PaperBLAST – Find papers about a protein or its homologs

 

PaperBLAST

PaperBLAST Hits for BRENDA::Q6GIL6 triose-phosphate isomerase (EC 5.3.1.1) (Staphylococcus aureus) (253 a.a., MRTPIIAGNW...)

Other sequence analysis tools:

Find functional residues: SitesBLAST

Search for conserved domains

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Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

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Found 250 similar proteins in the literature:

3uwvA / Q6GIL6 Crystal structure of staphylococcus aureus triosephosphate isomerase complexed with 2-phosphoglyceric acid (see paper)
100% identity, 99% coverage

TPIS_STAAR / Q6GIL6 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Staphylococcus aureus (strain MRSA252) (see 3 papers)
Q6GIL6 triose-phosphate isomerase (EC 5.3.1.1) from Staphylococcus aureus (see paper)
P68824 Triosephosphate isomerase from Staphylococcus aureus (strain MW2)
A7WZS8 Triosephosphate isomerase from Staphylococcus aureus (strain Mu3 / ATCC 700698)
P99133 Triosephosphate isomerase from Staphylococcus aureus (strain N315)
Q2FIL9 Triosephosphate isomerase from Staphylococcus aureus (strain USA300)
SA0729 triosephosphate isomerase from Staphylococcus aureus subsp. aureus N315
NP_371298 triosephosphate isomerase from Staphylococcus aureus subsp. aureus Mu50
SAUSA300_0758 triosephosphate isomerase from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_0743 triosephosphate isomerase from Staphylococcus aureus subsp. aureus str. Newman
SAR0830 triosephosphate isomerase from Staphylococcus aureus subsp. aureus MRSA252
SACOL0840 triosephosphate isomerase from Staphylococcus aureus subsp. aureus COL
CH51_RS04255, E5491_RS04085, RDJ18_RS04315, SAOV_0816 triose-phosphate isomerase from Staphylococcus aureus
100% identity, 100% coverage

SAOUHSC_00797 triosephosphate isomerase from Staphylococcus aureus subsp. aureus NCTC 8325
100% identity, 100% coverage

WP_029377651 triose-phosphate isomerase from Staphylococcus xylosus
89% identity, 100% coverage

SERP0444 triosephosphate isomerase from Staphylococcus epidermidis RP62A
Q5HQV2 Triosephosphate isomerase from Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
88% identity, 100% coverage

Sca_0426 triosephosphate isomerase from Staphylococcus carnosus subsp. carnosus TM300
82% identity, 100% coverage

UH47_11070 triose-phosphate isomerase from Staphylococcus pseudintermedius
80% identity, 100% coverage

BSU33920 triosephosphate isomerase from Bacillus subtilis subsp. subtilis str. 168
P27876 Triosephosphate isomerase from Bacillus subtilis (strain 168)
66% identity, 99% coverage

P35144 triose-phosphate isomerase (EC 5.3.1.1) from Priestia megaterium (see paper)
63% identity, 100% coverage

TPIS_BACCE / Q4MQ55 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus (see paper)
WR52_26170 triose-phosphate isomerase from Bacillus cereus
63% identity, 100% coverage

BAS4987 triosephosphate isomerase from Bacillus anthracis str. Sterne
63% identity, 100% coverage

IGB08_04525 triose-phosphate isomerase from Lactiplantibacillus plantarum
Q88YH4 Triosephosphate isomerase from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
lp_0791 triosephosphate isomerase from Lactobacillus plantarum WCFS1
64% identity, 98% coverage

lmo2457 highly similar to triose phosphate isomerase from Listeria monocytogenes EGD-e
63% identity, 100% coverage

E6J203 Triosephosphate isomerase from Streptococcus anginosus F0211
60% identity, 100% coverage

SSU0483 triosephosphate isomerase from Streptococcus suis P1/7
SSU05_0531 triosephosphate isomerase from Streptococcus suis 05ZYH33
60% identity, 98% coverage

tpiA / O32757 triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii subsp. bulgaricus (see paper)
58% identity, 98% coverage

BFP66_RS02590 triose-phosphate isomerase from Streptococcus suis
60% identity, 98% coverage

HSISS4_00409 triose-phosphate isomerase from Streptococcus salivarius
59% identity, 100% coverage

LBA0700 triosephosphate isomerase from Lactobacillus acidophilus NCFM
58% identity, 98% coverage

SSA_0859 Triosephosphate isomerase, putative from Streptococcus sanguinis SK36
58% identity, 99% coverage

EF1962 triosephosphate isomerase from Enterococcus faecalis V583
58% identity, 100% coverage

PWH42_01065 triose-phosphate isomerase from Pediococcus acidilactici
60% identity, 98% coverage

TPIS_GEOSE / P00943 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 3 papers)
P00943 triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus (see paper)
57% identity, 100% coverage

SMU_RS03370 triose-phosphate isomerase from Streptococcus mutans UA159
P72484 Triosephosphate isomerase from Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
57% identity, 100% coverage

SGO_0762 triosephosphate isomerase from Streptococcus gordonii str. Challis substr. CH1
A8AWA1 Triosephosphate isomerase from Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
58% identity, 100% coverage

1btmA / P00943 Triosephosphate isomerase (tim) complexed with 2-phosphoglycolic acid (see paper)
57% identity, 100% coverage

tpiA / P50918 triosephosphate isomerase subunit (EC 5.3.1.1) from Lactococcus lactis subsp. lactis (strain IL1403) (see paper)
60% identity, 98% coverage

T303_03545 triose-phosphate isomerase from Streptococcus thermophilus ASCC 1275
58% identity, 100% coverage

SK141_RS01855 triose-phosphate isomerase from Streptococcus oralis
58% identity, 100% coverage

SP_1574 triosephosphate isomerase from Streptococcus pneumoniae TIGR4
P66942 Triosephosphate isomerase from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
SPD_1404 triosephosphate isomerase from Streptococcus pneumoniae D39
58% identity, 100% coverage

LACR_1244 Triosephosphate isomerase from Lactococcus lactis subsp. cremoris SK11
59% identity, 98% coverage

tpi / AAC43268.1 triosephosphate isomerase from Lactococcus lactis subsp. lactis (see paper)
LLNZ_07340 triose-phosphate isomerase from Lactococcus cremoris subsp. cremoris NZ9000
llmg_1424 TpiA protein from Lactococcus lactis subsp. cremoris MG1363
59% identity, 98% coverage

LGG_00935 triosephosphate isomerase (TIM) (Triose-phosphate isomerase) (Lactacin B inducer protein) (IP) from Lactobacillus rhamnosus GG
LGG_00935 triose-phosphate isomerase from Lacticaseibacillus rhamnosus GG
57% identity, 98% coverage

T285_RS06185 triose-phosphate isomerase from Lactobacillus johnsonii N6.2
56% identity, 98% coverage

SPy0613 putative triosephosphate isomerase from Streptococcus pyogenes M1 GAS
58% identity, 98% coverage

CRIB_189 triose-phosphate isomerase from Romboutsia ilealis
56% identity, 98% coverage

CAETHG_1758 triose-phosphate isomerase from Clostridium autoethanogenum DSM 10061
53% identity, 98% coverage

TPIS_CLOPE / Q8XKU1 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens (strain 13 / Type A) (see paper)
54% identity, 98% coverage

CD3172 triosephosphate isomerase from Clostridium difficile 630
55% identity, 98% coverage

Ccel_2260 phosphoglycerate kinase from Clostridium cellulolyticum H10
Ccel_2260 triose-phosphate isomerase from Ruminiclostridium cellulolyticum H10
57% identity, 38% coverage

CA_C0711 triose-phosphate isomerase from Clostridium acetobutylicum ATCC 824
CAC0711 Triosephosphate isomerase from Clostridium acetobutylicum ATCC 824
54% identity, 98% coverage

F502_06077 triose-phosphate isomerase from Clostridium pasteurianum DSM 525 = ATCC 6013
53% identity, 98% coverage

TKV_c16320 triose-phosphate isomerase from Thermoanaerobacter kivui
52% identity, 98% coverage

Clocel_0721 triose-phosphate isomerase from Clostridium cellulovorans 743B
55% identity, 98% coverage

pgk / P36204 Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 4 papers)
PGKT_THEMA / P36204 Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 3 papers)
P36204 triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima (see 2 papers)
TM0689 phosphoglycerate kinase/triose-phosphate isomerase from Thermotoga maritima MSB8
51% identity, 38% coverage

Cthe_0139 triosephosphate isomerase from Clostridium thermocellum ATCC 27405
Clo1313_2093 triose-phosphate isomerase from Acetivibrio thermocellus ATCC 27405
53% identity, 96% coverage

Q03SL6 Triosephosphate isomerase from Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947)
47% identity, 98% coverage

CA51_20800 triose-phosphate isomerase from Rosistilla oblonga
49% identity, 100% coverage

Poly24_21710 triose-phosphate isomerase from Rosistilla carotiformis
49% identity, 100% coverage

Mal33_21820 triose-phosphate isomerase from Rosistilla oblonga
49% identity, 100% coverage

A4XKV2 Multifunctional fusion protein from Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)
Csac_1952 Phosphoglycerate kinase., Triose-phosphate isomerase from Caldicellulosiruptor saccharolyticus DSM 8903
50% identity, 38% coverage

TepiRe1_2127 triose-phosphate isomerase from Tepidanaerobacter acetatoxydans Re1
48% identity, 98% coverage

GSU1628 phosphoglycerate kinase/triosephosphate isomerase from Geobacter sulfurreducens PCA
49% identity, 38% coverage

PFCIRM129_11290 triose-phosphate isomerase from Propionibacterium freudenreichii subsp. freudenreichii
49% identity, 95% coverage

SYNPCC7002_A0595 triosephosphate isomerase from Synechococcus sp. PCC 7002
46% identity, 98% coverage

Amuc_0562 Triose-phosphate isomerase from Akkermansia muciniphila ATCC BAA-835
AMUC_RS03080 triose-phosphate isomerase from Akkermansia muciniphila ATCC BAA-835
47% identity, 99% coverage

TPIS_STRCO / Q9Z520 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (see paper)
SCO1945 triosephosphate isomerase from Streptomyces coelicolor A3(2)
48% identity, 97% coverage

A5VHW7 Triosephosphate isomerase from Limosilactobacillus reuteri (strain DSM 20016)
46% identity, 99% coverage

C789_4415 triose-phosphate isomerase from Microcystis aeruginosa FACHB-905 = DIANCHI905
48% identity, 98% coverage

DEFDS_0129 triose-phosphate isomerase from Deferribacter desulfuricans SSM1
45% identity, 99% coverage

CA54_32530 triose-phosphate isomerase from Symmachiella macrocystis
45% identity, 98% coverage

alr4385 triosephosphate isomerase from Nostoc sp. PCC 7120
45% identity, 98% coverage

Pan258_47170 triose-phosphate isomerase from Symmachiella dynata
45% identity, 98% coverage

UWK_00786 triose-phosphate isomerase from Desulfocapsa sulfexigens DSM 10523
43% identity, 98% coverage

Mal52_48110 triose-phosphate isomerase from Symmachiella dynata
45% identity, 98% coverage

BB341_RS22335 triose-phosphate isomerase from Streptomyces clavuligerus
45% identity, 97% coverage

Ava_3290 Triosephosphate isomerase from Anabaena variabilis ATCC 29413
45% identity, 98% coverage

6neeB Crystal structure of a reconstructed ancestor of triosephosphate isomerase from eukaryotes (see paper)
48% identity, 98% coverage

R1CNI7 Triosephosphate isomerase from Emiliania huxleyi
44% identity, 100% coverage

6bveA / Q59994 Triosephosphate isomerase of synechocystis in complex with 2- phosphoglycolic acid (see paper)
slr0783 triosephosphate isomerase from Synechocystis sp. PCC 6803
45% identity, 98% coverage

DET0742 triosephosphate isomerase from Dehalococcoides ethenogenes 195
45% identity, 100% coverage

Pro0901 Triosephosphate isomerase from Prochlorococcus marinus str. SS120
45% identity, 98% coverage

8w06B Crystal structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with pgh (see paper)
47% identity, 98% coverage

YP_003432274 triosephosphate isomerase from Hydrogenobacter thermophilus TK-6
47% identity, 97% coverage

Q7NAQ4 triose-phosphate isomerase (EC 5.3.1.1) from Mycoplasma gallisepticum (see paper)
45% identity, 97% coverage

Alvin_2432 triosephosphate isomerase from Allochromatium vinosum DSM 180
44% identity, 99% coverage

lpp2838 triosephosphate isomerase from Legionella pneumophila str. Paris
43% identity, 99% coverage

lpg2792 triosephosphate isomerase (TIM) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
42% identity, 99% coverage

4y96A / A0A0M3KL18 Crystal structure of triosephosphate isomerase from gemmata obscuriglobus (see paper)
44% identity, 99% coverage

BB0055 triosephosphate isomerase from Borrelia burgdorferi B31
46% identity, 98% coverage

Mal48_48530 triose-phosphate isomerase from Thalassoglobus polymorphus
44% identity, 98% coverage

Mal4_33520 triose-phosphate isomerase from Maioricimonas rarisocia
43% identity, 98% coverage

MAP1166 Tpi from Mycobacterium avium subsp. paratuberculosis str. k10
46% identity, 95% coverage

TPIS_MYCTU / P9WG43 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
P9WG43 triose-phosphate isomerase (EC 5.3.1.1) from Mycobacterium tuberculosis (see 2 papers)
NP_215954 triosephosphate isomerase from Mycobacterium tuberculosis H37Rv
Rv1438 triosephosphate isomerase from Mycobacterium tuberculosis H37Rv
45% identity, 95% coverage

3taoA / P9WG43 Structure of mycobacterium tuberculosis triosephosphate isomerase bound to phosphoglycolohydroxamate (see paper)
45% identity, 96% coverage

A6WC54 Triosephosphate isomerase from Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)
44% identity, 95% coverage

CT328 Triosephosphate Isomerase from Chlamydia trachomatis D/UW-3/CX
43% identity, 90% coverage

LT988_02660 triose-phosphate isomerase from Thiocapsa bogorovii
42% identity, 98% coverage

SO1200 triosephosphate isomerase from Shewanella oneidensis MR-1
40% identity, 95% coverage

A6WRH2 Triosephosphate isomerase from Shewanella baltica (strain OS185)
40% identity, 95% coverage

BJD94_12630 triose-phosphate isomerase from Vibrio vulnificus Env1
43% identity, 94% coverage

A2FT29 triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis (see 2 papers)
43% identity, 95% coverage

MSMEG_3086 triosephosphate isomerase from Mycobacterium smegmatis str. MC2 155
45% identity, 95% coverage

TPIS_MORMI / P50921 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina (Vibrio marinus) (see paper)
P50921 triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina (see 2 papers)
tpiA / PDB|1AW1_A triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina (see paper)
44% identity, 94% coverage

NCgl1524 triose-phosphate isomerase from Corynebacterium glutamicum ATCC 13032
cg1789 triosephosphate isomerase from Corynebacterium glutamicum ATCC 13032
46% identity, 92% coverage

VAS14_21527 triose-phosphate isomerase from Photobacterium angustum S14
VAS14_21527 triosephosphate isomerase from Vibrio angustum S14
41% identity, 96% coverage

A2EGX9 triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis (see 3 papers)
XP_001320336 Chain A Triosephosphate isomerase from Trichomonas vaginalis G3
43% identity, 95% coverage

Q8MPF2 triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor (see 2 papers)
44% identity, 98% coverage

Tpi / b3919 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
tpiA / P0A858 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli (strain K12) (see 32 papers)
TPIS_ECODH / B1XB85 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli (strain K12 / DH10B) (see paper)
TPIS_ECOLI / P0A858 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli (strain K12) (see 8 papers)
P0A858 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli (see paper)
4mvaA 1.43 angstrom resolution crystal structure of triosephosphate isomerase (tpia) from escherichia coli in complex with acetyl phosphate. (see paper)
tpiA / RF|NP_418354 triose-phosphate isomerase from Escherichia coli K12 (see 4 papers)
NP_418354 triose-phosphate isomerase from Escherichia coli str. K-12 substr. MG1655
P0A860 Triosephosphate isomerase from Escherichia coli O157:H7
UTI89_C4503 triosephosphate isomerase from Escherichia coli UTI89
b3919 triosephosphate isomerase from Escherichia coli str. K-12 substr. MG1655
c4871 Triosephosphate isomerase from Escherichia coli CFT073
SF5M90T_3496 triose-phosphate isomerase from Shigella flexneri 5a str. M90T
43% identity, 99% coverage

1aw1A / P50921 Triosephosphate isomerase of vibrio marinus complexed with 2- phosphoglycolate (see paper)
44% identity, 94% coverage

Q7JNS1 Triosephosphate isomerase from Drosophila simulans
45% identity, 98% coverage

A5VI33 Triosephosphate isomerase from Limosilactobacillus reuteri (strain DSM 20016)
42% identity, 96% coverage

K2SJ45 Triosephosphate isomerase from Macrophomina phaseolina (strain MS6)
46% identity, 95% coverage

BH0055 triosephosphate isomerase from Borrelia hermsii DAH
42% identity, 98% coverage

L7UZA7 Triosephosphate isomerase from Dermatophagoides farinae
43% identity, 98% coverage

KPHS_51710 triosephosphate isomerase from Klebsiella pneumoniae subsp. pneumoniae HS11286
43% identity, 96% coverage

TPIS_DROME / P29613 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster (Fruit fly) (see paper)
45% identity, 98% coverage

SNSL254_A4410 triosephosphate isomerase from Salmonella enterica subsp. enterica serovar Newport str. SL254
NP_462962 triosephosphate isomerase from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q8ZKP7 Triosephosphate isomerase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
STM14_4906 triose-phosphate isomerase from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
41% identity, 99% coverage

tpi1 / CAD98875.1 triose phosphate isomerase from Klebsiella pneumoniae (see paper)
43% identity, 96% coverage

NP_788764 triose phosphate isomerase, isoform A from Drosophila melanogaster
45% identity, 71% coverage

PMI3205 triosephosphate isomerase from Proteus mirabilis HI4320
43% identity, 96% coverage

H16_A1047 triose-phosphate isomerase from Cupriavidus necator H16
H16_A1047 triosephosphate isomerase from Ralstonia eutropha H16
42% identity, 98% coverage

A0A0S1U346 Triosephosphate isomerase from Amphioctopus fangsiao
44% identity, 98% coverage

PHATRDRAFT_50738 triosephosphate isomerase from Phaeodactylum tricornutum CCAP 1055/1
B7FT67 Triosephosphate isomerase from Phaeodactylum tricornutum (strain CCAP 1055/1)
41% identity, 86% coverage

TPIS_THET8 / Q5SJR1 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
40% identity, 98% coverage

CPn1063 Triosephosphate Isomerase from Chlamydophila pneumoniae CWL029
41% identity, 97% coverage

A4ZXC4 Triosephosphate isomerase from Apis mellifera
45% identity, 98% coverage

LIC12094 triosephosphate isomerase from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
42% identity, 98% coverage

Q17HW3 Triosephosphate isomerase from Aedes aegypti
45% identity, 98% coverage

Q38IW8 Triosephosphate isomerase from Glycine max
42% identity, 99% coverage

PFLU_RS25840 triose-phosphate isomerase from Pseudomonas [fluorescens] SBW25
41% identity, 97% coverage

C5CBP6 Triosephosphate isomerase from Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
44% identity, 95% coverage

GRMZM2G018177 uncharacterized protein LOC100194114 from Zea mays
44% identity, 99% coverage

LIMLP_10350 triose-phosphate isomerase from Leptospira interrogans serovar Manilae
42% identity, 98% coverage

Entcl_0092 triose-phosphate isomerase from [Enterobacter] lignolyticus SCF1
43% identity, 99% coverage

O88328 Triosephosphate isomerase from Rattus norvegicus
44% identity, 98% coverage

XP_447161 hypothetical protein from Candida glabrata CBS 138
42% identity, 98% coverage

V6E02_12015 triose-phosphate isomerase from Thiobacter sp. AK1
41% identity, 100% coverage

B4FNW1 Triosephosphate isomerase, cytosolic from Zea mays
NP_001140424 triosephosphate isomerase, cytosolic from Zea mays
P12863 Triosephosphate isomerase, cytosolic from Zea mays
43% identity, 99% coverage

TPIS_PROCL / F5A6E9 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Pro c 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Procambarus clarkii (Red swamp crayfish) (see paper)
44% identity, 98% coverage

AFUA_5G13450, Afu5g13450 triosephosphate isomerase from Aspergillus fumigatus Af293
Q4WVV5 Triosephosphate isomerase from Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
44% identity, 95% coverage

TP0537 triosephosphate isomerase (tpi) from Treponema pallidum subsp. pallidum str. Nichols
41% identity, 98% coverage

HI0678 triosephosphate isomerase (tpiA) from Haemophilus influenzae Rd KW20
42% identity, 91% coverage

Q9HGY8 Triosephosphate isomerase from Aspergillus oryzae (strain ATCC 42149 / RIB 40)
43% identity, 95% coverage

TPIS_YEAST / P00942 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
P00942 triose-phosphate isomerase (EC 5.3.1.1) from Saccharomyces cerevisiae (see 8 papers)
YDR050C Tpi1p from Saccharomyces cerevisiae
NP_010335 triose-phosphate isomerase TPI1 from Saccharomyces cerevisiae S288C
42% identity, 98% coverage

PP_4715 triose-phosphate isomerase from Pseudomonas putida KT2440
PP4715 triosephosphate isomerase from Pseudomonas putida KT2440
41% identity, 97% coverage

PA4748 triosephosphate isomerase from Pseudomonas aeruginosa PAO1
PA14_62830 triosephosphate isomerase from Pseudomonas aeruginosa UCBPP-PA14
40% identity, 97% coverage

Q45XG1 Triosephosphate isomerase from Schistosoma turkestanicum
43% identity, 96% coverage

SPC_4187 triosephosphate isomerase from Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
41% identity, 97% coverage

B7FSI3 Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase from Phaeodactylum tricornutum (strain CCAP 1055/1)
PHATRDRAFT_25308 triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase precursor from Phaeodactylum tricornutum CCAP 1055/1
44% identity, 39% coverage

B5XB51 Triosephosphate isomerase from Salmo salar
44% identity, 98% coverage

TPIS_ENTH1 / O02611 Triosephosphate isomerase; EhTIM; Triose-phosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM) (see 2 papers)
O02611 triose-phosphate isomerase (EC 5.3.1.1) from Entamoeba histolytica (see 2 papers)
EHI_056480, XP_650725 triosephosphate isomerase from Entamoeba histolytica HM-1:IMSS
A0A5K1V873 Triosephosphate isomerase from Entamoeba histolytica
39% identity, 95% coverage

B7Q3K7 Triosephosphate isomerase from Ixodes scapularis
42% identity, 98% coverage

A5AZX9 Triosephosphate isomerase, cytosolic from Vitis vinifera
42% identity, 99% coverage

APA386B_2746 triose-phosphate isomerase from Acetobacter pasteurianus 386B
40% identity, 100% coverage

A5A6F9 Triosephosphate isomerase from Schistosoma haematobium
42% identity, 96% coverage

B7G3C1 Triosephosphate isomerase from Phaeodactylum tricornutum (strain CCAP 1055/1)
41% identity, 94% coverage

M1CNK1 Triosephosphate isomerase, cytosolic from Solanum tuberosum
43% identity, 99% coverage

FTT_0080 triosephosphate isomerase from Francisella tularensis subsp. tularensis SCHU S4
38% identity, 98% coverage

TIM / PDB|1M6J_A triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica (see paper)
39% identity, 94% coverage

y0052 triosephosphate isomerase from Yersinia pestis KIM
YPO0085 triosephosphate isomerase from Yersinia pestis CO92
42% identity, 96% coverage

sS8_1782 triose-phosphate isomerase from Methylocaldum marinum
39% identity, 98% coverage

Q6T379 Triosephosphate isomerase, cytosolic from Solanum chacoense
43% identity, 99% coverage

TPIS_SCYPA / A0A1L5YRA2 Triosephosphate isomerase; TIM; Allergen Scy p 8; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Scy p 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Scylla paramamosain (Mud crab) (see 2 papers)
43% identity, 98% coverage

TGME49_233500 triose-phosphate isomerase TPI-II from Toxoplasma gondii ME49
41% identity, 67% coverage

LOC107804179 triosephosphate isomerase, cytosolic-like from Nicotiana tabacum
44% identity, 100% coverage

TPI / GI|2143243 triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica (see paper)
39% identity, 94% coverage

B0LT90 Triosephosphate isomerase, cytosolic from Oryza coarctata
43% identity, 99% coverage

FTL_1780 triosephosphate isomerase from Francisella tularensis subsp. holarctica
38% identity, 98% coverage

Q589R5 Triosephosphate isomerase from Oryzias latipes
41% identity, 98% coverage

A8B3A8 triose-phosphate isomerase (EC 5.3.1.1) from Rhipicephalus microplus (see paper)
41% identity, 98% coverage

4ff7A / P00942 Structure of c126s mutant of saccharomyces cerevisiae triosephosphate isomerase (see paper)
42% identity, 98% coverage

K4FXE7 Triosephosphate isomerase, cytosolic from Capsicum annuum
43% identity, 99% coverage

K0E682 Triosephosphate isomerase from Penaeus vannamei
42% identity, 98% coverage

5eywA / K0E682 Crystal structure of litopenaeus vannamei triosephosphate isomerase complexed with 2-phosphoglycolic acid (see paper)
42% identity, 98% coverage

Q27775 Triosephosphate isomerase from Schistosoma japonicum
41% identity, 96% coverage

W7MA30 Triosephosphate isomerase from Gibberella moniliformis (strain M3125 / FGSC 7600)
43% identity, 100% coverage

B5YLS7 Triosephosphate isomerase from Thalassiosira pseudonana
41% identity, 91% coverage

TPIS_CAEEL / Q10657 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans (see paper)
Q10657 triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans (see paper)
42% identity, 98% coverage

LOC103863161 triosephosphate isomerase, cytosolic from Brassica rapa
42% identity, 99% coverage

Q1MTI4 Triosephosphate isomerase A from Danio rerio
43% identity, 98% coverage

P48501 Triosephosphate isomerase from Schistosoma mansoni
41% identity, 96% coverage

Smp_003990, XP_018647623 putative triosephosphate isomerase from Schistosoma mansoni
G4V6B9 Triosephosphate isomerase from Schistosoma mansoni
41% identity, 96% coverage

Sb02g031030 No description from Sorghum bicolor
43% identity, 81% coverage

6ooiC / P48501 Crystal structure of triosephosphate isomerase from schistosoma mansoni in complex with 2pg (see paper)
41% identity, 95% coverage

FFUJ_03280 probable TPI1-triose-phosphate isomerase from Fusarium fujikuroi IMI 58289
43% identity, 100% coverage

P46226 Triosephosphate isomerase, cytosolic from Secale cereale
43% identity, 99% coverage

C5XQ07 Triosephosphate isomerase, cytosolic from Sorghum bicolor
43% identity, 82% coverage

FTN_1631 triosephosphate isomerase from Francisella tularensis subsp. novicida U112
38% identity, 98% coverage

XF0303 triosephosphate isomerase from Xylella fastidiosa 9a5c
38% identity, 98% coverage

XP_001274623 triosephosphate isomerase from Aspergillus clavatus NRRL 1
42% identity, 95% coverage

Q9FS79 Triosephosphate isomerase, cytosolic from Triticum aestivum
43% identity, 99% coverage

An14g04920 triose-phosphate-isomerase tpiA from patent WO8704464-A-Aspergillus niger from Aspergillus niger
40% identity, 95% coverage

FPRO_05057 putative TPI1-triose-phosphate isomerase from Fusarium proliferatum ET1
43% identity, 100% coverage

B4F820 Triosephosphate isomerase, chloroplastic from Zea mays
42% identity, 81% coverage

5zfxB / A0A074Z863 Crystal structure of triosephosphate isomerase from opisthorchis viverrini (see paper)
40% identity, 98% coverage

GRMZM5G852968 uncharacterized protein LOC100191222 from Zea mays
42% identity, 81% coverage

B6UG30 Triosephosphate isomerase from Zea mays
42% identity, 81% coverage

APL_1925 Triosephosphate isomerase from Actinobacillus pleuropneumoniae L20
42% identity, 98% coverage

U876_04895 triose-phosphate isomerase from Aeromonas hydrophila NJ-35
38% identity, 99% coverage

D2D303 Triosephosphate isomerase, cytosolic from Gossypium hirsutum
41% identity, 99% coverage

BAB1_1161 Triosephosphate isomerase from Brucella melitensis biovar Abortus 2308
40% identity, 97% coverage

CNAG_02035 triose-phosphate isomerase from Cryptococcus neoformans var. grubii H99
40% identity, 100% coverage

B9GJN0 Uncharacterized protein from Populus trichocarpa
42% identity, 98% coverage

TPIS_PARBA / Q96VN5 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01) (Paracoccidioides brasiliensis) (see paper)
43% identity, 95% coverage

LOC110739768 triosephosphate isomerase, chloroplastic from Chenopodium quinoa
42% identity, 76% coverage

TPIS_CHICK / P00940 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Gallus gallus (Chicken) (see paper)
P00940 triose-phosphate isomerase (EC 5.3.1.1) from Gallus gallus (see 3 papers)
NP_990782 triosephosphate isomerase from Gallus gallus
43% identity, 98% coverage

A0A074Z863 Triosephosphate isomerase from Opisthorchis viverrini
40% identity, 98% coverage

PAAG_02585, XP_002795879 triosephosphate isomerase from Paracoccidioides lutzii Pb01
43% identity, 93% coverage

Ot09g00080 Triosephosphate isomerase from Ostreococcus tauri
41% identity, 84% coverage

4bi7A / P36186 Crystal structure of a mutant (c202a) of triosephosphate isomerase from giardia lamblia complexed with 2-phosphoglycolic acid (see paper)
43% identity, 97% coverage

E5SS61 Triosephosphate isomerase from Trichinella spiralis
42% identity, 90% coverage

PITG_13116 triosephosphate isomerase from Phytophthora infestans T30-4
40% identity, 99% coverage

NCU07550 triosephosphate isomerase from Neurospora crassa OR74A
43% identity, 98% coverage

LOC108986375 triosephosphate isomerase, cytosolic from Juglans regia
41% identity, 99% coverage

PADG_06906, XP_010762134 triosephosphate isomerase from Paracoccidioides brasiliensis Pb18
42% identity, 86% coverage

P36186 triose-phosphate isomerase (EC 5.3.1.1) from Giardia intestinalis (see 3 papers)
GL50803_0093938, GL50803_93938, XP_001706830 Triosephosphate isomerase, cytosolic from Giardia intestinalis
43% identity, 97% coverage

CTIMC / P48491 cytosolic triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana (see paper)
TPIS_ARATH / P48491 Triosephosphate isomerase, cytosolic; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
P48491 triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana (see 2 papers)
AT3G55440, NP_191104 triosephosphate isomerase from Arabidopsis thaliana
NP_191104 TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase from Arabidopsis thaliana
41% identity, 99% coverage

P46225 Triosephosphate isomerase, chloroplastic from Secale cereale
42% identity, 82% coverage

Q5CSE7 triose-phosphate isomerase (EC 5.3.1.1) from Cryptosporidium parvum (see paper)
XP_628120, cgd1_3040 triosephosphate isomerase from Cryptosporidium parvum Iowa II
38% identity, 100% coverage

Q90XG0 Triosephosphate isomerase B from Danio rerio
42% identity, 98% coverage

W9R6S4 Triosephosphate isomerase from Morus notabilis
LOC21407669 triosephosphate isomerase, chloroplastic from Morus notabilis
42% identity, 76% coverage

B7FSQ0 Triosephosphate isomerase from Phaeodactylum tricornutum (strain CCAP 1055/1)
41% identity, 83% coverage

TPIS_BARHE / Q8L1Z5 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) (Rochalimaea henselae)
Q8L1Z5 triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae (see paper)
38% identity, 97% coverage

S6FMC3 Triosephosphate isomerase from Litomosoides sigmodontis
43% identity, 98% coverage

CE557_402 triose-phosphate isomerase from Cardinium endosymbiont of Sogatella furcifera
37% identity, 98% coverage

W9S728 Triosephosphate isomerase, cytosolic from Morus notabilis
41% identity, 99% coverage

M7Z1M4 Triosephosphate isomerase, chloroplastic from Triticum urartu
42% identity, 88% coverage

P48496 Triosephosphate isomerase, chloroplastic from Spinacia oleracea
42% identity, 76% coverage

MPN629 triosephosphate isomerase from Mycoplasma pneumoniae M129
42% identity, 97% coverage

Q6SA19 Triosephosphate isomerase from Rattus norvegicus
44% identity, 98% coverage

1ssgA / P00940 Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase (see paper)
43% identity, 98% coverage

TPIS_CANAL / Q9P940 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast) (see paper)
TPI1 triosephosphate isomerase (TIM); EC 5.3.1.1 from Candida albicans (see 7 papers)
42% identity, 98% coverage

NP_001080476 triosephosphate isomerase from Xenopus laevis
42% identity, 98% coverage

LOC107795534 triosephosphate isomerase, cytosolic-like from Nicotiana tabacum
41% identity, 99% coverage

LOC104605564 triosephosphate isomerase, chloroplastic-like from Nelumbo nucifera
42% identity, 78% coverage

P48494 Triosephosphate isomerase, cytosolic from Oryza sativa subsp. japonica
41% identity, 99% coverage

RL2513 putative triosephosphate isomerase from Rhizobium leguminosarum bv. viciae 3841
43% identity, 96% coverage

F2EHF8 Triosephosphate isomerase, cytosolic from Hordeum vulgare subsp. vulgare
43% identity, 99% coverage

CIMG_09361 triosephosphate isomerase from Coccidioides immitis RS
42% identity, 95% coverage

E3JPZ9 Triosephosphate isomerase from Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL)
PGTG_00038 triosephosphate isomerase from Puccinia graminis f. sp. tritici CRL 75-36-700-3
40% identity, 99% coverage

Q5S7Y5 triose-phosphate isomerase (EC 5.3.1.1) from Chlamydomonas reinhardtii (see paper)
CHLREDRAFT_26265, XP_001690035 uncharacterized protein from Chlamydomonas reinhardtii
41% identity, 88% coverage

BTH_I1058 triosephosphate isomerase from Burkholderia thailandensis E264
39% identity, 100% coverage

HPODL_03187 Triosephosphate isomerase from Ogataea parapolymorpha DL-1
40% identity, 98% coverage

Q0H294 triose-phosphate isomerase (EC 5.3.1.1) from Pteris vittata (see paper)
42% identity, 99% coverage

I3SN66 Triose-phosphate isomerase from Medicago truncatula
40% identity, 79% coverage

D0G7F6 Triosephosphate isomerase from Sus scrofa
43% identity, 98% coverage

P48500 Triosephosphate isomerase from Rattus norvegicus
NP_075211 triosephosphate isomerase from Rattus norvegicus
44% identity, 98% coverage

TASI_0409 triose-phosphate isomerase from Taylorella asinigenitalis MCE3
39% identity, 96% coverage

I3S3S0 Cytosolic triosephosphate isomerase from Medicago truncatula
40% identity, 99% coverage

F6I134 Triosephosphate isomerase, chloroplastic from Vitis vinifera
42% identity, 76% coverage

Bm1_29130, XP_001897269 triosephosphate isomerase, putative from Brugia malayi
41% identity, 98% coverage

TPIS_PLAFA / Q07412 Triosephosphate isomerase; PfTIM; Triose-phosphate isomerase; EC 5.3.1.1 from Plasmodium falciparum (see 7 papers)
Q07412 triose-phosphate isomerase (EC 5.3.1.1) from Plasmodium falciparum (see 13 papers)
tpi / AAA18799.1 triosephosphate isomerase from Plasmodium falciparum (see paper)
PF3D7_1439900, XP_001348552 triosephosphate isomerase from Plasmodium falciparum 3D7
38% identity, 99% coverage

SS1G_11433 triosephosphate isomerase from Sclerotinia sclerotiorum 1980 UF-70
45% identity, 95% coverage

PITG_16048 triosephosphate isomerase from Phytophthora infestans T30-4
43% identity, 89% coverage

Q9M4S8 Triosephosphate isomerase, chloroplastic from Fragaria ananassa
40% identity, 78% coverage

PAS_chr3_0951 Triose phosphate isomerase, abundant glycolytic enzyme from Komagataella phaffii GS115
41% identity, 98% coverage

XP_002785920 triose-phosphate isomerase 1, putative from Perkinsus marinus ATCC 50983
41% identity, 98% coverage

NMA0570 putative triosephosphate isomerase from Neisseria meningitidis Z2491
39% identity, 98% coverage

TGME49_025930 triose-phosphate isomerase TPI-I from Toxoplasma gondii ME49
39% identity, 98% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory