PaperBLAST – Find papers about a protein or its homologs

 

Family Search for TIGR00001

TIGR00001 hits 77 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

8buu3 / P55874 8buu3 (see paper)
Aligns to 1:63 / 65 (96.9%), covers 98.4% of TIGR00001, 94.4 bits

RL35_BACSU / P55874 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Bacillus subtilis (strain 168) (see paper)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 94.3 bits

8a3l2 / P0A7Q1 8a3l2 (see paper)
Aligns to 1:63 / 64 (98.4%), covers 100.0% of TIGR00001, 91.0 bits

RpmI / b1717 50S ribosomal subunit protein L35 from Escherichia coli K-12 substr. MG1655 (see 4 papers)
RL35_ECOLI / P0A7Q1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; Ribosomal protein A from Escherichia coli (strain K12) (see 9 papers)
rpmI / P0A7Q1 50S ribosomal subunit protein L35 from Escherichia coli (strain K12) (see 2 papers)
rpmI 50S ribosomal protein L35 from Escherichia coli K12 (see paper)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 90.9 bits

7f0d3 / A5U2Z9 Cryo-em structure of mycobacterium tuberculosis 50s ribosome subunit bound with clarithromycin (see paper)
Aligns to 1:62 / 62 (100.0%), covers 96.8% of TIGR00001, 89.1 bits

RK35_SPIOL / P23326 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic; CL35 from Spinacia oleracea (Spinach) (see 2 papers)
Aligns to 90:152 / 159 (39.6%), covers 100.0% of TIGR00001, 88.1 bits

5nrg3 / Q2FXQ0 The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with rb02 (see paper)
Aligns to 1:63 / 65 (96.9%), covers 100.0% of TIGR00001, 87.5 bits

7m4v2 / B7I693 A. Baumannii ribosome-eravacycline complex: 50s (see paper)
Aligns to 1:62 / 63 (98.4%), covers 98.4% of TIGR00001, 85.0 bits

8a578 / P0A491 Cryo-em structure of hflxr bound to the listeria monocytogenes 50s ribosomal subunit. (see paper)
Aligns to 1:63 / 63 (100.0%), covers 96.8% of TIGR00001, 83.8 bits

8crx2 / A0A371N4N9 8crx2 (see paper)
Aligns to 1:63 / 67 (94.0%), covers 96.8% of TIGR00001, 81.7 bits

6spb5 / A0A069QC44 Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in ul6 (see paper)
Aligns to 1:62 / 63 (98.4%), covers 96.8% of TIGR00001, 81.6 bits

RK35_ARATH / Q8VZ55 Large ribosomal subunit protein bL35c; 50S ribosomal protein L35, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 75:137 / 145 (43.4%), covers 100.0% of TIGR00001, 79.5 bits

RL35_THET8 / Q5SKU1 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
Aligns to 2:64 / 65 (96.9%), covers 100.0% of TIGR00001, 78.8 bits

7ood1 / P75447 Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol- treated cells (see paper)
Aligns to 1:59 / 59 (100.0%), covers 92.1% of TIGR00001, 76.9 bits

RL35_RHOPA / Q6NDR5 Large ribosomal subunit protein bL35; 50S ribosomal protein L35; RRP-L35 from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (see paper)
Aligns to 2:65 / 66 (97.0%), covers 98.4% of TIGR00001, 72.9 bits

5dm63 / Q9RSW6 Crystal structure of the 50s ribosomal subunit from deinococcus radiodurans (see paper)
Aligns to 1:63 / 65 (96.9%), covers 98.4% of TIGR00001, 72.1 bits

RL35_DEIRA / Q9RSW6 Large ribosomal subunit protein bL35; 50S ribosomal protein L35 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see 6 papers)
Aligns to 2:64 / 66 (95.5%), covers 98.4% of TIGR00001, 72.1 bits

5myjB7 / A2RMR2 of 70S ribosome from Lactococcus lactis (see paper)
Aligns to 1:63 / 64 (98.4%), covers 96.8% of TIGR00001, 71.9 bits

7nhk7 / A0A1B4XM73 7nhk7 (see paper)
Aligns to 1:63 / 64 (98.4%), covers 96.8% of TIGR00001, 64.2 bits

Or search for genetic data about TIGR00001 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory