Family Search for PF14488 (DUF4434)

PF14488 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YbcH / b0567 DUF4434 domain-containing protein YbcH from Escherichia coli K-12 substr. MG1655 (see paper)
b0567 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P37325 Uncharacterized protein YbcH from Escherichia coli (strain K12)
Aligns to 21:292 / 296 (91.9%), covers 99.6% of PF14488, 235.1 bits

• Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
  Tucker, BMC microbiology 2007
  • “...orthologue rzpD b0556 yes -2.41 0.0001 orf, bacteriophage lambda endopeptidase homolog mem. disrpt. orthologue ybcH b0567 -3.17 0.0000 orf, hypothetical protein cusC b0572 yes -2.57 0.0002 outer mem. factor of CusABC Ag & Cu efflux system outer mem. orthologue cusF b0573 yes -4.06 0.0001 Ag &...”
  • “...genes gene b# ratio gene STM ID# ratio copA b0484 -2.37 copA STM0498 <2 ybcH b0567 -3.25 not present cusC b0572 -2.74 STM0350 STM0350 <2 cusF b0573 -4.13 not present cusA b0575 -3.33 STM0350 STM0350 <2 uspG b0607 -2.58 ybdQ STM0614 <2 yfiA b2597 -2.84 yfia...”
• A Novel Locally c-di-GMP-Controlled Exopolysaccharide Synthase Required for Bacteriophage N4 Infection of Escherichia coli
  Junkermeier, mBio 2021
  • “...NfrA as predicted by TPRpred ( 54 ) ( https://toolkit.tuebingen.mpg.de/tools/tprpred ). (E) YbcH (UniProt identifier P37325 ) lacks a cleavage site for the signal peptidase in the signal sequence (gray). (F) AlphaFold v2.0. predicts a TIM barrel-like structure (8-strand beta barrel surrounded by 7 -helixes) for...”

SSO3007 Conserved hypothetical protein from Sulfolobus solfataricus P2
Aligns to 21:205 / 597 (31.0%), covers 40.6% of PF14488, 34.0 bits

• High-level expression of thermostable cellulolytic enzymes in tobacco transplastomic plants and their use in hydrolysis of an industrially pretreated Arundo donax L. biomass
  Castiglia, Biotechnology for biofuels 2016 (no snippet)
• Macromolecular fingerprinting of sulfolobus species in biofilm: a transcriptomic and proteomic approach combined with spectroscopic analysis
  Koerdt, Journal of proteome research 2011
  • “...transcriptional regulator SSO3242 0.85 n.d. Superfamily I DNA and RNA helicases SSO1456 1.05 n.d. Endobeta-mannanase SSO3007 1.24 n.s. Aconitate hydratase ST0833 0.44 n.s. Undecaprenyl pyrophosphate ST1813 0.53 n.s. CRISPR-associated autoregulator, DevR- family ST0029 0.42 n.s a Fold changes correspond to the ratio of biofilm v/s planktonic....”
• Appendage-mediated surface adherence of Sulfolobus solfataricus
  Zolghadr, Journal of bacteriology 2010
  • “...and metabolism, such as a -mannosidase (SSO3007); LacS, a -galactosidase (SSO3019); two carbohydrate transporters (SSO3010/17); a glucose-1 dehydrogenase...”
  • “...in attached cellsa SSO3002 SSO3003 SSO3004 SSO3006 SSO3007 SSO3008 SSO3009 SSO3010 SSO3011 SSO3012 SSO3013 SSO3014 SSO3015 SSO3016 SSO3017 SSO3019 SSO3021...”

SiRe_2238 glycoside hydrolase 5 family protein from Saccharolobus islandicus REY15A
Aligns to 14:213 / 594 (33.7%), covers 53.7% of PF14488, 32.7 bits

• The archaeal KEOPS complex possesses a functional Gon7 homolog and has an essential function independent of the cellular t⁶A modification level
  Wu, mLife 2023
  • “...KI. To construct pGE Tm TsaD KI, the spacer was designed to target the endomannanase (SiRe_2238) and the fragment containing the homologous arms and Tm TsaD was inserted into the Sph I/ Bln I site of pGE. For construction of the vectors for the gene knockdown,...”

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