Family Search for PF16280 (DUF4928)

PF16280 hits 2 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PluTI Type II restriction enzyme recognizing GGCGCC, 5 from Photorhabdus luminescens
plu0599 No description from Photorhabdus luminescens subsp. laumondii TTO1
Aligns to 18:319 / 331 (91.2%), covers 100.0% of PF16280, 543.4 bits

• The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines
  Payelleville, Scientific reports 2018
  • “...) M.PluTORF0338 IPR001525, IPR029063, IPR018117, IPR031303 54918 Solitary plu0339 ,Vsr Cm5CWGG (motif VI) 361215362651 GI9 plu0599 M.PluTI IPR001525, IPR029063 42313 II/R-M plu0600 ,PluTI GGm5CGCC (motif VII) 679941682068 Core Genome plu1935 M.PluTORF1935 IPR002941, IPR029063, IPR001091, IPR002052 78939 II/R-M plu1934 , PluTORF1935 AGGCm4CT (motif IV) 23016112303698 RGP46 plu2709...”
  • “...family (Fig. S1 ), suggesting that this gene was ancestral in the genome. In contrast, plu0599, encoding M.PluTI 47 , is also located in the core genome (Table 1 )but only conserved in two other strains of Xenorhabdus and Photorhabdus (Fig. S1). Other P . luminescens...”
• A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI)
  Khan, Nucleic acids research 2010
  • “...DNA methyltransferase gene homolog, two genes of unknown functions and an open reading frame (ORF) (plu0599) encoding a protein with no detectable sequence similarity to any known protein. The ORF (plu0599) product showed DNA endonuclease activity, when expressed in a cell-free expression system. Subsequently, the protein,...”
  • “...as aberrant transposition and non-autonomous transposition. Biochemical and biological experiments (described later) demonstrated that the plu0599 (= pluTIR ) gene, which has no sequence similarity to any gene for any functionally or structurally characterized protein, encodes a restriction enzyme, designated R.PluTI, and that the plu0600 gene...”

Maqu_1714 hypothetical protein from Marinobacter aqueolei
Aligns to 2:178 / 181 (97.8%), covers 55.2% of PF16280, 134.0 bits

• A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI)
  Khan, Nucleic acids research 2010
  • “...future detailed analysis of sequencestructurefunction relationships ( 20 ). The R.PluTI family includes the protein Maqu_1714 from Marinobacter aquaeolei VT8, which is shorter than other members. Its sequence corresponds to the C-terminal part of other family members (residues 147322 of R.PluTI). Incidentally, the secondary structure of...”

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