Family Search for PF17257 (DUF5323)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF17257 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT5G17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) from Arabidopsis thaliana
Aligns to 31:92 / 106 (58.5%), covers 95.2% of PF17257, 123.8 bits

• Low dose ribosomal DNA P-loop mutation affects development and enforces autophagy in Arabidopsis
  Shanmugam, RNA biology 2024
  • “...proteins distinctly absent in ploop KD -/- seedlings. At Locus ID Protein Description Name 1 AT5G17870 plastid-specific 50S ribosomal protein 6 AtPSRP6 AT2G42530 cold regulated 15b AtCOR15B AT5G58110 chaperone binding; ATPase activators - AT5G20935 Chloroplast NADH dehydrogenase assembly protein AtCRR42 AT5G66550 Maf-like protein - AT3G10620 nudix...”
• The DNA methylation landscape of the root-knot nematode-induced pseudo-organ, the gall, in Arabidopsis, is dynamic, contrasting over time, and critically important for successful parasitism
  Silva, The New phytologist 2022
  • “...48 2.24 AT5G05250 Hypothetical protein CG 31 1.09 AT5G06195 Novel transcribed region CG 36 1.74 AT5G17870 PLASTIDSPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6) CHH 16 0.34 AT5G22650 HISTONE DEACETYLASE 2B (HD2B; HDT2) CG 27 0.43 AT5TE27225 MUTATOR AT5G24670 EMBRYO DEFECTIVE 2820 (EMB2820) CHH 22 0.65 AT5TE30560 HARBINGER...”
• Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
  Firmino, Plants (Basel, Switzerland) 2020
  • “...AT2G24090 plastid 50S bL35c RPL35 family + NA AT3G56910 plastid 50S cL37 PSRP-5 + NA AT5G17870 plastid 50S cL38 PSRP-6 + NA AT5G30510 plastid 30S bS1c RPS1 + NA ATCG00160 plastid 30S uS2c RPS2 + NA ATCG00800 plastid 30S uS3c RPS3aN + NA ATCG00380 plastid 30S...”
• The translational apparatus of plastids and its role in plant development
  Tiller, Molecular plant 2014
  • “...Atcg00760 Non-essential Fleischmann et al., 2011 psrp5 At3g56910 Knockdown viable Tiller et al., 2012 psrp6 At5g17870 Non-essential Tiller et al., 2012 Reverse genetic data for plants are from Arabidopsis (nucleus-encoded genes) and tobacco (plastid-encoded genes). Plastid genes are indicated in bold. All gene identifier codes are...”
• Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses
  Brenner, BMC plant biology 2012
  • “...1.12E-06 AT2G28190 a,P superoxide dismutase (Cu-Zn) (SODCP) CATMA5a16150 35 2.80 0.09 0.03 1.83E-06 5.98E-18 2.95E-05 AT5G17870 P plastid-specific ribosomal protein-related CATMA3a44603 29 2.71 0.12 0.00 4.68E-03 2.58E-21 5.67E-05 AT3G51600 w nonspecific lipid transfer protein 5 (LTP5) CATMA1a65310 37 4.44 0.14 0.01 3.01E-11 1.64E-29 2.54E-10 AT1G76080 P...”

B6SX84 Plastid-specific ribosomal protein 6 from Zea mays
Aligns to 38:99 / 121 (51.2%), covers 91.9% of PF17257, 120.8 bits

• iTRAQ-Based Proteomic Analysis Reveals Several Strategies to Cope with Drought Stress in Maize Seedlings
  Jiang, International journal of molecular sciences 2019
  • “...A0A1D6L313 3.9 2 1.92525 Peptidase A0A1D6PP97 12.4 2 0.69133125 Peptide chain release factor APG3 chloroplastic B6SX84 6.6 1 0.759125 Plastid-specific ribosomal protein 6 B6U471 56.7 34 0.7354625 Ribonucleoprotein A B6SJU8 19.1 2 0.7215 Ribosomal protein L15 J7LC26 40.8 7 0.76554375 Ribosomal protein S10 A0A096TUU6 63.4 206...”

PSRP6_SPIOL / P82411 Large ribosomal subunit protein cL38; 50S ribosomal protein 6, chloroplastic; CL25; Plastid-specific 50S ribosomal protein 6; PSRP-6 from Spinacia oleracea (Spinach) (see 2 papers)
Aligns to 38:99 / 116 (53.4%), covers 95.2% of PF17257, 119.0 bits

• function: Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.
  subunit: Component of the chloroplast large ribosomal subunit (LSU). Mature 70S chloroplast ribosomes of higher plants consist of a small (30S) and a large (50S) subunit. The 30S small subunit contains 1 molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33 different proteins.
• Cryo-EM structure of the large subunit of the spinach chloroplast ribosome
  Ahmed, Scientific reports 2016
  • “...P12230 137 137 38 PSRP5 g P27684 63142 79121 PSRP variant 5, pI=10.01 PSRP6 h P82411 48116 4893 pI=9.87 Protein residues and signal peptide positions are numbered according to the information present in Uniprot 66 , GenBank 67 and coordinates from PDB ID: 4V61 31 ....”

6eriAf / P82411 6eriAf (see paper)
Aligns to 1:47 / 47 (100.0%), covers 75.8% of PF17257, 98.5 bits

• Ligand: rna (6eriAf)

Or search for genetic data about PF17257 in the Fitness Browser