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PaperBLAST

PaperBLAST Hits for sp|Q9K8V5|ARGD_HALH5 Acetylornithine aminotransferase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=argD PE=3 SV=1 (384 a.a., MSHLFPTYAK...)

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Found 250 similar proteins in the literature:

ATE50_RS13990 acetylornithine transaminase from Bacillus velezensis
60% identity, 99% coverage

GL331_10540 acetylornithine transaminase from Bacillus velezensis
60% identity, 99% coverage

GBAA4352 acetylornithine aminotransferase from Bacillus anthracis str. 'Ames Ancestor'
60% identity, 99% coverage

BSU11220 acetylornithine aminotransferase from Bacillus subtilis subsp. subtilis str. 168
P36839 Acetylornithine aminotransferase from Bacillus subtilis (strain 168)
60% identity, 98% coverage

lmo1588 highly similar to N-acetylornithine aminotransferase from Listeria monocytogenes EGD-e
53% identity, 98% coverage

KO21_RS08195 acetylornithine transaminase from Listeria monocytogenes
53% identity, 98% coverage

Q71Z79 Acetylornithine aminotransferase from Listeria monocytogenes serotype 4b (strain F2365)
53% identity, 98% coverage

UAI_00297 acetylornithine transaminase from Enterococcus malodoratus ATCC 43197
52% identity, 98% coverage

T303_03440 acetylornithine transaminase from Streptococcus thermophilus ASCC 1275
52% identity, 98% coverage

Teth39_0226 acetylornithine and succinylornithine aminotransferase from Thermoanaerobacter ethanolicus ATCC 33223
47% identity, 95% coverage

SGO_1566 Acetylornithine aminotransferase (ACOAT) from Streptococcus gordonii str. Challis substr. CH1
49% identity, 99% coverage

SSA_0760 Acetylornithine aminotransferase, putative from Streptococcus sanguinis SK36
48% identity, 99% coverage

GSU0151 acetylornithine aminotransferase from Geobacter sulfurreducens PCA
46% identity, 95% coverage

OKIT_0630 acetylornithine transaminase from Oenococcus kitaharae DSM 17330
48% identity, 99% coverage

CC0584 succinylornithine transaminase, putative from Caulobacter crescentus CB15
46% identity, 95% coverage

CA_C2388, CEA_G2403 aspartate aminotransferase family protein from Clostridium acetobutylicum ATCC 824
CAC2388 N-acetylornithine aminotransferase from Clostridium acetobutylicum ATCC 824
44% identity, 97% coverage

STH2881 N-acetylornithine aminotransferase from Symbiobacterium thermophilum IAM 14863
45% identity, 93% coverage

B1XNF8 acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp. PCC 7002 (see paper)
SYNPCC7002_A0326 acetylornithine aminotransferase from Synechococcus sp. PCC 7002
44% identity, 90% coverage

tlr1328 N-acetylornithine aminotransferase from Thermosynechococcus elongatus BP-1
46% identity, 90% coverage

Atu0428 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein from Agrobacterium tumefaciens str. C58 (Cereon)
Q8UI71 Acetylornithine aminotransferase from Agrobacterium fabrum (strain C58 / ATCC 33970)
46% identity, 93% coverage

2eh6A / O66442 Crystal structure of acetylornithine aminotransferase from aquifex aeolicus vf5
45% identity, 98% coverage

DDA3937_RS19450 aspartate aminotransferase family protein from Dickeya dadantii 3937
44% identity, 92% coverage

CwatDRAFT_5161 Acetylornithine and succinylornithine aminotransferase from Crocosphaera watsonii WH 8501
43% identity, 91% coverage

slr1022 / P73133 bifunctional acetylornithine transaminase/4-aminobutyrate—2-oxoglutarate transaminase (EC 2.6.1.19; EC 2.6.1.11) from Synechocystis sp. (strain PCC 6803 / Kazusa) (see 4 papers)
ARGD_SYNY3 / P73133 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) (see 2 papers)
P73133 acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp. PCC 6803 (see paper)
slr1022 N-acetylornithine aminotransferase from Synechocystis sp. PCC 6803
45% identity, 88% coverage

alr1080 N-acetylornithine aminotransferase from Nostoc sp. PCC 7120
45% identity, 88% coverage

AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense Sp245
45% identity, 96% coverage

AZOBR_RS19025 aspartate aminotransferase family protein from Azospirillum baldaniorum
45% identity, 96% coverage

BAU10_13850 aspartate aminotransferase family protein from Vibrio alginolyticus
45% identity, 93% coverage

C6AZH0 Acetylornithine aminotransferase from Rhizobium leguminosarum bv. trifolii (strain WSM1325)
45% identity, 93% coverage

Ava_3730 Acetylornithine and succinylornithine aminotransferase from Anabaena variabilis ATCC 29413
45% identity, 88% coverage

Sant_0398 aspartate aminotransferase family protein from Sodalis praecaptivus
43% identity, 93% coverage

ECA4065 aspartate aminotransferase family protein from Pectobacterium atrosepticum SCRI1043
43% identity, 92% coverage

Cthe_1866 acetylornithine aminotransferase from Clostridium thermocellum ATCC 27405
45% identity, 92% coverage

ACICU_01135 ornithine/acetylornithine aminotransferase from Acinetobacter baumannii ACICU
45% identity, 91% coverage

VpaChn25_2721 aspartate aminotransferase family protein from Vibrio parahaemolyticus
44% identity, 93% coverage

4jevB / P40732 N-acetylornithine aminotransferase from s. Typhimurium complexed with gabaculine
44% identity, 93% coverage

ARGD_SALTY / P40732 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
STM3468 acetylornithine transaminase (NAcOATase and DapATase) from Salmonella typhimurium LT2
44% identity, 92% coverage

BAB1_0331 Acetylornithine and succinylornithine aminotransferase:Aminotransferase class-III from Brucella melitensis biovar Abortus 2308
BMEI1621 aspartate aminotransferase family protein from Brucella melitensis bv. 1 str. 16M
44% identity, 94% coverage

AWY96_RS23480 aspartate aminotransferase family protein from Serratia plymuthica
43% identity, 93% coverage

SEN3295 acetylornithine aminotransferase from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
44% identity, 92% coverage

BPSL2390 succinylornithine transaminase from Burkholderia pseudomallei K96243
42% identity, 93% coverage

STM14_4175 aspartate aminotransferase family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
44% identity, 92% coverage

W6QU95 Acetylornithine aminotransferase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
44% identity, 93% coverage

PBPRA0289 putative acetylornithine aminotransferase from Photobacterium profundum SS9
42% identity, 92% coverage

TTHA1755 acetylornithine/acetyl-lysine aminotransferase from Thermus thermophilus HB8
43% identity, 94% coverage

Synpcc7942_0943 acetylornithine and succinylornithine aminotransferases from Synechococcus elongatus PCC 7942
44% identity, 88% coverage

BCAL1059 succinylornithine transaminase from Burkholderia cenocepacia J2315
42% identity, 95% coverage

YPTB1959 succinylornithine aminotransferase from Yersinia pseudotuberculosis IP 32953
44% identity, 91% coverage

ECs4210 acetylornithine delta-aminotransferase from Escherichia coli O157:H7 str. Sakai
Z4720 acetylornithine delta-aminotransferase from Escherichia coli O157:H7 EDL933
43% identity, 91% coverage

BPP2543 acetylornithine aminotransferase from Bordetella parapertussis 12822
44% identity, 96% coverage

UTI89_C3862 acetylornithine aminotransferase from Escherichia coli UTI89
43% identity, 91% coverage

Dtu / b3359 N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
argD / P18335 N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli (strain K12) (see 12 papers)
ARGD_ECOLI / P18335 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli (strain K12) (see paper)
b3359 bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase from Escherichia coli str. K-12 substr. MG1655
NP_417818 N-acetylornithine aminotransferase/N-succinyldiaminopimelate aminotransferase from Escherichia coli str. K-12 substr. MG1655
43% identity, 91% coverage

1vefA / Q5SHH5 Acetylornithine aminotransferase from thermus thermophilus hb8
43% identity, 96% coverage

PMT0331 Acetylornithine and succinylornithine aminotransferases from Prochlorococcus marinus str. MIT 9313
45% identity, 89% coverage

lysJ / Q93R93 L-2-aminoadipate semialdehyde transaminase monomer (EC 2.6.1.118) from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
LYSJ_THET2 / Q93R93 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
Q93R93 [amino group carrier protein]-gamma-(L-lysyl)-L-glutamate aminotransferase (EC 2.6.1.118) from Thermus thermophilus (see 2 papers)
TTC1393 No description from Thermus thermophilus HB27
43% identity, 94% coverage

YPO1962 succinylornithine aminotransferase from Yersinia pestis CO92
43% identity, 91% coverage

bglu_1g10100 Succinylornithine transaminase from Burkholderia glumae BGR1
42% identity, 93% coverage

YPTS_2011 succinylornithine transaminase family protein from Yersinia pseudotuberculosis PB1/+
YPK_2229 succinylornithine transaminase family protein from Yersinia pseudotuberculosis YPIII
43% identity, 84% coverage

CYA_1537 acetylornithine transaminase from Synechococcus sp. JA-3-3Ab
44% identity, 90% coverage

NGO_0646 aspartate aminotransferase family protein from Neisseria gonorrhoeae FA 1090
41% identity, 95% coverage

PP_4481 aspartate aminotransferase family protein from Pseudomonas putida KT2440
PP4481 acetylornithine aminotransferase from Pseudomonas putida KT2440
42% identity, 92% coverage

PGA1_c24230 aspartate aminotransferase family protein from Phaeobacter inhibens DSM 17395
42% identity, 96% coverage

WH5701_07406 acetylornithine aminotransferase from Synechococcus sp. WH 5701
46% identity, 87% coverage

DET1258 acetylornithine aminotransferase from Dehalococcoides ethenogenes 195
43% identity, 95% coverage

VC2618 acetylornithine aminotransferase from Vibrio cholerae O1 biovar eltor str. N16961
42% identity, 93% coverage

TM1785 acetylornithine aminotransferase from Thermotoga maritima MSB8
43% identity, 97% coverage

2ordA / Q9X2A5 Crystal structure of acetylornithine aminotransferase (ec 2.6.1.11) (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
43% identity, 95% coverage

PMI_RS13935 aspartate aminotransferase family protein from Proteus mirabilis HI4320
PMI2821 acetylornithine/succinyldiaminopimelate aminotransferase from Proteus mirabilis HI4320
43% identity, 93% coverage

SAR11_0502 Acetylornithine aminotransferase from Candidatus Pelagibacter ubique HTCC1062
43% identity, 97% coverage

CYB_1419 acetylornithine transaminase from Synechococcus sp. JA-2-3B'a(2-13)
44% identity, 86% coverage

WH7805_05656 acetylornithine aminotransferase from Synechococcus sp. WH 7805
44% identity, 93% coverage

YE2469 succinylornithine aminotransferase from Yersinia enterocolitica subsp. enterocolitica 8081
42% identity, 92% coverage

TSC_c03550 [LysW]-aminoadipate semialdehyde transaminase LysJ from Thermus scotoductus SA-01
42% identity, 93% coverage

ACIAD1284 succinylornithine transaminase (also has acetylornitine transaminase activity, PLP-dependent) (carbon starvation protein C) from Acinetobacter sp. ADP1
43% identity, 94% coverage

B8CGH5 acetylornithine transaminase from Thalassiosira pseudonana
THAPSDRAFT_270136 n-acetylornithine aminotransferase from Thalassiosira pseudonana CCMP1335
42% identity, 78% coverage

SPISAL_06590 acetylornithine transaminase from Spiribacter salinus M19-40
44% identity, 94% coverage

ARGD_ARATH / Q9M8M7 Acetylornithine aminotransferase, chloroplastic/mitochondrial; ACOAT; Acetylornithine transaminase; AOTA; Protein HOPW1-1-INTERACTING 1; EC 2.6.1.11 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_178175 HOPW1-1-interacting 1 from Arabidopsis thaliana
AT1G80600 WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase from Arabidopsis thaliana
43% identity, 82% coverage

lpg2968 N-acetylornithine aminotransferase ArgD from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
42% identity, 97% coverage

PD0654 succinylornithine aminotransferase from Xylella fastidiosa Temecula1
44% identity, 91% coverage

Syncc9605_0858 acetylornithine and succinylornithine aminotransferases from Synechococcus sp. CC9605
43% identity, 88% coverage

D4I307 Acetylornithine/succinyldiaminopimelate aminotransferase from Erwinia amylovora (strain CFBP1430)
EAMY_3415 bifunctional acetylornithine delta-aminotransferase / N-succinyldiaminopimelate aminotransferase from Erwinia amylovora CFBP1430
41% identity, 93% coverage

A7ME32 Acetylornithine/succinyldiaminopimelate aminotransferase from Cronobacter sakazakii (strain ATCC BAA-894)
42% identity, 90% coverage

aruC / O30508 succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
ARUC_PSEAE / O30508 Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
O30508 succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas aeruginosa (see paper)
PA0895 N-succinylglutamate 5-semialdehyde dehydrogenase from Pseudomonas aeruginosa PAO1
41% identity, 92% coverage

BWI76_RS11670 Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis M5al
41% identity, 91% coverage

PA14_52720 N-succinylglutamate 5-semialdehyde dehydrogenase from Pseudomonas aeruginosa UCBPP-PA14
41% identity, 92% coverage

Tter_0321 acetylornithine and succinylornithine aminotransferase from Thermobaculum terrenum ATCC BAA-798
39% identity, 96% coverage

A8J933 acetylornithine transaminase (EC 2.6.1.11) from Chlamydomonas reinhardtii (see paper)
XP_001698091 uncharacterized protein from Chlamydomonas reinhardtii
40% identity, 83% coverage

PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas simiae WCS417
42% identity, 92% coverage

KP1_2498 putative succinylornithine transaminase from Klebsiella pneumoniae NTUH-K2044
41% identity, 94% coverage

Pro1375 Ornithine/acetylornithine aminotransferase from Prochlorococcus marinus str. SS120
42% identity, 94% coverage

FGSG_01573 acetylornithine aminotransferase from Fusarium graminearum PH-1
42% identity, 83% coverage

Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas fluorescens FW300-N1B4
43% identity, 92% coverage

B7GEJ6 acetylornithine transaminase from Phaeodactylum tricornutum (strain CCAP 1055/1)
40% identity, 77% coverage

XF1427 succinylornithine aminotransferase from Xylella fastidiosa 9a5c
Q9PDF2 Acetylornithine aminotransferase from Xylella fastidiosa (strain 9a5c)
XF_RS06015 acetylornithine transaminase from Xylella fastidiosa 9a5c
43% identity, 91% coverage

NCU05410 acetylornithine aminotransferase from Neurospora crassa OR74A
41% identity, 83% coverage

PMN2A_0867 Aminotransferase class-III pyridoxal-phosphate:Acetylornithin... from Prochlorococcus marinus str. NATL2A
42% identity, 90% coverage

HP15_3042 acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) from Marinobacter adhaerens HP15
41% identity, 93% coverage

Syncc9902_1534 Acetylornithine and succinylornithine aminotransferase from Synechococcus sp. CC9902
41% identity, 94% coverage

PSHAa0194 acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent from Pseudoalteromonas haloplanktis TAC125
40% identity, 93% coverage

A8A0U0 Succinylornithine transaminase from Escherichia coli O9:H4 (strain HS)
43% identity, 89% coverage

A0A140N9B6 succinylornithine transaminase (EC 2.6.1.81) from Escherichia coli (see paper)
42% identity, 89% coverage

PSHAb0428 putative acetylornithine transaminase from Pseudoalteromonas haloplanktis TAC125
40% identity, 93% coverage

4adbB / P77581 Structural and functional study of succinyl-ornithine transaminase from e. Coli (see paper)
42% identity, 91% coverage

AstC / b1748 succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
astC / P77581 succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11) from Escherichia coli (strain K12) (see 6 papers)
ASTC_ECOLI / P77581 Succinylornithine transaminase; SOAT; Carbon starvation protein C; Succinylornithine aminotransferase; EC 2.6.1.81 from Escherichia coli (strain K12) (see paper)
astC / RF|NP_416262.1 succinylornithine transaminase; EC 2.6.1.81 from Escherichia coli K12 (see 5 papers)
A7ZML6 Succinylornithine transaminase from Escherichia coli O139:H28 (strain E24377A / ETEC)
b1748 succinylornithine transaminase, PLP-dependent from Escherichia coli str. K-12 substr. MG1655
42% identity, 89% coverage

ECs2454 acetylornithine delta-aminotransferase from Escherichia coli O157:H7 str. Sakai
Z2780 acetylornithine delta-aminotransferase from Escherichia coli O157:H7 EDL933
42% identity, 89% coverage

PMM1301 Acetylornithine and succinylornithine aminotransferases from Prochlorococcus marinus sp. MED4
41% identity, 90% coverage

An15g02360 uncharacterized protein from Aspergillus niger
39% identity, 79% coverage

WP_038545752 aspartate aminotransferase family protein from Synechococcus sp. KORDI-100
41% identity, 95% coverage

ACIAD1231 acetylornithine aminotransferase from Acinetobacter sp. ADP1
41% identity, 92% coverage

Q688Q8 acetylornithine transaminase from Oryza sativa subsp. japonica
40% identity, 81% coverage

SAUSA300_0187 ornithine--oxo-acid transaminase from Staphylococcus aureus subsp. aureus USA300_FPR3757
42% identity, 94% coverage

SA0179 ornithine aminotransferase from Staphylococcus aureus subsp. aureus N315
41% identity, 94% coverage

Pchl3084_2275 aspartate aminotransferase family protein from Pseudomonas chlororaphis subsp. aureofaciens 30-84
41% identity, 92% coverage

BCAL2701 aminotransferase class-III from Burkholderia cenocepacia J2315
41% identity, 93% coverage

HMPREF0010_00392 aspartate aminotransferase family protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
41% identity, 91% coverage

RS9917_02041 Acetylornithine and succinylornithine aminotransferase from Synechococcus sp. RS9917
42% identity, 93% coverage

BPSL0926 aminotransferase class-III from Burkholderia pseudomallei K96243
42% identity, 93% coverage

MSMEG_3773 acetylornithine aminotransferase from Mycobacterium smegmatis str. MC2 155
MSMEG_3773 acetylornithine transaminase from Mycolicibacterium smegmatis MC2 155
43% identity, 96% coverage

NWMN_0129 ornithine aminotransferase from Staphylococcus aureus subsp. aureus str. Newman
41% identity, 94% coverage

SYNW1634 putative N-acetylornithine aminotransferase from Synechococcus sp. WH 8102
41% identity, 88% coverage

AFUA_2G12470, Afu2g12470 acetylornithine aminotransferase from Aspergillus fumigatus Af293
38% identity, 77% coverage

HMPREF0389_01570 aspartate aminotransferase family protein from Filifactor alocis ATCC 35896
41% identity, 94% coverage

Q5JFW3 Putative [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
TK0275 N2-acetyl-lysine aminotransferase from Thermococcus kodakaraensis KOD1
41% identity, 98% coverage

Dgeo_1416 acetylornithine and succinylornithine aminotransferases from Deinococcus geothermalis DSM 11300
40% identity, 91% coverage

lysJ / Q4JAP8 [amino group carrier protein]-C-terminal-L-glutamyl-γ-L-lysine aminotransferase (EC 2.6.1.118; EC 2.6.1.124) from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see 2 papers)
Saci_0755 acetylornithine aminotransferase from Sulfolobus acidocaldarius DSM 639
Q4JAP8 [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
39% identity, 97% coverage

8ht4B / Q59282 Crystal structure of acetylornithine aminotransferase complex with plp from corynebacterium glutamicum (see paper)
44% identity, 95% coverage

cg1583 acetylornithine aminotransferase from Corynebacterium glutamicum ATCC 13032
NCgl1343 acetylornithine transaminase from Corynebacterium glutamicum ATCC 13032
44% identity, 95% coverage

Deide_16910 putative bifunctional protein: acetylornithine transaminase/acetyl-lysine aminotransferase from Deinococcus deserti VCD115
41% identity, 91% coverage

Cj0227 acetylornithine aminotransferase from Campylobacter jejuni subsp. jejuni NCTC 11168
38% identity, 95% coverage

PAAG_06217 acetylornithine aminotransferase from Paracoccidioides lutzii Pb01
39% identity, 78% coverage

3nx3A / Q9PIR7 Crystal structure of acetylornithine aminotransferase (argd) from campylobacter jejuni
38% identity, 97% coverage

CJJ81176_0252 acetylornithine aminotransferase from Campylobacter jejuni subsp. jejuni 81-176
38% identity, 96% coverage

ECH_0886 acetylornithine/succinyldiaminopimelate aminotransferase from Ehrlichia chaffeensis str. Arkansas
ECH_RS03645 aspartate aminotransferase family protein from Ehrlichia chaffeensis str. Arkansas
39% identity, 97% coverage

SXYL_00238 ornithine--oxo-acid transaminase from Staphylococcus xylosus
38% identity, 94% coverage

PODANS_3_9430 uncharacterized protein from Podospora anserina S mat+
40% identity, 82% coverage

ASTC_SALTY / Q8ZPV2 Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
STM14_1582 aspartate aminotransferase family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
STM1303 succinylornithine transaminase, also has acetylornitine transaminase activity from Salmonella typhimurium LT2
42% identity, 89% coverage

t1182 succinylornithine transaminase from Salmonella enterica subsp. enterica serovar Typhi Ty2
42% identity, 89% coverage

WPa_0783 aspartate aminotransferase family protein from Wolbachia endosymbiont of Culex quinquefasciatus Pel
36% identity, 97% coverage

arg1 / RF|NP_588255.1 acetylornithine aminotransferase; EC 2.6.1.11 from Schizosaccharomyces pombe (see paper)
O74548 Probable acetylornithine aminotransferase, mitochondrial from Schizosaccharomyces pombe (strain 972 / ATCC 24843)
SPCC777.09c acetylornithine aminotransferase from Schizosaccharomyces pombe
38% identity, 86% coverage

MAP_RS06930 acetylornithine transaminase from Mycobacterium avium subsp. paratuberculosis K-10
43% identity, 91% coverage

PMT9312_1397 acetylornithine and succinylornithine aminotransferases from Prochlorococcus marinus str. MIT 9312
40% identity, 90% coverage

glr3849 4-aminobutyrate aminotransferase from Gloeobacter violaceus PCC 7421
37% identity, 85% coverage

BCG_1694 putative Acetylornithine aminotransferase argD from Mycobacterium bovis BCG str. Pasteur 1173P2
NP_216171 acetylornithine aminotransferase from Mycobacterium tuberculosis H37Rv
Rv1655 acetylornithine aminotransferase from Mycobacterium tuberculosis H37Rv
43% identity, 93% coverage

SLUN_RS38465 acetylornithine transaminase from Streptomyces lunaelactis
44% identity, 90% coverage

7nn4A / P9WPZ7 Crystal structure of mycobacterium tuberculosis argd with prosthetic group pyridoxal 5'-phosphate and 3-hydroxy-2-naphthoic acid.
43% identity, 95% coverage

DR0794, DR_0794 acetylornithine aminotransferase from Deinococcus radiodurans R1
39% identity, 80% coverage

SA0818 ornithine--oxo-acid transaminase from Staphylococcus aureus subsp. aureus N315
Q6GAW9 Ornithine aminotransferase 2 from Staphylococcus aureus (strain MSSA476)
SAV0957 ornithine--oxo-acid transaminase from Staphylococcus aureus subsp. aureus Mu50
SAOUHSC_00894 ornithine aminotransferase, putative from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_0860 Ornithine aminotransferase from Staphylococcus aureus subsp. aureus USA300_FPR3757
SACOL0960 ornithine aminotransferase from Staphylococcus aureus subsp. aureus COL
CH51_RS04860 ornithine--oxo-acid transaminase from Staphylococcus aureus
37% identity, 94% coverage

HVO_0043 acetylornithine aminotransferase from Haloferax volcanii DS2
40% identity, 95% coverage

A0A0E1X760 Ornithine aminotransferase from Staphylococcus aureus subsp. aureus MN8
37% identity, 92% coverage

DA471_RS02540 ornithine--oxo-acid transaminase from Staphylococcus aureus
37% identity, 94% coverage

PAS_chr4_0645 Acetylornithine aminotransferase from Komagataella phaffii GS115
38% identity, 87% coverage

NJ7G_0260 aspartate aminotransferase family protein from Natrinema sp. J7-2
41% identity, 93% coverage

LIMLP_08770 aspartate aminotransferase family protein from Leptospira interrogans serovar Manilae
39% identity, 93% coverage

SERP0545 ornithine aminotransferase from Staphylococcus epidermidis RP62A
37% identity, 94% coverage

Ava_0214 Aminotransferase class-III from Anabaena variabilis ATCC 29413
38% identity, 86% coverage

Deima_2454 aspartate aminotransferase family protein from Deinococcus maricopensis DSM 21211
38% identity, 90% coverage

PF1685 acetylornithine aminotransferase from Pyrococcus furiosus DSM 3638
38% identity, 96% coverage

SXYL_01965 ornithine--oxo-acid transaminase from Staphylococcus xylosus
36% identity, 94% coverage

alr2398 4-aminobutyrate aminotransferase from Nostoc sp. PCC 7120
37% identity, 86% coverage

PAB2440 acetylornithine aminotransferase from Pyrococcus abyssi GE5
38% identity, 95% coverage

OAT_BACSU / P38021 Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis (strain 168) (see 2 papers)
BSU40340 ornithine--oxo-acid transaminase from Bacillus subtilis subsp. subtilis str. 168
37% identity, 93% coverage

UH47_09195 ornithine--oxo-acid transaminase from Staphylococcus pseudintermedius
38% identity, 93% coverage

BT3758 N-succinylornithine aminotransferase (EC 2.6.1.81) from Bacteroides thetaiotaomicron VPI-5482
BT3758 acetylornithine aminotransferase from Bacteroides thetaiotaomicron VPI-5482
40% identity, 97% coverage

AM326 acetylornithine aminotransferase from Anaplasma marginale str. St. Maries
39% identity, 96% coverage

PH1716 acetylornithine aminotransferase from Pyrococcus horikoshii OT3
37% identity, 96% coverage

DRA0029, DR_A0029 4-aminobutyrate aminotransferase from Deinococcus radiodurans R1
39% identity, 80% coverage

Igni_0944 N2-acetyl-L-lysine aminotransferase from Ignicoccus hospitalis KIN4/I
37% identity, 97% coverage

ARG8 / P18544 acetylornithine transaminase (EC 2.6.1.11) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 9 papers)
ARGD_YEAST / P18544 Acetylornithine aminotransferase, mitochondrial; ACOAT; EC 2.6.1.11 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
YOL140W Acetylornithine aminotransferase, catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine from Saccharomyces cerevisiae
37% identity, 88% coverage

Cabys_3334 ornithine--oxo-acid transaminase from Caldithrix abyssi DSM 13497
40% identity, 93% coverage

BL1061 acetylornithine aminotransferase from Bifidobacterium longum NCC2705
39% identity, 83% coverage

SCO1577 acetylornithine aminotransferase from Streptomyces coelicolor A3(2)
42% identity, 94% coverage

bll2855 ornithine aminotransferase from Bradyrhizobium japonicum USDA 110
37% identity, 92% coverage

BB341_RS23960, SCLAV_0798 acetylornithine transaminase from Streptomyces clavuligerus
41% identity, 93% coverage

Deide_09040 putative 4-aminobutyrate aminotransferase, aminotransferase class-III from Deinococcus deserti VCD115
37% identity, 82% coverage

Echvi_3848 N-succinylornithine aminotransferase (EC 2.6.1.81) from Echinicola vietnamensis KMM 6221, DSM 17526
42% identity, 97% coverage

BBIF_1100 acetylornithine transaminase from Bifidobacterium bifidum S17
41% identity, 84% coverage

5eqcA / S8EY38 Structure of the ornithine aminotransferase from toxoplasma gondii crystallized in presence of oxidized glutathione reveals partial occupancy of plp at the protein active site
35% identity, 87% coverage

S8EY38 ornithine aminotransferase (EC 2.6.1.13) from Toxoplasma gondii (see paper)
TGME49_069110, TGME49_269110, XP_002365604 ornithine aminotransferase, mitochondrial precursor, putative from Toxoplasma gondii ME49
35% identity, 84% coverage

Dgeo_0989 aminotransferase class-III from Deinococcus geothermalis DSM 11300
39% identity, 83% coverage

TTC0553 No description from Thermus thermophilus HB27
39% identity, 89% coverage

Rru_A3466 Ornithine aminotransferase from Rhodospirillum rubrum ATCC 11170
36% identity, 89% coverage

T643_RS11485 4-aminobutyrate--2-oxoglutarate transaminase from Klebsiella pneumoniae MRSN 1319
39% identity, 86% coverage

SPISAL_02400 aspartate aminotransferase family protein from Spiribacter salinus M19-40
35% identity, 87% coverage

CAC0368 4 animobutyrate aminotransferase from Clostridium acetobutylicum ATCC 824
36% identity, 83% coverage

J7QVE2 ornithine aminotransferase from Methylocystis sp. (strain SC2)
35% identity, 86% coverage

SCO1223 ornithine aminotransferase from Streptomyces coelicolor A3(2)
37% identity, 91% coverage

PA14_03450 4-aminobutyrate aminotransferase from Pseudomonas aeruginosa UCBPP-PA14
37% identity, 84% coverage

davT / Q9I6M4 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
DAVT_PSEAE / Q9I6M4 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q9I6M4 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa (see paper)
PA0266 4-aminobutyrate aminotransferase from Pseudomonas aeruginosa PAO1
37% identity, 84% coverage

BC0355 4-aminobutyrate aminotransferase from Bacillus cereus ATCC 14579
35% identity, 79% coverage

STM2792 4-aminobutyrate aminotransferase from Salmonella typhimurium LT2
STM14_3368 4-aminobutyrate--2-oxoglutarate transaminase from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
36% identity, 84% coverage

PH1501 aminotransferase from Pyrococcus horikoshii OT3
34% identity, 86% coverage

HD73_0366 4-aminobutyrate--2-oxoglutarate transaminase from Bacillus thuringiensis serovar kurstaki str. HD73
35% identity, 83% coverage

t2687 4-aminobutyrate aminotransferase from Salmonella enterica subsp. enterica serovar Typhi Ty2
35% identity, 84% coverage

A0A3B6MXE9 ornithine aminotransferase (EC 2.6.1.13) from Triticum aestivum (see paper)
37% identity, 79% coverage

ESA_01203 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
36% identity, 81% coverage

FUT48_13600 4-aminobutyrate--2-oxoglutarate transaminase from Pseudomonas sp. JG-B
36% identity, 84% coverage

GabT / b2662 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli K-12 substr. MG1655 (see 29 papers)
gabT / P22256 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli (strain K12) (see 28 papers)
GABT_ECOLI / P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12) (see 6 papers)
NP_417148 4-aminobutyrate aminotransferase GabT from Escherichia coli str. K-12 substr. MG1655
b2662 4-aminobutyrate aminotransferase from Escherichia coli str. K-12 substr. MG1655
36% identity, 85% coverage

1sf2A / P22256 Structure of e. Coli gamma-aminobutyrate aminotransferase (see paper)
36% identity, 85% coverage

A1S_3281 4-aminobutyrate aminotransferase PLP-dependent from Acinetobacter baumannii ATCC 17978
39% identity, 87% coverage

K4A9B8 Ornithine aminotransferase from Setaria italica
37% identity, 78% coverage

hpnO / B3QHB5 aminobacteriohopanetriol synthase from Rhodopseudomonas palustris (strain TIE-1) (see paper)
37% identity, 77% coverage

PHATRDRAFT_27726 ornithine aminotransferase from Phaeodactylum tricornutum CCAP 1055/1
35% identity, 81% coverage

A0A3B6LSQ4 ornithine aminotransferase (EC 2.6.1.13) from Triticum aestivum (see paper)
37% identity, 79% coverage

8r2pD / P38507,P42588 Yzwideal x16 a scaffold for cryo-em of small proteins of interest crystallizing in space group 19 (p 21 21 21)
35% identity, 74% coverage

PatA / b3073 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
patA / P42588 putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli (strain K12) (see 15 papers)
PAT_ECOLI / P42588 Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli (strain K12) (see 8 papers)
P42588 putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli (see 4 papers)
b3073 putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent from Escherichia coli str. K-12 substr. MG1655
NP_417544 putrescine aminotransferase from Escherichia coli str. K-12 substr. MG1655
ETEC_3343 putrescine aminotransferase from Escherichia coli ETEC H10407
35% identity, 83% coverage

B1A0U3 ornithine aminotransferase (EC 2.6.1.13) from Pisum sativum (see 2 papers)
36% identity, 79% coverage

ECs3955 putrescine--2-oxoglutarate aminotransferase from Escherichia coli O157:H7 str. Sakai
35% identity, 81% coverage

A0A3B6KM96 ornithine aminotransferase (EC 2.6.1.13) from Triticum aestivum (see paper)
37% identity, 79% coverage

Sant_1573 putrescine aminotransferase from Sodalis praecaptivus
37% identity, 82% coverage

WP_000069444 4-aminobutyrate--2-oxoglutarate transaminase from Shigella dysenteriae
35% identity, 85% coverage

ACICU_03477 4-aminobutyrate--2-oxoglutarate transaminase from Acinetobacter baumannii ACICU
YP_001848133 4-aminobutyrate aminotransferase from Acinetobacter baumannii ACICU
39% identity, 82% coverage

EX895_002715 hypothetical protein from Sporisorium graminicola
34% identity, 54% coverage

PY17X_0109000 ornithine aminotransferase, putative from Plasmodium yoelii
34% identity, 88% coverage

XP_006280404 ornithine aminotransferase, mitochondrial from Capsella rubella
35% identity, 78% coverage

blr3010 blr3010 from Bradyrhizobium japonicum USDA 110
37% identity, 77% coverage

GoaG / b1302 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli K-12 substr. MG1655 (see 12 papers)
puuE / P50457 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli (strain K12) (see 11 papers)
PUUE_ECOLI / P50457 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli (strain K12) (see 2 papers)
puuE / BAD88710.1 gamma-aminobutyrate aminotransferase from Escherichia coli K-12 (see paper)
NP_415818 4-aminobutyrate aminotransferase PuuE from Escherichia coli str. K-12 substr. MG1655
b1302 GABA aminotransferase, PLP-dependent from Escherichia coli str. K-12 substr. MG1655
36% identity, 86% coverage

B8ANL7 Ornithine aminotransferase from Oryza sativa subsp. indica
36% identity, 80% coverage

OAT_PLAF7 / Q6LFH8 Ornithine aminotransferase; PfOAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum (isolate 3D7) (see 2 papers)
Q6LFH8 ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum (see 2 papers)
PF3D7_0608800, XP_966078 ornithine aminotransferase from Plasmodium falciparum 3D7
34% identity, 88% coverage

Q89LG2 Acetylornithine aminotransferase 2 from Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
blr4582 acetylornithine aminotransferase from Bradyrhizobium japonicum USDA 110
39% identity, 95% coverage

ABZJ_03667 4-aminobutyrate--2-oxoglutarate transaminase from Acinetobacter baumannii MDR-ZJ06
39% identity, 82% coverage

ECs3523 4-aminobutyrate aminotransferase activity from Escherichia coli O157:H7 str. Sakai
35% identity, 85% coverage

OAT_ORYSJ / Q10G56 Ornithine aminotransferase, mitochondrial; Ornithine delta-aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Oryza sativa subsp. japonica (Rice) (see paper)
36% identity, 79% coverage

XP_007214014 ornithine aminotransferase, mitochondrial from Prunus persica
36% identity, 79% coverage

XP_010494787 ornithine aminotransferase, mitochondrial from Camelina sativa
34% identity, 78% coverage

PP0372, PP_0372 acetylornithine aminotransferase, putative from Pseudomonas putida KT2440
39% identity, 90% coverage

NP_001306851 ornithine aminotransferase, mitochondrial from Jatropha curcas
36% identity, 78% coverage

Z3960 4-aminobutyrate aminotransferase activity from Escherichia coli O157:H7 EDL933
35% identity, 85% coverage

Z2486 4-aminobutyrate aminotransferase from Escherichia coli O157:H7 EDL933
36% identity, 86% coverage

argD / CAB82482.1 acetylornithine aminotransferase from Streptomyces clavuligerus (see 3 papers)
40% identity, 94% coverage

XP_011007419 ornithine aminotransferase, mitochondrial from Populus euphratica
35% identity, 78% coverage

A0A674DA32 ornithine aminotransferase (EC 2.6.1.13) from Salmo trutta (see paper)
36% identity, 73% coverage

XP_025460070 ornithine aminotransferase from Aspergillus niger CBS 101883
34% identity, 86% coverage

PBANKA_010740, PBANKA_0107400 ornithine aminotransferase, putative from Plasmodium berghei ANKA
34% identity, 88% coverage

RLV_7110 4-aminobutyrate--2-oxoglutarate transaminase from Rhizobium leguminosarum bv. viciae
38% identity, 85% coverage

ArtHe_01125 aspartate aminotransferase family protein from Arthrobacter sp. Helios
37% identity, 79% coverage

Q2Z0F8 ornithine aminotransferase (EC 2.6.1.13) from Agaricus bisporus (see paper)
34% identity, 79% coverage

XP_006398303 ornithine aminotransferase, mitochondrial from Eutrema salsugineum
34% identity, 74% coverage

KPHS_46340 putrescine aminotransferase from Klebsiella pneumoniae subsp. pneumoniae HS11286
36% identity, 80% coverage

OAT_EMENI / Q92413 Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see paper)
otaA ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans (see paper)
35% identity, 81% coverage

Q8GUA8 Ornithine aminotransferase from Medicago truncatula
36% identity, 79% coverage

KR75_05020 putrescine aminotransferase from Klebsiella variicola
36% identity, 80% coverage

VP1771 4-aminobutyrate aminotransferase from Vibrio parahaemolyticus RIMD 2210633
34% identity, 89% coverage

RL0102 putative 4-aminobutyrate aminotransferase from Rhizobium leguminosarum bv. viciae 3841
38% identity, 85% coverage

XP_015085834 ornithine aminotransferase, mitochondrial isoform X2 from Solanum pennellii
36% identity, 79% coverage

RSc0029 PROBABLE 4-AMINOBUTYRATE AMINOTRANSFERASE PROTEIN from Ralstonia solanacearum GMI1000
37% identity, 84% coverage

VpaChn25_1376 4-aminobutyrate--2-oxoglutarate transaminase from Vibrio parahaemolyticus
34% identity, 89% coverage

A0A5B8KQ12 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Agrobacterium tumefaciens (see paper)
37% identity, 85% coverage

WP_042715413 putrescine aminotransferase from Enterobacter mori
36% identity, 80% coverage

An04g04130 uncharacterized protein from Aspergillus niger
33% identity, 81% coverage

Echvi_0577 Ornithine aminotransferase (EC 2.6.1.13) from Echinicola vietnamensis KMM 6221, DSM 17526
34% identity, 90% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory