Family Search for PF16586 (DUF5060)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF16586 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

TM0950 hypothetical protein from Thermotoga maritima MSB8
Aligns to 8:76 / 509 (13.6%), covers 98.6% of PF16586, 89.7 bits

• An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
  Conners, Journal of bacteriology 2005
  • “...a plausible role in pentose uptake or catabolism. TM0950, which is related to a hypothetical protein in Lactobacillus johnsonii (LJ1257), contains no known...”

LJ1257 hypothetical protein from Lactobacillus johnsonii NCC 533
Aligns to 3:70 / 510 (13.3%), covers 100.0% of PF16586, 88.5 bits

• An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
  Conners, Journal of bacteriology 2005
  • “...related to a hypothetical protein in Lactobacillus johnsonii (LJ1257), contains no known domains. However, LJ1257 is located in a gene cluster with similar...”

B7FZM8 DUF5060 domain-containing protein from Phaeodactylum tricornutum (strain CCAP 1055/1)
Aligns to 300:377 / 982 (7.9%), covers 82.9% of PF16586, 36.0 bits

• Comparative Proteomic Analysis of the Diatom Phaeodactylum tricornutum Reveals New Insights Into Intra- and Extra-Cellular Protein Contents of Its Oval, Fusiform, and Triradiate Morphotypes
  Chuberre, Frontiers in plant science 2022
  • “...only 3 were specific to the O morphotype: the protein B7G0Q2 (Phatr3_J20677) and the protein B7FZM8 (Phatr3_J35518) originated from bacteria whereas the protein B5Y4E4 (Phatr3_J33120) derived from Rhizaria. The percentage of secreted proteins originating from bacteria displays above 35% of the secretome independently of the morphotype....”

THTE_3372 DUF5060 domain-containing protein from Thermogutta terrifontis
Aligns to 62:153 / 756 (12.2%), covers 90.0% of PF16586, 33.7 bits

• Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches
  Elcheninov, Frontiers in microbiology 2017
  • “...They were probably replaced by several putative endomannanases/beta-mannosidases of GH5 family (THTE_1596, THTE_1734, THTE_3216, THTE_3333, THTE_3372, THTE_3386 and THTE_3787, Supplementary Figure S4 ), cleaving Man(14)GlcA linkages. Four of them (THTE_1596, THTE_3216, THTE_3333, and THTE_3386) were predicted to be extracellular. Transcriptomic analysis showed two genes THTE_3333 and...”

F6M085 cellulase (EC 3.2.1.4) from Desulfurococcaceae archaeon EBI-244 (see paper)
AEB53062.1 cellulase (EBI-244) (EC 3.2.1.4) (see protein)
Aligns to 137:227 / 842 (10.8%), covers 92.9% of PF16586, 30.0 bits

• Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase.
  Gavrilov, Frontiers in microbiology 2016
  • “...cellobiose This work 90 (single GH5) 5.5 (single GH5) Enrichment culture ( Ignisphaera ) Endoglucanase F6M085 GH new GH-A clan + possibly 3 unknown domains 109 5.5 Lichenan, Avicel, CMC, -glucan Graham et al., 2011 Sulfolobus solfataricus MT 4 (DSM 5833) Endoglucanase/xylanase Q97YG7 GH12 90 7.0...”

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