Family Search for PF19802 (DUF6285)

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PF19802 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

lvaB / Q88J57 LvaB from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
PP_2792 hypothetical protein from Pseudomonas putida KT2440
Aligns to 23:116 / 118 (79.7%), covers 98.9% of PF19802, 86.2 bits

• A metabolic pathway for catabolizing levulinic acid in bacteria
  Rand, Nature microbiology 2017
  • “...putida genomic DNA sequences retrieved from NCBI database, with the following designations: PP_2791, lvaA ; PP_2792, lvaB ; PP_2793, lvaC ; PP_2794, lvaD ; PP_2795, lvaE ; PP_2790, lvaR . 2 L of the Gibson reaction mixture was transformed into chemically competent E. coli DH5 cells...”
  • “...genomic DNA sequences retrieved from the NCBI database, with the following designations: PP_2791, lvaA ; PP_2792, lvaB ; PP_2793, lvaC ; PP_2794, lvaD ; PP_2795, lvaE ; PP_2790, lvaR . The E. coli LS5218 reference genome can be retrieved from the NCBI database under the following...”

DBX28_14850 DUF6285 domain-containing protein from Pseudomonas aeruginosa
Aligns to 23:116 / 118 (79.7%), covers 98.9% of PF19802, 78.2 bits

• Integrated Comparative Genomic Analysis and Phenotypic Profiling of Pseudomonas aeruginosa Isolates From Crude Oil
  Xu, Frontiers in microbiology 2020
  • “...3162052 3162819 CDS SDR family NAD(P)-dependent oxidoreductase + 1SD DBX28_14845 3162819 3163991 CDS acyl-CoA dehydrogenase DBX28_14850 3164042 3164398 CDS acyl-CoA dehydrogenase DBX28_14855 3164395 3165450 CDS phosphotransferase family protein DBX28_14860 3165647 3167599 CDS sigma-54-dependent Fis family transcriptional regulator DBX28_14865 3167665 3168168 CDS transcriptional regulator 1SD DBX28_14870 3168227...”

TTHB013 hypothetical protein from Thermus thermophilus HB8
Aligns to 23:111 / 116 (76.7%), covers 97.8% of PF19802, 76.3 bits

• Identification and characterization of preferred DNA-binding sites for the Thermus thermophilus transcriptional regulator FadR
  Lee, PloS one 2017
  • “...TTHB015 acyl-CoA dehydrogenase 224.3/143 1.6 0.212 4 10 TTHB014 phosphotransferase 137.6/64.9 2.1 0.365 5 11 TTHB013 hypothetical protein 149.8/106.5 1.4 0.445 6 TTHB012 phosphoglycerate mutase family protein 90.3/62.7 1.4 0.257 Y 1 ( 9 ) TTHA0390 hypothetical protein 154.9/87.1 1.8 0.203 2 10 TTHA0391 hypothetical protein...”

PA14_35980 putative acyl-CoA dehydrogenase from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 23:116 / 118 (79.7%), covers 98.9% of PF19802, 74.9 bits

• Parallel evolutionary paths to produce more than one Pseudomonas aeruginosa biofilm phenotype
  Thöming, NPJ biofilms and microbiomes 2020
  • “...2.9 PA14_35430 PA2254 pvcA 2.7 PA14_68440 PA5181 2.5 PA14_35460 PA2252 2.9 PA2958.1 PA2958.1 rgsA 3.7 PA14_35980 2.9 PA3964-PA3965 PA3964-PA3965 P24 3.6 PA14_37380 PA2097 2.4 PA4704.1 PA4704.1 prrF1 3.3 PA14_38210 PA2034 2.6 PA4704.2 PA4704.2 prrF2 2.8 PA14_38220 PA2033 2.6 PA4704-PA4705 PA4704-PA4705 prrH 3.1 PA14_38310 PA2027 3.3 The...”

TCCBUS3UF1_870 DUF6285 domain-containing protein from Thermus sp. CCB_US3_UF1
Aligns to 23:111 / 116 (76.7%), covers 95.6% of PF19802, 73.8 bits

• Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia
  Teh, Standards in genomic sciences 2015
  • “...and secretin-like protein (PilQ, TCCBUS3UF1_6320) were also identified. In addition, genes encoding competence proteins ComZ (TCCBUS3UF1_870), PilN (TCCBUS3UF1_6350), PilO (TCCBUS3UF1_6340), and PilW (TCCBUS3UF1_6330) were present in the chromosome of CCB_US3_UF1. The genes encoding PilM, PilN, PilO, PilW, and PilQ are found to cluster together in the...”

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