Family Search for PF17118 (DUF5105)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF17118 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YCDA_BACSU / O34538 Uncharacterized lipoprotein YcdA from Bacillus subtilis (strain 168) (see paper)
Aligns to 164:352 / 354 (53.4%), covers 100.0% of PF17118, 241.4 bits

• A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
  Albaum, Proteome science 2011
  • “...>0.99 <0.000001 741 O34833 <0.000001 0.007364 <0.000001 0.000001 827 O32076 <0.000001 0.000083 >0.99 <0.000001 1344 O34538 <0.000001 0.000020 0.977644 <0.000001 1616 P94565 <0.000001 >0.99 0.264667 0.000003 1033 P54466 <0.000001 0.003793 <0.000001 <0.000001 2382 P33166 <0.000001 <0.000001 0.067524 <0.000001 1605 P02968 <0.000001 0.000001 <0.000001 <0.000001 9369 P37809...”
  • “...<0.000001 <0.000001 1692 O32076 <0.000001 0.000083 >0.99 <0.000001 1344 P24141 0.000001 >0.99 <0.000001 <0.000001 1257 O34538 <0.000001 0.000020 0.977644 <0.000001 1616 P54535 0.000073 >0.99 <0.000001 <0.000001 2391 P54466 <0.000001 0.003793 <0.000001 <0.000001 2382 P02968 <0.000001 0.000001 <0.000001 <0.000001 9369 O31501 0.000036 0.006965 <0.000001 <0.000001 1681 P46920...”

lmo0791 lmo0791 from Listeria monocytogenes EGD-e
Aligns to 18:212 / 216 (90.3%), covers 100.0% of PF17118, 208.3 bits

• The VirAB ABC Transporter Is Required for VirR Regulation of Listeria monocytogenes Virulence and Resistance to Nisin
  Grubaugh, Infection and immunity 2018
  • “...Gene or locusa dltA dltB dltC dltD lmo0325 lmo0604 lmo0791 lmo0833 mprF lmo1744 anrA anrB lmo2156 lmo2177 lmo2439 lmo2708 Rli32 sRNA gene or locus names...”
  • “...increases in the transcription of the predicted ORF lmo0791 and of the pentose phosphate transporter subunit encoded by lmo2708. In contrast to the previous...”
• A systematic proteomic analysis of Listeria monocytogenes house-keeping protein secretion systems
  Halbedel, Molecular & cellular proteomics : MCP 2014
  • “...neo bla erm bgaB bla lacZ bla erm bgaB spoIIIAH (lmo0791) bla erm bgaB yukA (lmo0061) bla erm bgaB yqjG region bla erm bgaB yqjG (lmo1379) Phelp-yqjG neo...”
  • “...of the WXG100 secretion system, as well as the lmo0791 gene (LMS5) which encodes a distant homolog of the B. subtilis SpoIIIAH protein were constructed, too. B....”
• Inactivation of Lgt allows systematic characterization of lipoproteins from Listeria monocytogenes
  Baumgärtner, Journal of bacteriology 2007
  • “...12 13 14 15 16 17 Lmo2331 Lmo0181 Lmo2079 Lmo0945 Lmo0791 Lmo0047 Lmo1671 18 19 20 21 22 23 24 Western Western Lmo2636 Lmo1757 Lmo2431 Lmo0541 Lmo1847 Lmo1738...”
• Listeria monocytogenes surface proteins: from genome predictions to function
  Bierne, Microbiology and molecular biology reviews : MMBR 2007
  • “...Lmo0207 Lmo0255 Lmo0303 Lmo0324 Lmo0460 Lmo0510 Lmo0617 Lmo0791 Lmo0821 Lmo0953 Lmo1068 Lmo1265 Lmo1340 Lmo1649 Lmo1653 Lmo2079 Lmo2080 Lmo2416 Lmo2594 Lmo2595...”

LMOf2365_0808 hypothetical protein from Listeria monocytogenes str. 4b F2365
Aligns to 18:212 / 216 (90.3%), covers 100.0% of PF17118, 206.6 bits

• Transcriptomic Analysis of Listeria monocytogenes in Response to Bile Under Aerobic and Anaerobic Conditions
  Chakravarty, Frontiers in microbiology 2021
  • “...protein 13.7 5.9 LMOf2365_0511 Conserved hypothetical protein 13.6 5.3 LMOf2365_1087 Conserved hypothetical protein 12.1 3.9 LMOf2365_0808 Conserved hypothetical protein 11.2 3.1 LMOf2365_1179 Hypothetical protein 8.3 3.7 LMOf2365_2288 Conserved hypothetical protein 6.3 5.8 Changes in Transcript Levels in Response to Anaerobic Acidic Conditions In acidic conditions, transcript...”

SIR_1455 DUF5105 domain-containing protein from Streptococcus intermedius B196
Aligns to 181:374 / 378 (51.3%), covers 88.9% of PF17118, 50.7 bits

• A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria
  Whitney, eLife 2017
  • “...10.64 0.97 - Putative bacteriocin accessory protein SIR_1027 63.00 67.64 0.93 - Elongation Factor Tu SIR_1455 14.00 15.96 0.88 - - SIR_0758 13.00 15.20 0.86 - - SIR_1387 9.33 11.40 0.82 - Putative extracellular solute-binding protein SIR_0492 12.33 15.20 0.81 - Putative adhesion protein SIR_1033 17.67...”

GALLO_0814 hypothetical secreted protein from Streptococcus gallolyticus UCN34
Aligns to 244:409 / 421 (39.4%), covers 78.3% of PF17118, 34.3 bits

• Transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in interaction with THP-1 macrophage-like cells
  Grimm, PloS one 2017
  • “...0.34 n. r. Unknown function GALLO_0901 hypothetical protein n. r. -1.63 0.04 n. r. 0.32 GALLO_0814 hypothetical protein n. r. -1.25 0.04 n. r. 0.42 GALLO_1321 glutamate-rich protein GrpB -1.39 n. r. 0.01 0.38 n. r. transport system GALLO_1556 amino acid ABC transporter substrate-binding protein -1.89...”

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