Family Search for TIGR00001

TIGR00001 hits 77 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

8buu3 / P55874 8buu3 (see paper)
Aligns to 1:63 / 65 (96.9%), covers 98.4% of TIGR00001, 94.4 bits

• Ligand: rna (8buu3)

RL35_BACSU / P55874 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Bacillus subtilis (strain 168) (see paper)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 94.3 bits

• subunit: Part of the 50S ribosomal subunit.

8a3l2 / P0A7Q1 8a3l2 (see paper)
Aligns to 1:63 / 64 (98.4%), covers 100.0% of TIGR00001, 91.0 bits

• Ligand: rna (8a3l2)

RpmI / b1717 50S ribosomal subunit protein L35 from Escherichia coli K-12 substr. MG1655 (see 4 papers)
RL35_ECOLI / P0A7Q1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; Ribosomal protein A from Escherichia coli (strain K12) (see 9 papers)
rpmI / P0A7Q1 50S ribosomal subunit protein L35 from Escherichia coli (strain K12) (see 2 papers)
rpmI 50S ribosomal protein L35 from Escherichia coli K12 (see paper)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 90.9 bits

• subunit: Part of the 50S ribosomal subunit.

7f0d3 / A5U2Z9 Cryo-em structure of mycobacterium tuberculosis 50s ribosome subunit bound with clarithromycin (see paper)
Aligns to 1:62 / 62 (100.0%), covers 96.8% of TIGR00001, 89.1 bits

• Ligand: rna (7f0d3)

RK35_SPIOL / P23326 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic; CL35 from Spinacia oleracea (Spinach) (see 2 papers)
Aligns to 90:152 / 159 (39.6%), covers 100.0% of TIGR00001, 88.1 bits

• function: Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.
  subunit: Component of the chloroplast large ribosomal subunit (LSU). Mature 70S chloroplast ribosomes of higher plants consist of a small (30S) and a large (50S) subunit. The 30S small subunit contains 1 molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33 different proteins.

5nrg3 / Q2FXQ0 The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with rb02 (see paper)
Aligns to 1:63 / 65 (96.9%), covers 100.0% of TIGR00001, 87.5 bits

• Ligands: rna; manganese (ii) ion (5nrg3)

7m4v2 / B7I693 A. Baumannii ribosome-eravacycline complex: 50s (see paper)
Aligns to 1:62 / 63 (98.4%), covers 98.4% of TIGR00001, 85.0 bits

• Ligand: rna (7m4v2)

8a578 / P0A491 Cryo-em structure of hflxr bound to the listeria monocytogenes 50s ribosomal subunit. (see paper)
Aligns to 1:63 / 63 (100.0%), covers 96.8% of TIGR00001, 83.8 bits

• Ligand: rna (8a578)

8crx2 / A0A371N4N9 8crx2 (see paper)
Aligns to 1:63 / 67 (94.0%), covers 96.8% of TIGR00001, 81.7 bits

• Ligand: rna (8crx2)

6spb5 / A0A069QC44 Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in ul6 (see paper)
Aligns to 1:62 / 63 (98.4%), covers 96.8% of TIGR00001, 81.6 bits

• Ligand: rna (6spb5)

RK35_ARATH / Q8VZ55 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 75:137 / 145 (43.4%), covers 100.0% of TIGR00001, 79.5 bits

• subunit: Part of the 50S ribosomal subunit.
  disruption phenotype: Embryonic lethality. Embryo development arrested at the globular stage.

RL35_THET8 / Q5SKU1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 78.8 bits

• subunit: Part of the 50S ribosomal subunit

7ood1 / P75447 Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol- treated cells (see paper)
Aligns to 1:59 / 59 (100.0%), covers 92.1% of TIGR00001, 76.9 bits

• Ligand: rna (7ood1)

RL35_RHOPA / Q6NDR5 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; RRP-L35 from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (see paper)
Aligns to 2:65 / 66 (97.0%), covers 98.4% of TIGR00001, 72.9 bits

5dm63 / Q9RSW6 Crystal structure of the 50s ribosomal subunit from deinococcus radiodurans (see paper)
Aligns to 1:63 / 65 (96.9%), covers 98.4% of TIGR00001, 72.1 bits

• Ligand: rna (5dm63)

RL35_DEIRA / Q9RSW6 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see 6 papers)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 72.1 bits

• function: Binds the 23S rRNA
  subunit: Part of the 50S ribosomal subunit. Contacts proteins L15 and L33.

5myjB7 / A2RMR2 of 70S ribosome from Lactococcus lactis (see paper)
Aligns to 1:63 / 64 (98.4%), covers 96.8% of TIGR00001, 71.9 bits

• Ligand: rna (5myjB7)

7nhk7 / A0A1B4XM73 7nhk7 (see paper)
Aligns to 1:63 / 64 (98.4%), covers 96.8% of TIGR00001, 64.2 bits

• Ligand: rna (7nhk7)

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