Family Search for PF20398 (DUF6691)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF20398 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

pmpB / CBY83978.1 DUF395-family membrane protein from Serratia sp. ATCC 39006 (see paper)
Aligns to 1:140 / 140 (100.0%), covers 97.9% of PF20398, 187.4 bits

NE2569 probable transmembrane protein from Nitrosomonas europaea ATCC 19718
Aligns to 1:143 / 155 (92.3%), covers 94.4% of PF20398, 172.9 bits

• Global transcriptional response of Nitrosomonas europaea to chloroform and chloromethane
  Gvakharia, Applied and environmental microbiology 2007
  • “...to the control cells. Transcripts for NE2570 and NE2569, which are annotated as encoding hypothetical transmembrane proteins, were also much higher in cells...”

ABBFA_001576 hypothetical protein from Acinetobacter baumannii AB307-0294
Aligns to 1:137 / 137 (100.0%), covers 95.1% of PF20398, 152.4 bits

• Polymyxin Resistance in Acinetobacter baumannii: Genetic Mutations and Transcriptomic Changes in Response to Clinically Relevant Dosage Regimens
  Cheah, Scientific reports 2016
  • “...0.80 1.29 0.76 1.24 0.038 ABBFA_001575 Hypothetical protein Transporter component 1.58 1.32 1.47 1.55 0.039 ABBFA_001576 Hypothetical protein Transporter component 1.53 1.44 1.52 1.69 0.047 ABBFA_001979 Hypothetical protein No matches 0.42 0.99 0.80 1.30 0.045 ABBFA_002011 Tautomerase enzyme family protein 0.81 1.70 0.92 1.21 0.037 ABBFA_002314...”

VCA0640 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 7:149 / 154 (92.9%), covers 95.1% of PF20398, 145.3 bits

• Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae
  Shikuma, Journal of bacteriology 2009
  • “...VC1749 VC1771 VC1781 VC1935 VC1946 VC2367 VCA0030 VCA0139 VCA0640 VCA0645 VCA0698 VCA0732 VCA0845 VCA0849 Function Ratio of gene expression in oscR mutant to...”

msr8615 hypothetical protein from Mesorhizobium loti MAFF303099
Aligns to 147:283 / 285 (48.1%), covers 90.1% of PF20398, 141.3 bits

• Global transcriptional response to heat shock of the legume symbiont Mesorhizobium loti MAFF303099 comprises extensive gene downregulation
  Alexandre, DNA research : an international journal for rapid publication of reports on genes and genomes 2014
  • “...acid reductase 4.98 mll4827 Chr J Endoribonuclease L-PSP 4.89 mlr2159 Chr K Transcriptional regulator 4.86 msr8615 Chr R Transporter component 4.82 msl3831 Chr Conserved hypothetical transmembrane protein 4.79 mlr9581 pMLb PRC-barrel protein 4.78 mll4607 Chr S Ku protein 4.66 mll1528 Chr S Small integral membrane protein...”

A1S_1877 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 1:120 / 120 (100.0%), covers 82.4% of PF20398, 139.6 bits

• The Response of Acinetobacter baumannii to Hydrogen Sulfide Reveals Two Independent Persulfide-Sensing Systems and a Connection to Biofilm Regulation
  Walsh, mBio 2020
  • “...sulfide:quinone oxidoreductase; TauE, a putative sulfite exporter; A1S_1711 , hsd , homoserine dehydrogenase; A1S_1878 , A1S_1877 , YeeE/YedE family transporter (COG2391) ( 37 ); BigR red , reduced BigR transcriptionally represses expression of its operon. We found that GSH is the major cellular thiol, followed by...”

Y765_XYLFA / Q9PFB3 Probable transporter XF_0765 from Xylella fastidiosa (strain 9a5c) (see paper)
Aligns to 7:144 / 146 (94.5%), covers 90.1% of PF20398, 138.2 bits

SMa1052 Conserved hypothetical protein from Sinorhizobium meliloti 1021
Aligns to 6:142 / 143 (95.8%), covers 90.1% of PF20398, 135.2 bits

• Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming
  Nogales, BMC genomics 2010
  • “...Transcriptional regulator, RpiR family 1,45 1,90 1,73 1,55 SMa0564 Putative dehydrogenase -0,45 -1,12 -0,83 2,78 SMa1052 Conserved hypothetical protein 1,01 1,24 0,51 1,56 SMa1077 ( nex18 ) c Nex18 Symbiotically induced conserved protein 1,16 0,81 0,44 2,76 SMa1078 Conserved hypothetical protein 1,89 1,74 0,28 1,93 SMa1079...”

C1GYM9 YeeE/YedE family integral membrane protein from Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01)
PAAG_03183 hypothetical protein from Paracoccidioides lutzii Pb01
Aligns to 280:418 / 420 (33.1%), covers 73.2% of PF20398, 81.6 bits

• AlphaFold predicts the most complex protein knot and composite protein knots.
  Brems, Protein science : a publication of the Protein Society 2022
  • “...is 173 aa and its knotted core extends from residue 39 to residue 157. Protein C1GYM9 (Figure 4 right) is uncharacterized, and no probable homologue could be identified using PDBeFold. It contains a 5 2 knot with a knotted core between residues 76 and 391 and...”
  • “...Both knots exhibit positive chirality. FIGURE 4 Structure and topology of proteins A0A0K0IQS9 (left) and C1GYM9 (right). Top: 3D structures predicted by AlphaFold. Bottom: Reduced representations to visualize the 5 1 and 5 2 knots in the left and right structure, respectively 5 TESTS OF ACCURACY...”
• Transcriptional profile of Paracoccidioides spp. in response to itraconazole
  da, BMC genomics 2014
  • “...-89 General secretion pathway protein. PAAG_05009 2.7e-60 -10 Family integral membrane protein ( IMP ) PAAG_03183 4.1e-50 +1 Hemolisyn-iii channel protein ( HLYiii ) PAAG_01871 6.0e-34 +3 Integral membrane MPV17 / PMP 22 PAAG_02868 6.6e-37 -2 Vesicular fusion protein ( SEC17 ) PAAG_06233 2.8e-77 -1 Biogenesis...”

Or search for genetic data about PF20398 in the Fitness Browser