight of these genes ( AT4G19200 , AT1G11210 , ANTHOCYANINLESS 2 ( ANL2 ), HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE ( HCT ), AT1G22500 , HAT3 , AT1G70985 , and LHCB4.3 ) we had already generated transcriptional reporters ( Supplemental...”
- Frequency-based time-series gene expression recomposition using PRIISM
Rosa, BMC systems biology 2012 - “...decarboxylase, putative 3.43E-12 COS 17 AT3G17130 : Invertase/pectin methylesterase inhibitor family protein 4.21E-11 COS 18 AT1G11210 : Similar to unknown protein (TAIR: AT1G11220.1 ) 1.06E-10 COS 19 AT1G62570 : Flavin-monooxygenase Glucosinolates-Oxygenase 4 ( FMO GS-OX4 ) 3.24E-10 COS 20 AT2G16890: UDP-glucoronosyl/UDP-glucosyl transferase family protein 5.52E-10 COS...”
- Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action
Pandey, Molecular systems biology 2010 - “...that are ABAG-protein co-regulated in some manner, only five genes (At1g30290, At4g29750, At1g31150, At1g74720, and At1g11210) appear in both guard cell and leaf data sets, in contrast to 106 ABA-only regulated genes common to both systems. Does regulation at the level of the transcriptome recapitulate previously...”
- Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements
Lan, BMC bioinformatics 2007 - “...0.6912 0.8138 8 At3g10020 0.6850 0.8030 9 At3g16050 0.6778 0.8000 10 At4g18280 0.6673 0.7945 11 At1g11210 0.6636 0.7955 12 At5g64510 0.6514 0.7900 13 At3g09350 0.6412 0.7807 14 At5g42380 0.6357 0.7718 15 At3g44860 0.6278 0.7623 16 At1g73260 0.6252 0.7583 17 At1g16850 0.6186 0.7452 18 At1g78070 0.6185 0.7439...”
- “...normal response to temperature and NaCl. Our results also confirm that the other two genes, At1g11210 and At4g39675, are involved in a variety of stress responses (data not shown). The criteria used to choose candidate genes for subsequent biological analysis were: 1) the gene must be...”
LOC103951864 LOW QUALITY PROTEIN: pathogen-associated molecular patterns-induced protein A70 from Pyrus x bretschneideri
Aligns to 9:40 / 307 (10.4%), covers 87.9% of PF14364, 39.9 bits
- Transcriptomics analysis of field-droughted pear (Pyrus spp.) reveals potential drought stress genes and metabolic pathways
Yang, PeerJ 2022 - “...histidine-containing phosphotransfer protein 4, gene 16914 encoding protein NIM1-INTERACTING 1, and gene12366 encoding uncharacterized protein LOC103951864 ( Table 3 ). Genes that were highly expressed in irrigated samples but identified in drought samples included gene 27148 encoding GDL79_ARATH GDSL esterase/lipase At5g33370, gene 5286 encoding uncharacterized protein...”
- “...bretschneideri] gene 12366 2.59 3.46 6.12 9.01 4.27 0.14 0.22 0.7 0.24 0.32 uncharacterized protein LOC103951864 [Pyrus x bretschneideri] gene 1490 0.52 1.22 1.03 2.73 2.14 0.33 0 0.05 0.16 0.11 WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1 WRKY transcription factor 18...”
AT4G26130 hypothetical protein from Arabidopsis thaliana
Aligns to 2:33 / 286 (11.2%), covers 93.9% of PF14364, 37.9 bits
- The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana
Krahmer, Molecular & cellular proteomics : MCP 2022 - “...24 AT2G07360 TASH3 2769, 5085 9464, 8286 YQSTYEGYGSPIREEPPPPYSYSEPQSR 10 1.1E-02 2.6E-02 4.9E-02 3.7E-01 24 36 AT4G26130 unknown pr. 5416, 7652, 1518 7456 TTSIGDGGEEGVDDKASNFINK(FK) 3 1.4E-02 2.6E-02 5.3E-02 3.7E-01 24 40 AT1G44800 nodulin MtN21 7377 34568 SQELPITNVVK 1 4.4E-06 2.6E-02 6.5E-04 3.7E-01 28 52 AT2G46920 POL 7848...”
- Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers
Tarazona, Viruses 2019 - “..., LAP1 ), At3g02630 ( ACYL ACYL CARRIER PROTEIN (ACP) DESATURASE 5 , AAD5 ), At4g26130 (hypothetical protein described as a cotton fiber protein), At5g2107 (hypothetical protein described as a Fe 3+ di-citrate transport system permease), and At5g43940 ( ALCOHOL DEHYDROGENASE 2 ( ADH2 ), PARAQUAT...”
LOC4337397 uncharacterized protein LOC4337397 from Oryza sativa Japonica Group
Aligns to 57:87 / 291 (10.7%), covers 93.9% of PF14364, 32.6 bits
- Hub Gene Mining and Co-Expression Network Construction of Low-Temperature Response in Maize of Seedling by WGCNA
Yu, Genes 2023 - “...protease AED1 LOC100383295 CYP714B2 cytochrome P450 714B3 LOC100283004 LOC4334796 uncharacterized LOC100282551 LOC4336977 UDP-N-acetylglucosamine diphosphorylase LOC100275470 LOC4337397 uncharacterized LOC100191608 LOC4330180 HXXXD-type acyl-transferase family protein LOC100284786 - uncharacterized purple LOC100037802 LOC4334049 lox2 linoleate 9S-lipoxygenase2 LOC100285766 LOC4327677 IAA-amino acid hydrolase ILR1-like 4 LOC541856 - lox1 linoleate 9S-lipoxygenase1 LOC100272711 -...”
LOC100275470 uncharacterized protein LOC100275470 from Zea mays
Aligns to 46:77 / 232 (13.8%), covers 93.9% of PF14364, 31.0 bits
- Hub Gene Mining and Co-Expression Network Construction of Low-Temperature Response in Maize of Seedling by WGCNA
Yu, Genes 2023 - “...aspartyl protease AED1 LOC100383295 CYP714B2 cytochrome P450 714B3 LOC100283004 LOC4334796 uncharacterized LOC100282551 LOC4336977 UDP-N-acetylglucosamine diphosphorylase LOC100275470 LOC4337397 uncharacterized LOC100191608 LOC4330180 HXXXD-type acyl-transferase family protein LOC100284786 - uncharacterized purple LOC100037802 LOC4334049 lox2 linoleate 9S-lipoxygenase2 LOC100285766 LOC4327677 IAA-amino acid hydrolase ILR1-like 4 LOC541856 - lox1 linoleate 9S-lipoxygenase1 LOC100272711...”
AT5G50710 hypothetical protein from Arabidopsis thaliana
Aligns to 47:90 / 185 (23.8%), covers 84.8% of PF14364, 28.3 bits
Or search for genetic data about PF14364 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory