Family Search for PF17236 (DUF5309)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF17236 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

orf7 / AAL85565.1 major head protein from Pseudomonas phage PaP3 (see paper)
NP_775251 major head protein from Pseudomonas phage PaP3
Aligns to 19:310 / 317 (92.1%), covers 100.0% of PF17236, 343.9 bits

• UFV-P2 as a member of the Luz24likevirus genus: a new overview on comparative functional genome analyses of the LUZ24-like phages
  Eller, BMC genomics 2014
  • “...BN425_ORF_07 [Pseudomonas phage vB_PaeP_p2-1 0_Or1] 1.26E-50 ORF69 Major capsid protein 38180..39133 - 34740 6.0 317 NP_775251 major head protein [Pseudomonas phage PaP3] & YP_001671935 major head protein [Pseudomonas phage LUZ24] 0; 0 ORF70 Scaffolding protein 39152..40138 - 36190 4.3 328 YP_001671936 scaffolding protein [Pseudomonas phage LUZ24]...”

CKC_03925, CKC_RS03775 DUF5309 domain-containing protein from Candidatus Liberibacter solanacearum CLso-ZC1
Aligns to 19:321 / 331 (91.5%), covers 99.6% of PF17236, 335.4 bits

• Interactions "Candidatus Liberibacter solanacearum"-Bactericera cockerelli: Haplotype Effect on Vector Fitness and Gene Expression Analyses
  Yao, Frontiers in cellular and infection microbiology 2016
  • “...protein 271 818 46 29 NONE CKC_RS03770 Hypothetical protein 730 615 111 347 AP064_03790 (96%) CKC_RS03775 Head protein 932 955 549 541 AP064_03795 (99%) CKC_RS03780 Hypothetical protein 993 881 249 552 AP064_03800 (98%) CKC_RS03785 Phage portal protein 959 922 276 526 AP064_03805 (99%) CKC_RS03790 DNA packaging...”
• Transcriptome analysis of "Candidatus Liberibacter solanacearum" in its psyllid vector, Bactericera cockerelli
  Ibanez, PloS one 2014
  • “...protein G fliG CKC_00530 F 96.5 103 5-GAAGTCGATCCTACGGCTATTG -3 CKC_00530 R 5-GAACACTTGCTCCAATTGATGG -3 Hypothetical protein CKC_03925 F 95.9 110 5-CGTATTACGCCAGAAGATACCC -3 CKC_03925 R 5-GCATTAGGACCAGGAGATGAAA -3 Hypothetical protein CKC_03935 F 95.8 103 5-AGAAGAGACGCTAGCAGAGA -3 CKC_03935 R 5-GACCGAAGAATGTCCCACTAC -3 Type I secretion system ATPase, PrtD CKC_02260 F 97.1...”

AP064_03795 DUF5309 domain-containing protein from Candidatus Liberibacter solanacearum
Aligns to 19:321 / 331 (91.5%), covers 99.6% of PF17236, 335.4 bits

• Interactions "Candidatus Liberibacter solanacearum"-Bactericera cockerelli: Haplotype Effect on Vector Fitness and Gene Expression Analyses
  Yao, Frontiers in cellular and infection microbiology 2016
  • “...Hypothetical protein 730 615 111 347 AP064_03790 (96%) CKC_RS03775 Head protein 932 955 549 541 AP064_03795 (99%) CKC_RS03780 Hypothetical protein 993 881 249 552 AP064_03800 (98%) CKC_RS03785 Phage portal protein 959 922 276 526 AP064_03805 (99%) CKC_RS03790 DNA packaging protein 939 937 307 615 AP064_03810 (99%)...”

ZMO0387 putative phage major head protein from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 7:298 / 304 (96.1%), covers 96.5% of PF17236, 306.0 bits

• A plasmid-free Zymomonas mobilis mutant strain reducing reactive oxygen species for efficient bioethanol production using industrial effluent of xylose mother liquor
  Geng, Frontiers in bioengineering and biotechnology 2022
  • “...results showed that among the 19 downregulated genes in ZMNP, eight genes ( ZMO0383 , ZMO0387 , ZMO0388 , ZMO0392 , ZMO0397 , ZMO0398 , ZMO0930 , ZMO1787 ) encode hypothetical proteins, four genes encode levansucrase ( ZMO0374 , ZMO0375 ), levansucrase regulator ( ZMO0934 )...”
• Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment
  Yi, Biotechnology for biofuels 2015
  • “...kinase), ZMO0177 (16S rRNA), ZMO0179 (fructose-bisphosphate aldolase), ZMO0367 (glucose-6-phosphate 1-dehydrogenase), ZMO0368 (6-phosphogluconate dehydrogenase), ZMO0369 (glucokinase), ZMO0387 (hpcH/hpaI aldolase), ZMO0543 (aconitate hydratase), ZMO0544 (isocitrate dehydrogenase), ZMO0567 (succinyl-CoA synthetase), ZMO0569 (succinate dehydrogenase), ZMO0997 (KDPG aldolase), ZMO1237 ( d -isomer specific 2-hydroxyacid dehydrogenase), ZMO1307 (fumarase), ZMO1360 (pyruvate decarboxylase), ZMO1478...”
• Towards an informative mutant phenotype for every bacterial gene
  Deutschbauer, Journal of bacteriology 2014
  • “...and ZMO0683 to ZMO0685) or encode components of prophage (ZMO0387 to ZMO0390 and ZMO0397 to ZMO0399). Given that we did not challenge the Z. mobilis mutant...”

CAPSD_BPE32 / B0FIH3 Major capsid protein; Gene product 11; gp11; Major head protein from Escherichia phage Phieco32 (Escherichia coli phage phi32) (see paper)
Aligns to 18:343 / 352 (92.6%), covers 98.9% of PF17236, 186.2 bits

• function: Assembles to form a prolate capsid of about 145 nm x 44 nm.

CAPSD_BPSK1 / P85987 Major capsid protein; Virion protein G from Serratia phage KSP100 (Serratia marcescens bacteriophage KSP100) (see paper)
Aligns to 15:289 / 306 (89.9%), covers 100.0% of PF17236, 185.8 bits

BC1894 hypothetical protein from Bacillus phage phBC6A51
NP_831667 Phage protein from Bacillus cereus ATCC 14579
BC_1894 DUF5309 family protein from Bacillus cereus ATCC 14579
Aligns to 126:366 / 374 (64.4%), covers 82.3% of PF17236, 113.7 bits

• Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus
  Madeira, Frontiers in microbiology 2017
  • “...PhaB Acetoacetyl-CoA reductase 2.53 Uncategorized NP_829927 BC0025 Unknown 2.67 NP_832675 BC2927 Prolyl endopeptidase 4.18 NP_831667 BC1894 Phage protein 2.84 NP_831673 BC1901 phage protein 2.43 NP_834610 BC4938 NADH dehydrogenase 2.03 NP_834043 BC0622 L-threonine 3-dehydrogenase 2.14 NP_830802 BC1016 Unknown 3.04 NP_834559 BC4860 Unknown 1.97 NP_829986 BC0105 Unknown 1.87...”
  • “...protein DIVIC 3.39 Uncategorized NP_831643 BC1870 Phage protein 1.30 NP_831665 BC1892 Phage protein 1.58 NP_831667 BC1894 Phage protein 1.89 1.70 NP_831675 BC1903 Phage protein 2.16 NP_832991 BC3251 Unknown 2.71 NP_835021 BC5360 Unknown 2.05 NP_830068 BC0200 Unknown 1.64 NP_832874 BC3133 Unknown 1.86 NP_833260 BC3527 Unknown 1.75 Exoproteins...”
• Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus
  Madeira, Frontiers in microbiology 2017
  • “...BC1317 PhaB Acetoacetyl-CoA reductase 2.53 Uncategorized NP_829927 BC0025 Unknown 2.67 NP_832675 BC2927 Prolyl endopeptidase 4.18 NP_831667 BC1894 Phage protein 2.84 NP_831673 BC1901 phage protein 2.43 NP_834610 BC4938 NADH dehydrogenase 2.03 NP_834043 BC0622 L-threonine 3-dehydrogenase 2.14 NP_830802 BC1016 Unknown 3.04 NP_834559 BC4860 Unknown 1.97 NP_829986 BC0105 Unknown...”
  • “...division protein DIVIC 3.39 Uncategorized NP_831643 BC1870 Phage protein 1.30 NP_831665 BC1892 Phage protein 1.58 NP_831667 BC1894 Phage protein 1.89 1.70 NP_831675 BC1903 Phage protein 2.16 NP_832991 BC3251 Unknown 2.71 NP_835021 BC5360 Unknown 2.05 NP_830068 BC0200 Unknown 1.64 NP_832874 BC3133 Unknown 1.86 NP_833260 BC3527 Unknown 1.75...”
• Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579
  Laouami, PloS one 2014
  • “...0,485 0,098 1,690 0,026 NP_831147.1 - BC_1366 SSEB protein 1,163 0,036 1,269 0,055 Phage-related proteins NP_831667.1 - BC_1894 Phage protein 3,023 0,014 1,358 0,286 NP_831632.1 - BC_1859 Phage protein 2,526 0,039 0,644 0,261 NP_831635.1 - BC_1862 Phage protein 1,714 0,027 0,761 0,302 NP_831673.1 - BC_1901 Phage...”
  • “...- BC_3728 NP_833453 DNA-binding protein HU N N 0,23 0,422 2,5 0,00 Other - BC_1984 NP_831667 Phage protein N N 3,113 0,134 4,77 0,01 - BC_1012 NP_830798 unknown N N 0,81 0,291 3,5 0,00 - BC_5360 NP_835021 unknown Y Y 0,299 0,134 2,38 0,00 - BC_0002...”
• Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579
  Laouami, PloS one 2014
  • “...1,690 0,026 NP_831147.1 - BC_1366 SSEB protein 1,163 0,036 1,269 0,055 Phage-related proteins NP_831667.1 - BC_1894 Phage protein 3,023 0,014 1,358 0,286 NP_831632.1 - BC_1859 Phage protein 2,526 0,039 0,644 0,261 NP_831635.1 - BC_1862 Phage protein 1,714 0,027 0,761 0,302 NP_831673.1 - BC_1901 Phage protein 1,727...”
  • “...metabolism-related protein, the subunit of F0F1 ATP synthase (AtpA), and three proteins of unknown function (BC_1894, BC_5360 and BC_4062) also showed a higher abundance level in the exoproteome of aerobically grown rex cells. Except for BC_1894, which was annotated as a prophage protein and thus could...”

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