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Family Search for PF16297 (DUF4939)

PF16297 hits 31 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q9D6I0 Protein LDOC1 from Mus musculus
Aligns to 2:112 / 112 (99.1%), covers 100.0% of PF16297, 209.6 bits

RTL8C_HUMAN / A6ZKI3 Retrotransposon Gag-like protein 8C; Mammalian retrotransposon derived protein 8C from Homo sapiens (Human) (see paper)
NP_001071639 retrotransposon Gag-like protein 8C from Homo sapiens
Aligns to 2:113 / 113 (99.1%), covers 100.0% of PF16297, 183.1 bits

LDOC1_HUMAN / O95751 Protein LDOC1; Leucine zipper protein down-regulated in cancer cells from Homo sapiens (Human) (see 2 papers)
NP_036449 protein LDOC1 from Homo sapiens
Aligns to 24:138 / 146 (78.8%), covers 96.4% of PF16297, 182.9 bits

RTL8B_HUMAN / Q17RB0 Retrotransposon Gag-like protein 8B; Mammalian retrotransposon derived protein 8B from Homo sapiens (Human) (see paper)
NP_001071641 retrotransposon Gag-like protein 8B from Homo sapiens
Aligns to 2:113 / 113 (99.1%), covers 99.1% of PF16297, 181.7 bits

RTL8A_HUMAN / Q9BWD3 Retrotransposon Gag-like protein 8A; Mammalian retrotransposon derived protein 8A from Homo sapiens (Human) (see paper)
Aligns to 2:113 / 113 (99.1%), covers 100.0% of PF16297, 181.7 bits

Q9D1F0 Protein LDOC1 from Mus musculus
Aligns to 5:113 / 113 (96.5%), covers 86.6% of PF16297, 175.0 bits

NP_001127793 retrotransposon Gag-like protein 8A isoform 2 from Homo sapiens
Aligns to 2:77 / 83 (91.6%), covers 56.2% of PF16297, 88.3 bits

RTL6_HUMAN / Q6ICC9 Retrotransposon Gag-like protein 6; Leucine zipper protein down-regulated in cancer cells-like; Mammalian retrotransposon-derived protein 6; Protein LDOC1L from Homo sapiens (Human) (see paper)
Aligns to 84:179 / 239 (40.2%), covers 73.2% of PF16297, 73.6 bits

RTL6_MOUSE / Q505G4 Retrotransposon Gag-like protein 6; Mammalian retrotransposon-derived protein 6; Protein LDOC1L; Protein Sushi-15E3 from Mus musculus (Mouse) (see 2 papers)
Aligns to 83:179 / 243 (39.9%), covers 73.2% of PF16297, 72.2 bits

NP_001277722 retrotransposon-derived protein PEG10 from Ovis aries
Aligns to 138:243 / 405 (26.2%), covers 74.1% of PF16297, 58.9 bits

NP_001103285 retrotransposon-derived protein PEG10 isoform 4 from Bos taurus
Aligns to 138:243 / 405 (26.2%), covers 74.1% of PF16297, 58.9 bits

PEG10_HUMAN / Q86TG7 Retrotransposon-derived protein PEG10; Embryonal carcinoma differentiation-regulated protein; Mammalian retrotransposon-derived protein 2; Myelin expression factor 3-like protein 1; MEF3-like protein 1; Paternally expressed gene 10 protein; Retrotransposon gag domain-containing protein 3; Retrotransposon-derived gag-like polyprotein; Ty3/Gypsy-like protein from Homo sapiens (Human) (see 17 papers)
Aligns to 58:165 / 708 (15.3%), covers 74.1% of PF16297, 58.4 bits

NP_001165908 retrotransposon-derived protein PEG10 isoform 3 from Homo sapiens
Aligns to 134:241 / 784 (13.8%), covers 74.1% of PF16297, 58.2 bits

F7G2J3 Retrotransposon Gag like 1 from Macaca mulatta
Aligns to 182:285 / 1359 (7.7%), covers 75.9% of PF16297, 55.7 bits

NP_001120696 retrotransposon-derived protein PEG10 isoform 3 from Sus scrofa
Aligns to 142:243 / 786 (13.0%), covers 70.5% of PF16297, 55.2 bits

XP_023484169 retrotransposon-like protein 1 from Equus caballus
Aligns to 168:270 / 1349 (7.6%), covers 75.0% of PF16297, 54.3 bits

XP_014957540 retrotransposon-like protein 1 from Ovis aries
Aligns to 168:271 / 1333 (7.8%), covers 75.9% of PF16297, 53.8 bits

NP_001035701 retrotransposon-derived protein PEG10 isoform 2 from Mus musculus
Aligns to 129:220 / 376 (24.5%), covers 68.8% of PF16297, 53.7 bits

NP_001128360 retrotransposon-like protein 1 from Homo sapiens
Aligns to 181:283 / 1358 (7.6%), covers 75.9% of PF16297, 52.7 bits

B9EK54 RTL1 protein from Homo sapiens
Aligns to 181:283 / 1358 (7.6%), covers 75.9% of PF16297, 52.6 bits

PEG10_MOUSE / Q7TN75 Retrotransposon-derived protein PEG10; MmPEG10; Embryonal carcinoma differentiation regulated protein; Mammalian retrotransposon-derived protein 2; Myelin expression factor 3; MyEF-3; Myelin expression factor 3-like protein 1; MEF3-like protein 1; Paternally expressed gene 10 protein; Retrotransposon gag domain-containing protein 3; Retrotransposon-derived gag-like polyprotein; Ty3/Gypsy-like protein from Mus musculus (Mouse) (see 10 papers)
Aligns to 130:220 / 958 (9.5%), covers 68.8% of PF16297, 51.7 bits

E9Q3F7 Paternally expressed 10 from Mus musculus
Aligns to 130:220 / 1005 (9.1%), covers 68.8% of PF16297, 51.6 bits

RTL3_HUMAN / Q8N8U3 Retrotransposon Gag-like protein 3; Zinc finger CCHC domain-containing protein 5 from Homo sapiens (Human) (see paper)
Aligns to 219:325 / 475 (22.5%), covers 74.1% of PF16297, 50.1 bits

NP_001127830 retrotransposon-like protein 1 from Sus scrofa
Aligns to 168:275 / 1357 (8.0%), covers 83.0% of PF16297, 48.1 bits

RTL5_HUMAN / Q5HYW3 Retrotransposon Gag-like protein 5; Retrotransposon gag domain-containing protein 4 from Homo sapiens (Human) (see paper)
Aligns to 138:231 / 569 (16.5%), covers 67.9% of PF16297, 47.1 bits

RTL5_MOUSE / Q5DTT4 Retrotransposon Gag-like protein 5; Retrotransposon gag domain-containing protein 4 from Mus musculus (Mouse) (see paper)
XP_006528164 retrotransposon Gag-like protein 5 isoform X1 from Mus musculus
Aligns to 141:237 / 599 (16.2%), covers 67.0% of PF16297, 45.3 bits

RTL1_MOUSE / Q7M732 Retrotransposon-like protein 1; Mammalian retrotransposon derived protein 1; Paternally expressed gene 11 protein; Retrotransposon-derived protein PEG11 from Mus musculus (Mouse) (see 3 papers)
NP_908998 retrotransposon-like protein 1 from Mus musculus
Aligns to 434:538 / 1744 (6.0%), covers 72.3% of PF16297, 44.8 bits

BOP_HUMAN / Q7L3V2 Protein Bop; BH3-only protein; Retrotransposon Gag-like protein 10 from Homo sapiens (Human) (see paper)
NP_078903 protein Bop from Homo sapiens
Aligns to 85:183 / 364 (27.2%), covers 71.4% of PF16297, 40.5 bits

An08g11200 uncharacterized protein from Aspergillus niger
Aligns to 172:266 / 496 (19.2%), covers 69.6% of PF16297, 31.8 bits

Z518_11416 uncharacterized protein from Rhinocladiella mackenziei CBS 650.93
Aligns to 37:146 / 372 (29.6%), covers 73.2% of PF16297, 31.7 bits

RTL3_MOUSE / Q6P1Y1 Retrotransposon Gag-like protein 3; Zinc finger CCHC domain-containing protein 5 from Mus musculus (Mouse) (see 2 papers)
Aligns to 289:397 / 553 (19.7%), covers 80.4% of PF16297, 30.3 bits

Or search for genetic data about PF16297 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory