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PaperBLAST

PaperBLAST Hits for sp|Q2IH94|GATA_ANADE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=gatA PE=3 SV=1 (492 a.a., MSTPAKELCR...)

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Found 251 similar proteins in the literature:

Q88XP7 Glutamyl-tRNA(Gln) amidotransferase subunit A from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
53% identity, 95% coverage

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
BSU06680 aspartyl/glutamyl-tRNA amidotransferase subunit A from Bacillus subtilis subsp. subtilis str. 168
57% identity, 96% coverage

GSU3381 glutamyl-tRNA(Gln) amidotransferase, A subunit from Geobacter sulfurreducens PCA
60% identity, 97% coverage

Gmet_0075 Glutamyl-tRNA(Gln) amidotransferase A subunit from Geobacter metallireducens GS-15
59% identity, 97% coverage

BAB2_0646 Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit from Brucella melitensis biovar Abortus 2308
55% identity, 97% coverage

cce_1710 glutamyl-tRNA (Gln) amidotransferase subunit A from Cyanothece sp. ATCC 51142
55% identity, 95% coverage

FUT48_26015 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Pseudomonas sp. JG-B
56% identity, 96% coverage

LSEI_1058 Asp-tRNA-Asn/Glu-tRNA-Gln amidotransferase A subunit from Lactobacillus casei ATCC 334
55% identity, 95% coverage

SSA_0570 Glutamyl-tRNA(Gln) amidotransferase subunit A, putative from Streptococcus sanguinis SK36
52% identity, 94% coverage

NE2072 Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit from Nitrosomonas europaea ATCC 19718
53% identity, 93% coverage

PA4483 glutamyl-tRNA amidotransferase subunit A from Pseudomonas aeruginosa PAO1
55% identity, 96% coverage

lmo1755 glutamyl-tRNA(Gln) amidotransferase (subunit A) from Listeria monocytogenes EGD-e
53% identity, 97% coverage

Q81IN3 Glutamyl-tRNA(Gln) amidotransferase subunit A from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
55% identity, 93% coverage

CBO3266 glutamyl-tRNA amidotransferase subunit A from Clostridium botulinum A str. ATCC 3502
49% identity, 97% coverage

FORC47_RS01880 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Bacillus cereus
54% identity, 95% coverage

NP_385418 PUTATIVE GLUTAMYL-TRNA AMIDOTRANSFERASE SUBUNIT A PROTEIN from Sinorhizobium meliloti 1021
54% identity, 98% coverage

Bd0059 glutamyl-tRNA(Gln) amidotransferase, A subunit from Bdellovibrio bacteriovorus HD100
53% identity, 96% coverage

RPA3107 Glu-tRNA(Gln) amidotransferase subunit A from Rhodopseudomonas palustris CGA009
55% identity, 97% coverage

DVU0808 glutamyl-tRNA(Gln) amidotransferase, A subunit from Desulfovibrio vulgaris Hildenborough
59% identity, 96% coverage

LGG_01019 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Lacticaseibacillus rhamnosus GG
LGG_01019 aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit A (Adt) from Lactobacillus rhamnosus GG
55% identity, 93% coverage

CBU_1474 glutamyl-tRNA amidotransferase subunit A from Coxiella burnetii RSA 493
53% identity, 93% coverage

RHE_RS09475 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Rhizobium etli CFN 42
53% identity, 97% coverage

BCAL0484 glutamyl-tRNA amidotransferase subunit A from Burkholderia cenocepacia J2315
56% identity, 95% coverage

Q1BSL2 Glutamyl-tRNA(Gln) amidotransferase subunit A from Burkholderia orbicola (strain AU 1054)
56% identity, 95% coverage

FN0754 Glutamyl-tRNA(Gln) amidotransferase subunit A from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
49% identity, 98% coverage

SERP1438 glutamyl-tRNA(Gln) amidotransferase, A subunit from Staphylococcus epidermidis RP62A
52% identity, 94% coverage

P63488 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Staphylococcus aureus (see paper)
2dqnA / P63488 Structure of tRNA-dependent amidotransferase gatcab complexed with asn (see paper)
SAV1900 glutamyl-tRNAGln amidotransferase subunit A from Staphylococcus aureus subsp. aureus Mu50
SA1716 glutamyl-tRNAGln amidotransferase subunit A from Staphylococcus aureus subsp. aureus N315
52% identity, 94% coverage

DLJ56_RS04105 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Staphylococcus aureus
52% identity, 94% coverage

A6QIC8 Glutamyl-tRNA(Gln) amidotransferase subunit A from Staphylococcus aureus (strain Newman)
SAUSA300_1881 Aspartyl/glutamyl-tRNA amidotransferase subunit A from Staphylococcus aureus subsp. aureus USA300_FPR3757
52% identity, 94% coverage

SAR1992 glutamyl-tRNA amidotransferase subunit A from Staphylococcus aureus subsp. aureus MRSA252
52% identity, 94% coverage

LSA1547 Glutamyl-tRNA amidotransferase, subunit A from Lactobacillus sakei subsp. sakei 23K
51% identity, 95% coverage

gbs1712 Unknown from Streptococcus agalactiae NEM316
51% identity, 94% coverage

SMU_RS08345 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Streptococcus mutans UA159
50% identity, 93% coverage

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
51% identity, 97% coverage

Cbei_2128 aspartyl/glutamyl-tRNA amidotransferase subunit A from Clostridium beijerincki NCIMB 8052
49% identity, 96% coverage

NMY233_1266 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Neisseria meningitidis NM233
49% identity, 96% coverage

NMA1568 Glu-tRNA(Gln) amidotransferase subunit A from Neisseria meningitidis Z2491
49% identity, 96% coverage

ZMO0783 aspartyl/glutamyl-tRNA amidotransferase subunit A from Zymomonas mobilis subsp. mobilis ZM4
50% identity, 98% coverage

BL0403 glutamyl-tRNA amidotransferase subunit A from Bifidobacterium longum NCC2705
53% identity, 90% coverage

SP_0437 aspartyl/glutamyl-tRNA amidotransferase subunit A from Streptococcus pneumoniae TIGR4
50% identity, 95% coverage

PP0931 glutamyl-tRNA(Gln) amidotransferase, A subunit from Pseudomonas putida KT2440
53% identity, 96% coverage

PSYRMG_11680 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Pseudomonas syringae UMAF0158
52% identity, 96% coverage

ACIAD0823 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A from Acinetobacter sp. ADP1
51% identity, 97% coverage

Rv3011c glutamyl-tRNA amidotransferase subunit A from Mycobacterium tuberculosis H37Rv
55% identity, 95% coverage

MSMEG_2365 glutamyl-tRNA(Gln) amidotransferase subunit A from Mycobacterium smegmatis str. MC2 155
WP_003893733 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Mycolicibacterium smegmatis MC2 51
53% identity, 99% coverage

gatA / Q9RTA9 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
55% identity, 90% coverage

Q9X0Z9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Thermotoga maritima (see paper)
TM1272 glutamyl tRNA-Gln amidotransferase, subunit A from Thermotoga maritima MSB8
50% identity, 94% coverage

WD0505 glutamyl-tRNA(Gln) amidotransferase, A subunit from Wolbachia endosymbiont of Drosophila melanogaster
46% identity, 98% coverage

GATA_ARATH / Q9LI77 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G25660 glutamyl-tRNA(Gln) amidotransferase, putative from Arabidopsis thaliana
50% identity, 87% coverage

LIMLP_07120 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Leptospira interrogans serovar Manilae
47% identity, 96% coverage

HVO_1054 aspartyl-tRNA(Asn) amidotransferase subunit A from Haloferax volcanii DS2
57% identity, 83% coverage

AF2329 Glu-tRNA amidotransferase, subunit A (gatA-2) from Archaeoglobus fulgidus DSM 4304
49% identity, 92% coverage

CPn0003 Glu tRNA Gln Amidotransferae (A subunit) from Chlamydophila pneumoniae CWL029
CP0772 glutamyl-tRNA amidotransferase subunit A from Chlamydophila pneumoniae AR39
47% identity, 92% coverage

CAB286 glutamyl-tRNA amidotransferase subunit A from Chlamydophila abortus S26/3
46% identity, 96% coverage

SSO0957 Glutamyl-tRNA amidotransferase, subunit A (gatA-2) from Sulfolobus solfataricus P2
42% identity, 97% coverage

FTL_1842 Glutamyl-tRNA(Gln) amidotransferase subunit A from Francisella tularensis subsp. holarctica
44% identity, 93% coverage

Q9LCX3 Glutamyl-tRNA(Gln) amidotransferase subunit A from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
50% identity, 95% coverage

3kfuE / Q9LCX3 Crystal structure of the transamidosome (see paper)
50% identity, 95% coverage

jhp0769 GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A from Helicobacter pylori J99
47% identity, 83% coverage

Q0VFI5 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Xenopus tropicalis
40% identity, 91% coverage

HP0830 Glu-tRNA(Gln) amidotransferase, subunit A (gatA) from Helicobacter pylori 26695
P56114 Glutamyl-tRNA(Gln) amidotransferase subunit A from Helicobacter pylori (strain ATCC 700392 / 26695)
48% identity, 83% coverage

Hbut_0594 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Hyperthermus butylicus DSM 5456
48% identity, 92% coverage

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
NP_060762 glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Homo sapiens
38% identity, 89% coverage

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
38% identity, 90% coverage

Q5FWT5 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Rattus norvegicus
38% identity, 90% coverage

F1QAJ4 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Danio rerio
36% identity, 90% coverage

NP_650775 Glutamyl-tRNA amidotransferase, subunit A from Drosophila melanogaster
41% identity, 86% coverage

O69768 Amidase from Pseudomonas putida
40% identity, 96% coverage

GATA_YEAST / Q03557 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; HMG2-induced ER-remodeling protein 2; Loss of respiratory capacity protein 6; EC 6.3.5.7 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
YMR293C Lrc6p from Saccharomyces cerevisiae
NP_014021 glutamyl-tRNA(Gln) amidotransferase subunit HER2 from Saccharomyces cerevisiae S288C
35% identity, 91% coverage

4n0iA / Q03557 Crystal structure of s. Cerevisiae mitochondrial gatfab in complex with glutamine (see paper)
37% identity, 83% coverage

MMP1510 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A from Methanococcus maripaludis S2
35% identity, 92% coverage

I7FF89 Amidase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
A0QRE7 Amidase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
MSMEG_1090 amidase from Mycobacterium smegmatis str. MC2 155
36% identity, 97% coverage

CNBD1400 hypothetical protein from Cryptococcus neoformans var. neoformans B-3501A
39% identity, 82% coverage

atzE / Q936X3 1-carboxybiuret hydrolase catalytic subunit (EC 3.5.1.3; EC 3.5.1.131) from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZE_PSESD / Q936X3 1-carboxybiuret hydrolase subunit AtzE; EC 3.5.1.131 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X3 1-carboxybiuret hydrolase (EC 3.5.1.131) from Pseudomonas sp. ADP (see paper)
6c6gA / Q936X3 An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme. Inhibitor bound complex. (see paper)
39% identity, 94% coverage

MPN237 Glu-tRNA amidotransferase, subunit A (gatA) from Mycoplasma pneumoniae M129
33% identity, 86% coverage

PFLU3208 putative glutamyl-tRNA amidotransferase subunit A from Pseudomonas fluorescens SBW25
37% identity, 81% coverage

AMDA_RHIRD / Q9AHE8 Urethanase; Enantioselective amidase; Ethyl carbamate-degrading amidase; EC 3.5.1.75 from Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) (see 3 papers)
35% identity, 78% coverage

Psyr_2208 Amidase from Pseudomonas syringae pv. syringae B728a
36% identity, 81% coverage

NEQ360 NEQ360 from Nanoarchaeum equitans Kin4-M
36% identity, 83% coverage

P22984 amidase (EC 3.5.1.4) from Rhodococcus erythropolis (see 2 papers)
Q7DKE4 amidase (EC 3.5.1.4) from Rhodococcus sp. N-771 (see paper)
amdA / AAA62721.1 enantiomer-selective amidase from Brevibacterium sp (see paper)
CAA38009.1 amidase from Rhodococcus sp (see paper)
39% identity, 80% coverage

3a1iA / Q7DKE4 Crystal structure of rhodococcus sp. N-771 amidase complexed with benzamide (see paper)
38% identity, 82% coverage

MG_099 glutamyl-tRNA amidotransferase subunit A from Mycoplasma genitalium G37
31% identity, 85% coverage

B1GY01 nitrilase (EC 3.5.5.1) from Rhodococcus erythropolis (see paper)
38% identity, 79% coverage

B4XEY3 Amidase (Fragment) from Rhodococcus erythropolis
38% identity, 79% coverage

ECA3499 probable amidase from Erwinia carotovora subsp. atroseptica SCRI1043
35% identity, 96% coverage

MKK01_RS13030 amidase from Klebsiella variicola subsp. variicola
36% identity, 82% coverage

Rv3375 PROBABLE AMIDASE AMID (ACYLAMIDASE) (ACYLASE) from Mycobacterium tuberculosis H37Rv
BCG_3446 putative amidase amiD from Mycobacterium bovis BCG str. Pasteur 1173P2
37% identity, 97% coverage

MSMEG_1088 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit from Mycobacterium smegmatis str. MC2 155
38% identity, 95% coverage

I4W82_22600 amidase from Klebsiella michiganensis
35% identity, 82% coverage

ACIAD1618 amidase from Acinetobacter sp. ADP1
34% identity, 83% coverage

cahA / BAC15598.1 carbaryl hydrolase from Arthrobacter sp. RC100 (see paper)
37% identity, 90% coverage

PputUW4_03350 amidase from Pseudomonas sp. UW4
36% identity, 82% coverage

amdA / P27765 nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis (see paper)
P27765 Amidase from Pseudomonas chlororaphis
36% identity, 81% coverage

JNO42_09225 amidase from Pseudomonas putida
34% identity, 80% coverage

WP_046196360 indoleacetamide hydrolase from Burkholderia contaminans
34% identity, 97% coverage

TTHA1797 probable amidase from Thermus thermophilus HB8
37% identity, 88% coverage

AF_1954 amidase from Archaeoglobus fulgidus DSM 4304
33% identity, 93% coverage

SHIWSC3_PJ0040 amidase from Shinella sp. WSC3-e
35% identity, 96% coverage

BMAA1320 amidase from Burkholderia mallei ATCC 23344
35% identity, 97% coverage

FAAH_MEDTR / G7ISB0 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
34% identity, 72% coverage

P95896 amidase (EC 3.5.1.4); nitrilase (EC 3.5.5.1) from Saccharolobus solfataricus (see 3 papers)
WP_009990155 amidase from Saccharolobus solfataricus P2
SSO2122 Glutamyl-tRNA amidotransferase, subunit A (gatA-3) from Sulfolobus solfataricus P2
30% identity, 82% coverage

PVX_089895 glutamyl-tRNA(Gln) amidotransferase subunit A, putative from Plasmodium vivax
30% identity, 81% coverage

mhp029 glutamyl-tRNA amidotransferase subunit A from Mycoplasma hyopneumoniae 232
29% identity, 85% coverage

BMEII0289 glutamyl-tRNA(GLN) amidotransferase subunit A from Brucella melitensis 16M
33% identity, 96% coverage

BCAM0265 putative amidase from Burkholderia cenocepacia J2315
36% identity, 95% coverage

BMEA_RS14895 amidase from Brucella melitensis ATCC 23457
33% identity, 96% coverage

MSMEG_3400 glutamyl-tRNA(Gln) amidotransferase subunit A from Mycobacterium smegmatis str. MC2 155
34% identity, 62% coverage

DDB_G0275967 amidase family protein from Dictyostelium discoideum AX4
31% identity, 69% coverage

WP_018091606 amidase family protein from Streptomyces sp. FxanaC1
37% identity, 98% coverage

FRAAL3665 putative amidase from Frankia alni ACN14a
34% identity, 95% coverage

AMID_RHORH / P84650 Enantioselective amidase; EC 3.5.1.4 from Rhodococcus rhodochrous
36% identity, 80% coverage

FAAH_ORYSJ / Q0JFH7 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Oryza sativa subsp. japonica (Rice) (see paper)
32% identity, 70% coverage

F6B93_19200 amidase from Mycobacterium spongiae
35% identity, 93% coverage

PA4342 probable amidase from Pseudomonas aeruginosa PAO1
33% identity, 96% coverage

Bdiaspc4_22345 amidase from Bradyrhizobium diazoefficiens
bll4303 bll4303 from Bradyrhizobium japonicum USDA 110
34% identity, 95% coverage

6diiH / Q7XJJ7 Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
32% identity, 71% coverage

FAAH_ARATH / Q7XJJ7 Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana (Mouse-ear cress) (see 10 papers)
Q7XJJ7 fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana (see paper)
NP_201249 fatty acid amide hydrolase from Arabidopsis thaliana
AT5G64440 AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase from Arabidopsis thaliana
32% identity, 72% coverage

AFUA_5G09140 amidase, putative from Aspergillus fumigatus Af293
33% identity, 77% coverage

1m21A / Q8RJN5 Crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin (see paper)
35% identity, 94% coverage

DKG71_30355 amidase from Streptomyces sp. NEAU-S7GS2
33% identity, 97% coverage

MANHY_PSEPU / Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
32% identity, 95% coverage

WP_021076225 indoleacetamide hydrolase from Bradyrhizobium sp.
33% identity, 97% coverage

pam / GI|19744118 peptide amidase from Stenotrophomonas maltophilia (see paper)
pam / CAC93616.1 peptide amidase from Stenotrophomonas maltophilia (see paper)
Q8RJN5 Amidase from Stenotrophomonas maltophilia
35% identity, 86% coverage

bll2914 bll2914 from Bradyrhizobium japonicum USDA 110
34% identity, 84% coverage

F6N111 aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp. M1-1 (see paper)
G9FKH7 amidase (EC 3.5.1.4) from Paracoccus sp. (see paper)
28% identity, 100% coverage

VDAG_09707 amidase from Verticillium dahliae VdLs.17
32% identity, 76% coverage

Q8I1S6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Plasmodium falciparum (see paper)
PF3D7_0416100 glutamyl-tRNA(Gln) amidotransferase subunit A from Plasmodium falciparum 3D7
45% identity, 22% coverage

FRAAL0363 putative amidase from Frankia alni ACN14a
35% identity, 90% coverage

FQ085_10470 amidase family protein from Planococcus sp. ANT_H30
30% identity, 98% coverage

tms2 / P0A2X0 indoleacetamide hydrolase (EC 3.5.1.4) from Rhizobium radiobacter (see paper)
31% identity, 94% coverage

RHE_RS25710 amidase from Rhizobium etli CFN 42
34% identity, 84% coverage

ST0478 396aa long hypothetical enantiomer-selective amidase from Sulfolobus tokodaii str. 7
30% identity, 90% coverage

SLIV_06435 amidase family protein from Streptomyces lividans TK24
34% identity, 87% coverage

BPSS2307 putative amidase from Burkholderia pseudomallei K96243
37% identity, 85% coverage

A0A509AHQ9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Plasmodium berghei (see paper)
35% identity, 39% coverage

PP0613 amidase family protein from Pseudomonas putida KT2440
31% identity, 93% coverage

ArtHe_01245 amidase from Arthrobacter sp. Helios
34% identity, 87% coverage

hydA / A0A0A1H115 4-hydroxybenzoate 1-phenylethylidene hydrazidase from Microbacterium hydrocarbonoxydans (see paper)
31% identity, 97% coverage

YP_001967410 Iah from Agrobacterium tumefaciens
31% identity, 94% coverage

LOC107319872 fatty acid amide hydrolase-like from Coturnix japonica
33% identity, 69% coverage

WP_010677135 amidase family protein from Bacillus timonensis
33% identity, 96% coverage

5h6sC Crystal structure of hydrazidase s179a mutant complexed with a substrate (see paper)
31% identity, 97% coverage

P25016 Indoleacetamide hydrolase from Agrobacterium vitis
31% identity, 83% coverage

AAM_RHOER / K9NBS6 Acylamidase; EC 3.5.1.13; EC 3.5.1.14; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus) (see paper)
31% identity, 97% coverage

PA0202 probable amidase from Pseudomonas aeruginosa PAO1
31% identity, 99% coverage

blr7896 blr7896 from Bradyrhizobium japonicum USDA 110
32% identity, 97% coverage

RHE_RS01105 amidase from Rhizobium etli CFN 42
30% identity, 98% coverage

PputW619_2551 amidase from Pseudomonas putida W619
31% identity, 94% coverage

D3NY90 Amidase from Azospirillum sp. (strain B510)
31% identity, 93% coverage

RHA1_RS22310 amidase from Rhodococcus jostii RHA1
33% identity, 93% coverage

An02g00190 uncharacterized protein from Aspergillus niger
30% identity, 80% coverage

UV8b_01984 uncharacterized protein from Ustilaginoidea virens
30% identity, 86% coverage

M5E2I7 Amidase from Thalassolituus oleivorans MIL-1
29% identity, 95% coverage

SACE_3403 amidase from Saccharopolyspora erythraea NRRL 2338
41% identity, 53% coverage

SSO0765 Glutamyl-tRNA amidotransferase, subunit A (gatA-1) from Sulfolobus solfataricus P2
31% identity, 84% coverage

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
30% identity, 97% coverage

JJQ59_09300 amidase from Cupriavidus necator
30% identity, 97% coverage

Pchl3084_1486 amidase family protein from Pseudomonas chlororaphis subsp. aureofaciens 30-84
32% identity, 84% coverage

LOC101214819 probable amidase At4g34880 from Cucumis sativus
38% identity, 56% coverage

jpw_13420 amidase from Pseudomonas asiatica
31% identity, 94% coverage

U5YQN5 Aspartyl-tRNA amidotransferase subunit A/glutamyl-tRNA(Gln) amidotransferase subunit a from Streptomyces sp. XY332
33% identity, 97% coverage

PA0704 amidase from Pseudomonas aeruginosa PAO1
33% identity, 97% coverage

AT5G07360 amidase family protein from Arabidopsis thaliana
26% identity, 69% coverage

BC2054 Glutamyl-tRNA(Gln) amidotransferase subunit A from Bacillus cereus ATCC 14579
29% identity, 96% coverage

XCC0292 Glu-tRNAGln amidotransferase A subunit from Xanthomonas campestris pv. campestris str. ATCC 33913
34% identity, 94% coverage

FGSG_04022 hypothetical protein from Fusarium graminearum PH-1
36% identity, 48% coverage

AFUA_1G14880 N-acylethanolamine amidohydrolase, putative from Aspergillus fumigatus Af293
30% identity, 72% coverage

A6F504 Amidase from Marinobacter algicola DG893
29% identity, 95% coverage

blr3288 blr3288 from Bradyrhizobium japonicum USDA 110
34% identity, 97% coverage

ABD05_RS34310 amidase family protein from Burkholderia pyrrocinia
33% identity, 97% coverage

lpg2355 amidase (enantiomer selective) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
29% identity, 95% coverage

LOC18033993 probable amidase At4g34880 from Citrus x clementina
37% identity, 58% coverage

glr0961 probable urea amidolyase from Gloeobacter violaceus PCC 7421
36% identity, 66% coverage

A0W34_24065 amidase from Rhodococcus sp. BH4
29% identity, 95% coverage

SAV_6697 amidase from Streptomyces avermitilis MA-4680
34% identity, 77% coverage

LOC101257218 probable amidase At4g34880 from Solanum lycopersicum
30% identity, 95% coverage

iaaH / P06618 indoleacetamide hydrolase (EC 3.5.1.4) from Pseudomonas savastanoi (see 3 papers)
P06618 Indoleacetamide hydrolase from Pseudomonas savastanoi
31% identity, 87% coverage

FAAH2 / Q6GMR7 fatty-acid amide hydrolase 2 (EC 3.5.1.99; EC 3.5.1.60) from Homo sapiens (see 2 papers)
FAAH2_HUMAN / Q6GMR7 Fatty-acid amide hydrolase 2; Amidase domain-containing protein; Anandamide amidohydrolase 2; Oleamide hydrolase 2; EC 3.5.1.99 from Homo sapiens (Human) (see 2 papers)
B2C6G4 fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see paper)
Q6GMR7 amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see 2 papers)
NP_777572 fatty-acid amide hydrolase 2 isoform 1 from Homo sapiens
26% identity, 88% coverage

CTCNB1_RS06560 amidase from Comamonas thiooxydans
30% identity, 87% coverage

iaaH / GB|AAA17679.1 indoleacetamide hydrolase; EC 3.5.1.- from Pseudomonas syringae pv. syringae (see paper)
P52831 Indoleacetamide hydrolase from Pseudomonas syringae pv. syringae
31% identity, 97% coverage

W6QRS4 Allophanate hydrolase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
34% identity, 66% coverage

R4SWV0 Amidase from Amycolatopsis keratiniphila
34% identity, 97% coverage

RGM3321_01475 amidase family protein from Pseudomonas sp. RGM 3321
32% identity, 92% coverage

LOC113823280 epidermal growth factor receptor-like from Penaeus vannamei
35% identity, 25% coverage

XAC4327 urea amidolyase from Xanthomonas axonopodis pv. citri str. 306
31% identity, 79% coverage

NCU04092 N-acylethanolamine amidohydrolase from Neurospora crassa OR74A
28% identity, 67% coverage

LOC101204792 probable amidase At4g34880 from Cucumis sativus
30% identity, 93% coverage

SPO2938 amidase family protein from Silicibacter pomeroyi DSS-3
28% identity, 93% coverage

Rv2363 amidase from Mycobacterium tuberculosis H37Rv
Mb2384 PROBABLE AMIDASE AMIA2 (AMINOHYDROLASE) from Mycobacterium bovis AF2122/97
34% identity, 94% coverage

FOXG_11632 hypothetical protein from Fusarium oxysporum f. sp. lycopersici 4287
36% identity, 49% coverage

Sb05g020350 No description from Sorghum bicolor
28% identity, 74% coverage

PSPTO_4204 amidase family protein from Pseudomonas syringae pv. tomato str. DC3000
32% identity, 85% coverage

FGSG_10913 hypothetical protein from Fusarium graminearum PH-1
32% identity, 22% coverage

C3UWD1 aryl-acylamidase (EC 3.5.1.13) from bacterium CSBL00001 (see 2 papers)
30% identity, 93% coverage

BC1G_09997 hypothetical protein from Botrytis cinerea B05.10
28% identity, 77% coverage

Saro_3057 Amidase from Novosphingobium aromaticivorans DSM 12444
33% identity, 93% coverage

H16_B1874 Amidase from Ralstonia eutropha H16
41% identity, 45% coverage

K3ZSH2 Amidase domain-containing protein from Setaria italica
38% identity, 54% coverage

4yjiA / C3UWD1 The crystal structure of a bacterial aryl acylamidase belonging to the amidase signature (as) enzymes family (see paper)
30% identity, 94% coverage

ABUW_1948 indoleacetamide hydrolase from Acinetobacter baumannii
27% identity, 96% coverage

DUR1_LACKL / A5H0J2 Urea amidolyase; Pyrimidine-degrading protein 13,15; Uracil catabolism protein 3,5; EC 6.3.4.6; EC 3.5.1.54 from Lachancea kluyveri (Yeast) (Saccharomyces kluyveri) (see paper)
30% identity, 24% coverage

YI01_SCHPO / Q9URY4 Putative amidase C869.01; EC 3.5.1.4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC869.01 amidase (predicted) from Schizosaccharomyces pombe
39% identity, 44% coverage

LOC110029361 putative amidase C869.01 from Phalaenopsis equestris
36% identity, 56% coverage

TERG_00010 uncharacterized protein from Trichophyton rubrum CBS 118892
35% identity, 50% coverage

XP_011529069 fatty-acid amide hydrolase 2 isoform X2 from Homo sapiens
27% identity, 89% coverage

KR76_17995 amidase from Pimelobacter simplex
34% identity, 91% coverage

bll0246 indoleacetamide hydrolase from Bradyrhizobium japonicum USDA 110
P59385 Indoleacetamide hydrolase from Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
29% identity, 90% coverage

SMc02881 PUTATIVE AMIDASE PROTEIN from Sinorhizobium meliloti 1021
35% identity, 88% coverage

Q9ALV2 allophanate hydrolase (EC 3.5.1.54) from Enterobacter cloacae (see 2 papers)
32% identity, 71% coverage

MT3264 amidase from Mycobacterium tuberculosis CDC1551
44% identity, 39% coverage

Rv3175 amidase from Mycobacterium tuberculosis H37Rv
44% identity, 39% coverage

A2965_ARTBC / D4B3C8 Putative amidase ARB_02965; EC 3.5.1.- from Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes) (see 2 papers)
36% identity, 46% coverage

Q0BRB0 allophanate hydrolase (EC 3.5.1.54) from Granulibacter bethesdensis (see 2 papers)
34% identity, 72% coverage

4gysB / Q0BRB0 Granulibacter bethesdensis allophanate hydrolase co-crystallized with malonate (see paper)
34% identity, 87% coverage

AMI4G_ARATH / A0A1P8B760 Probable amidase At4g34880; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_001329257 Amidase family protein from Arabidopsis thaliana
31% identity, 90% coverage

A9CMR9 Amidase homolog from Saccharomyces pastorianus
40% identity, 42% coverage

BTH_II1476 6-aminohexanoate-cyclic-dimer hydrolase from Burkholderia thailandensis E264
31% identity, 94% coverage

GRMZM2G111309 amidase precursor from Zea mays
38% identity, 51% coverage

SS1G_11068 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
36% identity, 49% coverage

BCAM0538 putative amidase from Burkholderia cenocepacia J2315
37% identity, 59% coverage

HMPREF0023_2956 amidase from Acinetobacter sp. ATCC 27244
34% identity, 50% coverage

C0J08_14135 amidase from Marinomonas sp. CT5
29% identity, 97% coverage

ESA_01767 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
34% identity, 71% coverage

PSHAa0910 putative allophanate hydrolase from Pseudoalteromonas haloplanktis TAC125
31% identity, 87% coverage

FQ188_09805 amidase from Rhodococcus sp. ANT_H53B
44% identity, 47% coverage

A0A077JIE7 acyl-homoserine-lactone acylase (EC 3.5.1.97) from Acinetobacter sp. Ooi24 (see paper)
40% identity, 40% coverage

N8UB59 Amidase domain-containing protein from Acinetobacter sp. CIP 102129
40% identity, 40% coverage

A0A1D8PDC6 allophanate hydrolase (EC 3.5.1.54) from Candida albicans (see paper)
XP_713590 bifunctional urea carboxylase/allophanate hydrolase from Candida albicans SC5314
32% identity, 23% coverage

DUR1,2 likely multifunctional urea amidolyase from Candida albicans (see paper)
32% identity, 23% coverage

FQ188_16180 amidase from Rhodococcus sp. ANT_H53B
31% identity, 92% coverage

Bphy_7768 amidase from Burkholderia phymatum STM815
BPHY_RS38320, Bphy_7768 amidase family protein from Paraburkholderia caribensis
38% identity, 42% coverage

1o9oA / Q9ZIV5 Crystal structure of the s131a mutant of malonamidase e2 complexed with malonamate from bradyrhizobium japonicum (see paper)
31% identity, 85% coverage

atzF / Q936X2 allophanate hydrolase subunit from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZF_PSESD / Q936X2 Allophanate hydrolase; EC 3.5.1.54 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X2 allophanate hydrolase (EC 3.5.1.54) from Pseudomonas sp. ADP (see paper)
30% identity, 75% coverage

A6739_RS07555 amidase from Acinetobacter baumannii
31% identity, 81% coverage

P13397 6-aminohexanoate-cyclic-dimer hydrolase from Pseudomonas sp. (strain NK87)
37% identity, 49% coverage

G8E09_08615 amidase from Acinetobacter pittii
32% identity, 81% coverage

DUR1,2 / P32528 urea amidolyase (EC 6.3.4.6) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
DUR1_YEAST / P32528 Urea amidolyase; EC 6.3.4.6; EC 3.5.1.54 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
P32528 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Saccharomyces cerevisiae (see 3 papers)
YBR208C Dur1,2p from Saccharomyces cerevisiae
30% identity, 22% coverage

BB1142 putative amidase from Bordetella bronchiseptica RB50
48% identity, 32% coverage

B7XBZ9 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Cupriavidus sp. U124 (see 2 papers)
38% identity, 49% coverage

bll6733 bll6733 from Bradyrhizobium japonicum USDA 110
30% identity, 99% coverage

B5MF68 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Rhodococcus sp. U-224 (see paper)
37% identity, 49% coverage

B7XBZ7 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Cupriavidus sp. T7 (see 2 papers)
B7XBZ8 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Acidovorax sp. T31 (see 2 papers)
38% identity, 49% coverage

nylA / P13398 6-aminohexanoate cyclic dimer hydrolase monomer (EC 3.5.2.12) from Paenarthrobacter ureafaciens (see 4 papers)
NYLA_PAEUR / P13398 6-aminohexanoate-cyclic-dimer hydrolase; Nylon oligomers-degrading enzyme EI; EC 3.5.2.12 from Paenarthrobacter ureafaciens (see paper)
37% identity, 49% coverage

LOC4335110 probable amidase At4g34880 from Oryza sativa Japonica Group
37% identity, 50% coverage

B7XC00 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) from Sphingomonas sp. U238 (see 2 papers)
37% identity, 49% coverage

3a2qA / P13398 Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
37% identity, 50% coverage

A6A40_22755 amidase from Azospirillum humicireducens
30% identity, 96% coverage

Q87XD4 Amidase family protein from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
PSPTO_4244 amidase family protein from Pseudomonas syringae pv. tomato str. DC3000
33% identity, 67% coverage

CC1323 6-aminohexanoate-cyclic-dimer hydrolase, putative from Caulobacter crescentus CB15
29% identity, 88% coverage

Q6CP22 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Kluyveromyces lactis (see 3 papers)
XP_454317 uncharacterized protein from Kluyveromyces lactis
32% identity, 22% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory