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PaperBLAST

PaperBLAST Hits for SwissProt::E0SCY1 Glycine betaine/choline transport system ATP-binding protein OusV (Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))) (400 a.a., MAIKLEVTHL...)

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Found 250 similar proteins in the literature:

OUSV_DICD3 / E0SCY1 Glycine betaine/choline transport system ATP-binding protein OusV from Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)) (see paper)
100% identity, 100% coverage

PROV_SALTY / P17328 Glycine betaine/proline betaine transport system ATP-binding protein ProV from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
STM2809 ABC superfamily (atp_bind), glycine/betaine/proline transport protein from Salmonella typhimurium LT2
SEN2654 glycine betaine/l-proline transport ATP-binding protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
79% identity, 100% coverage

ProU / b2677 glycine betaine ABC transporter ATP binding subunit ProV (EC 7.6.2.9) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
proV / P14175 glycine betaine ABC transporter ATP binding subunit ProV (EC 7.6.2.9) from Escherichia coli (strain K12) (see 6 papers)
PROV_ECOLI / P14175 Glycine betaine/proline betaine transport system ATP-binding protein ProV from Escherichia coli (strain K12) (see 4 papers)
TC 3.A.1.12.1 / P14175 ProV aka B2677, component of Glycine betaine/proline porter, ProU or ProVWX (also transports proline betaine, carnitine, dimethyl proline, homobetaine, γ-butyrobetaine and choline with low affinity) from Escherichia coli (see 6 papers)
proV / GB|AAC75724.1 glycine betaine/l-proline transport atp-binding protein prov from Escherichia coli K12 (see 6 papers)
EcolC_1029 glycine betaine/L-proline ABC transporter, ATPase subunit from Escherichia coli C str. ATCC 8739
A0A140N655 Quaternary amine transport ATP-binding protein from Escherichia coli (strain B / BL21-DE3)
NP_417163 glycine betaine ABC transporter ATP binding subunit ProV from Escherichia coli str. K-12 substr. MG1655
b2677 glycine betaine transporter subunit from Escherichia coli str. K-12 substr. MG1655
B21_RS13195 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Escherichia coli BL21(DE3)
79% identity, 100% coverage

c3230 Glycine betaine/L-proline transport ATP-binding protein proV from Escherichia coli CFT073
79% identity, 100% coverage

Z_RS18625 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Escherichia coli O157:H7 str. EDL933
ECs3540 ATP-binding component of glycine betaine / proline transport system from Escherichia coli O157:H7 str. Sakai
78% identity, 100% coverage

GM298_06810 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Enterobacter sp. HSTU-ASh6
78% identity, 99% coverage

KPN_03008 ATP-binding component of transport system for glycine, betaine and proline from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
79% identity, 99% coverage

A0A077T7Z1 ABC-type quaternary amine transporter (subunit 1/3) (EC 7.6.2.9) from Vibrio anguillarum serotype O1 (see paper)
67% identity, 99% coverage

WU75_16165 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Vibrio parahaemolyticus
64% identity, 98% coverage

BAU10_06505 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Vibrio alginolyticus
64% identity, 98% coverage

VP1726 ABC superfamily (glycine/betaine/proline transport protein) from Vibrio parahaemolyticus RIMD 2210633
64% identity, 98% coverage

VpaChn25_1714 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Vibrio parahaemolyticus
64% identity, 98% coverage

VF_0787 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Aliivibrio fischeri ES114
VF_0787 glycine betaine transporter subunit from Vibrio fischeri ES114
63% identity, 98% coverage

SPISAL_06410 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Spiribacter salinus M19-40
58% identity, 98% coverage

WP_011813050 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Halorhodospira halophila
57% identity, 98% coverage

pRL100079 putative glycine betaine/L-proline transport ATP-binding protein from Rhizobium leguminosarum bv. viciae 3841
56% identity, 96% coverage

BMEII0548 GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV from Brucella melitensis 16M
54% identity, 98% coverage

BOV_A0692 glycine betaine/L-proline ABC transporter, ATP-binding protein from Brucella ovis ATCC 25840
BME_RS12870 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Brucella melitensis bv. 1 str. 16M
54% identity, 98% coverage

BCAN_B0748 glycine betaine/L-proline transport ATP binding subunit from Brucella canis ATCC 23365
54% identity, 98% coverage

BRA0740 glycine betaine/L-proline ABC transporter, ATP-binding protein from Brucella suis 1330
54% identity, 98% coverage

BAB2_0500 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase:Glycine betaine/L-proline transport ATP-binding subunit from Brucella melitensis biovar Abortus 2308
BAbS19_II04710 ATP/GTP-binding site motif A (P-loop) from Brucella abortus S19
54% identity, 96% coverage

TC 3.A.1.12.9 / Q8U4S5 OtaA, component of The salt-induced glycine betaine OtaABC transporter from Methanosarcina mazei (see 2 papers)
51% identity, 86% coverage

TVD_RS10560 glycine betaine/L-proline ABC transporter ATP-binding protein ProV from Thioalkalivibrio versutus
54% identity, 97% coverage

BC2791 Glycine betaine transport ATP-binding protein from Bacillus cereus ATCC 14579
50% identity, 97% coverage

OPUAA_BACSU / P46920 Glycine betaine transport ATP-binding protein OpuAA; Quaternary-amine-transporting ATPase; EC 7.6.2.9 from Bacillus subtilis (strain 168) (see 2 papers)
P46920 ABC-type quaternary amine transporter (EC 7.6.2.9) from Bacillus subtilis (see paper)
TC 3.A.1.12.2 / P46920 OPAA aka OpuAA, component of Glycine betaine OpuAA/AB/AC porter (also transports dimethylsulfonioacetate and dimethylsulfoniopropionate) from Bacillus subtilis (see 4 papers)
52% identity, 93% coverage

A21D_02672 glycine betaine/L-proline ABC transporter ATP-binding protein from Virgibacillus dokdonensis
50% identity, 100% coverage

Hore_21510 glycine betaine/L-proline ABC transporter, ATPase subunit from Halothermothrix orenii H 168
52% identity, 97% coverage

PAMH27_5169 glycine betaine/L-proline ABC transporter ATP-binding protein from Pseudomonas aeruginosa MH27
52% identity, 98% coverage

Q9KIF7 Glycine betaine transport ATP-binding protein OpuAA from Lactococcus lactis subsp. lactis (strain IL1403)
50% identity, 96% coverage

DVU2299 glycine/betaine/L-proline ABC transporter, ATP binding protein from Desulfovibrio vulgaris Hildenborough
52% identity, 97% coverage

TC 3.A.1.12.5 / Q9RQ06 BusAA, component of Uptake system for glycine-betaine (high affinity) and proline (low affinity) (OpuAA-OpuABC) or BusAA-ABC of Lactococcus lactis). BusAA, the ATPase subunit, has a C-terminal tandem cystathionine β-synthase (CBS) domain which is the cytoplasmic K+ sensor for osmotic stress (osmotic strength)while the BusABC subunit has the membrane and receptor domains fused to each other (Biemans-Oldehinkel et al., 2006; Mahmood et al., 2006; Gul et al. 2012). An N-terminal amphipathic α-helix of OpuA is necessary for high activity but is not critical for biogenesis or the ionic regulation of transport from Lactococcus lactis (see paper)
llmg_1048 glycine betaine/proline ABC transporter from Lactococcus lactis subsp. cremoris MG1363
50% identity, 96% coverage

SPSF3K_00166 glycine betaine/L-proline ABC transporter ATP-binding protein from Streptococcus parauberis
50% identity, 94% coverage

SRX10_000873 glycine betaine/L-proline ABC transporter ATP-binding protein from Lacticaseibacillus paracasei
52% identity, 96% coverage

Bcep1808_3472 glycine betaine/L-proline ABC transporter, ATPase subunit from Burkholderia vietnamiensis G4
49% identity, 98% coverage

SSA_0386 Glycine-betaine ABC transporter, ATPase component, putative from Streptococcus sanguinis SK36
49% identity, 97% coverage

M5005_Spy_0157 glycine betaine transport ATP-binding protein from Streptococcus pyogenes MGAS5005
SPy0183 putative glycine betaine/proline ABC transporter (ATP-binding protein) from Streptococcus pyogenes M1 GAS
SpyM3_0143 putative glycine betaine/proline ABC transporter from Streptococcus pyogenes MGAS315
50% identity, 98% coverage

LRHM_RS10305 glycine betaine/L-proline ABC transporter ATP-binding protein from Lacticaseibacillus rhamnosus GG
51% identity, 96% coverage

EF2641 glycine betaine/L-proline ABC transporter, ATP-binding subunit from Enterococcus faecalis V583
50% identity, 99% coverage

7aheC / Q9KIF7 Opua inhibited inward facing (see paper)
49% identity, 98% coverage

BTH_II0966 glycine betaine/L-proline ABC transporter, ATP-binding protein from Burkholderia thailandensis E264
48% identity, 68% coverage

LSA1696 Putative glycine/betaine/carnitine ABC transporter, ATP-binding subunit from Lactobacillus sakei subsp. sakei 23K
49% identity, 98% coverage

Dde_0673 ATP-binding component of transport system for glycine, betaine and proline from Desulfovibrio desulfuricans G20
50% identity, 97% coverage

PSPTO_3060 glycine betaine/L-proline ABC transporter, ATP-binding protein from Pseudomonas syringae pv. tomato str. DC3000
62% identity, 69% coverage

WP_009292952 glycine betaine/L-proline ABC transporter ATP-binding protein from Bacteroides fragilis
48% identity, 93% coverage

GBUA_LISM4 / Q9RR46 Glycine betaine/carnitine transport ATP-binding protein GbuA; EC 7.6.2.9 from Listeria monocytogenes serotype 1/2a (strain 10403S) (see 4 papers)
lmo1014 highly similar to glycine betaine ABC transporter (ATP-binding protein) from Listeria monocytogenes EGD-e
LMON_1024 glycine betaine/L-proline ABC transporter ATP-binding protein from Listeria monocytogenes EGD
48% identity, 97% coverage

BP2057 putative ABC-transporter ATP-binding protein from Bordetella pertussis Tohama I
48% identity, 91% coverage

ArtHe_04675 glycine betaine/L-proline ABC transporter ATP-binding protein from Arthrobacter sp. Helios
47% identity, 90% coverage

Ddes_0824 glycine betaine/L-proline ABC transporter, ATPase subunit from Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
46% identity, 97% coverage

HQ775_RS10910, HQ843_RS19795 glycine betaine/L-proline ABC transporter ATP-binding protein from Martelella sp. NC18
46% identity, 96% coverage

D7DRC5 Glycine betaine/L-proline ABC transporter, ATPase subunit from Methanococcus voltae (strain ATCC BAA-1334 / A3)
43% identity, 95% coverage

PA5094 probable ATP-binding component of ABC transporter from Pseudomonas aeruginosa PAO1
61% identity, 65% coverage

PA14_67270 putative ATP-binding component of ABC transporter from Pseudomonas aeruginosa UCBPP-PA14
61% identity, 65% coverage

AO356_09610 ABC transporter for L-Histidine, ATPase component from Pseudomonas fluorescens FW300-N2C3
61% identity, 65% coverage

PSPTO_5273 histidine ABC transporter, ATP-binding protein, putative from Pseudomonas syringae pv. tomato str. DC3000
61% identity, 65% coverage

A0J47_RS18910 glycine betaine/L-proline ABC transporter ATP-binding protein from Photobacterium damselae subsp. damselae
44% identity, 93% coverage

SCO1621 glycine betaine transport ATP-binding protein from Streptomyces coelicolor A3(2)
56% identity, 70% coverage

PBPRB1788 putative glycine betaine ABC transporter ATP-binding protein from Photobacterium profundum SS9
42% identity, 93% coverage

TC 3.A.1.12.6 / Q9KKE1 HutV aka HISV aka R02702 aka SMC00670, component of Uptake system for hisitidine, proline, proline-betaine and glycine-betaine from Rhizobium meliloti (Sinorhizobium meliloti) (see 2 papers)
SMc00670 HISTIDINE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN from Sinorhizobium meliloti 1021
58% identity, 65% coverage

LMRG_02114 glycine betaine/L-proline ABC transporter, ATP-binding protein from Listeria monocytogenes 10403S
48% identity, 83% coverage

pRL120514 putative ATP-binding component of ABC transporter from Rhizobium leguminosarum bv. viciae 3841
46% identity, 83% coverage

NGR_c27420 glycine betaine/L-proline ABC transporter ATP-binding protein from Sinorhizobium fredii NGR234
NGR_c27420 putative glycine betaine/L-proline transport ATP binding subunit from Rhizobium sp. NGR234
57% identity, 65% coverage

AO353_07790 ABC transporter for Carnitine, ATPase component from Pseudomonas fluorescens FW300-N2E3
43% identity, 95% coverage

TC 3.A.1.12.12 / Q9HTI8 Probable ATP-binding component of ABC transporter, component of The CbcWV/CbcX (choline)/CaiX (carnitine)/BetX (betaine) transporter with 3 binding receptors for distinct quaternary ammonium compounds. Only the ligand-bound receptor binds to the transporter with high affinity from Pseudomonas aeruginosa (see paper)
PA5376 probable ATP-binding component of ABC transporter from Pseudomonas aeruginosa PAO1
PA14_71000 putative lycine betaine/L-proline ABC transporter, ATP-binding subunit from Pseudomonas aeruginosa UCBPP-PA14
52% identity, 68% coverage

Pf6N2E2_4681 ABC transporter for Carnitine, ATPase component from Pseudomonas fluorescens FW300-N2E2
53% identity, 67% coverage

AO356_13805 ABC transporter for Carnitine, ATPase component from Pseudomonas fluorescens FW300-N2C3
52% identity, 67% coverage

VIBHAR_06176 ATP-binding component of ABC transporter from Vibrio harveyi ATCC BAA-1116
42% identity, 97% coverage

PSPTO_0462 glycine/betaine/L-proline ABC transporter, ATP-binding subunit from Pseudomonas syringae pv. tomato str. DC3000
51% identity, 67% coverage

Psyr_4711 Glycine betaine/L-proline transport ATP-binding subunit from Pseudomonas syringae pv. syringae B728a
51% identity, 67% coverage

C7CH17 Quaternary amine transport ATP-binding protein from Methylorubrum extorquens (strain DSM 6343 / CIP 106787 / DM4)
44% identity, 88% coverage

PP_0294 Choline / carnitine / glycine betaine ABC transporter, ATPase component from Pseudomonas putida KT2440
PP0294, PP_0294 glycine betaine/L-proline ABC transporter, ATP-binding subunit from Pseudomonas putida KT2440
PPUBIRD1_0323 choline ABC transporter ATP-binding protein from Pseudomonas putida BIRD-1
43% identity, 95% coverage

VPA1109 putative ATP-binding component of ABC transporter from Vibrio parahaemolyticus RIMD 2210633
42% identity, 97% coverage

WU75_10380 choline ABC transporter ATP-binding protein from Vibrio parahaemolyticus
42% identity, 97% coverage

TC 3.A.1.12.13 / A9CI32 ABC transporter, nucleotide binding/ATPase protein (Proline/glycine betaine), component of High affinity (2mμM) choline uptake porter. The choline binding receptor exhibits a venus fly trap mechanism of substrate binding. (ChoX binds acetyl choline and betaine with low affinity (80μM and 470μM, respectively) (Aktas et al., 2011) (most similar to 3.A.1.12.7) from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (see 2 papers)
Atu2279 ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine) from Agrobacterium tumefaciens str. C58 (Cereon)
51% identity, 68% coverage

SYNW1915 ABC transporter superfamily for glycine betaine/proline, ATP binding from Synechococcus sp. WH 8102
52% identity, 70% coverage

TC 3.A.1.12.7 / Q92N35 ChoV, component of High affinity (3 μM) choline-specific uptake system from Rhizobium meliloti (Sinorhizobium meliloti) (see 2 papers)
SMc02739 PUTATIVE GLYCINE BETAINE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN from Sinorhizobium meliloti 1021
52% identity, 67% coverage

VVA0511 ABC-type proline/glycine betaine transport system, ATPase component from Vibrio vulnificus YJ016
54% identity, 63% coverage

OA04_25030 ATP-binding cassette domain-containing protein from Pectobacterium versatile
57% identity, 59% coverage

BAB1_1595 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase from Brucella melitensis biovar Abortus 2308
BMEI0439 GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV from Brucella melitensis 16M
52% identity, 67% coverage

BOV_1526 putative glycine betaine/L-proline ABC transporter, ATP-binding protein from Brucella ovis ATCC 25840
52% identity, 67% coverage

SMc04439 PUTATIVE GLYCINE BETAINE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN from Sinorhizobium meliloti 1021
55% identity, 57% coverage

BR1581 glycine betaine/L-proline ABC transporter, ATP-binding protein, putative from Brucella suis 1330
52% identity, 67% coverage

HQ843_RS05790 choline ABC transporter ATP-binding protein from Martelella sp. NC20
49% identity, 70% coverage

BB0146 glycine betaine, L-proline ABC transporter, ATP-binding protein (proV) from Borrelia burgdorferi B31
BB_0146 glycine betaine/L-proline ABC transporter ATP-binding protein from Borreliella burgdorferi B31
43% identity, 70% coverage

SPO2443 glycine betaine/L-proline ABC transporter ATP-binding protein from Ruegeria pomeroyi DSS-3
47% identity, 69% coverage

BCAN_A1616 ABC transporter related from Brucella canis ATCC 23365
45% identity, 81% coverage

HQ843_RS09775 choline ABC transporter ATP-binding protein from Martelella sp. NC20
50% identity, 72% coverage

SPO1549 glycine betaine/L-proline ABC transporter ATP-binding protein from Ruegeria pomeroyi DSS-3
50% identity, 68% coverage

TMOW_RUEPO / Q5LT65 Trimethylamine N-oxide transport system ATP-binding protein TmoW; TMAO transport system ATP-binding protein TmoW; EC 7.6.2.9 from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
50% identity, 68% coverage

IEX10_RS05410 glycine betaine/L-proline ABC transporter ATP-binding protein from Amylibacter cionae
40% identity, 81% coverage

TMOW_PELUB / Q4FL37 Trimethylamine N-oxide transport system ATP-binding protein TmoW; TMAO transport system ATP-binding protein TmoW; EC 7.6.2.9 from Pelagibacter ubique (strain HTCC1062) (see paper)
45% identity, 70% coverage

SPO1132 glycine betaine/L-proline ABC transporter ATP-binding protein from Ruegeria pomeroyi DSS-3
43% identity, 71% coverage

MED193_07698 glycine betaine/proline ABC transporter, ATP-binding protein from Roseobacter sp. MED193
42% identity, 74% coverage

CAC2850 Proline/glycine betaine ABC-type transport system, ATPase component from Clostridium acetobutylicum ATCC 824
34% identity, 91% coverage

Cbei_2871 glycine betaine/L-proline ABC transporter, ATPase subunit from Clostridium beijerincki NCIMB 8052
37% identity, 88% coverage

CBO1636 glycine betaine/carnitine/choline transport ATP-binding protein from Clostridium botulinum A str. ATCC 3502
35% identity, 96% coverage

CLIBASIA_01125 ATP-binding cassette domain-containing protein from Candidatus Liberibacter asiaticus str. psy62
44% identity, 67% coverage

CD0900 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Clostridium difficile 630
34% identity, 91% coverage

CPE0557 probable glycine betaine/carnitine/choline ABC transporter from Clostridium perfringens str. 13
36% identity, 87% coverage

SA2237 glycine betaine/carnitine/choline ABC transporter opuCA from Staphylococcus aureus subsp. aureus N315
SAV2448 glycine betaine/carnitine/choline ABC transporter from Staphylococcus aureus subsp. aureus Mu50
34% identity, 85% coverage

NWMN_2347 glycine betaine/L-proline transport ATP-binding subunit from Staphylococcus aureus subsp. aureus str. Newman
SACOL2453 amino acid ABC transporter, ATP-binding protein from Staphylococcus aureus subsp. aureus COL
34% identity, 86% coverage

B4602_RS12935 betaine/proline/choline family ABC transporter ATP-binding protein from Staphylococcus aureus
34% identity, 86% coverage

Theba_2466 ABC transporter ATP-binding protein from Mesotoga prima MesG1.Ag.4.2
37% identity, 86% coverage

SAUSA300_2393 glycine betaine/carnitine/choline ABC transporter ATP-binding protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
34% identity, 86% coverage

MW2372 glycine betaine/carnitine/choline ABC transporter opuCA from Staphylococcus aureus subsp. aureus MW2
34% identity, 85% coverage

OG1RF_10595 betaine/proline/choline family ABC transporter ATP-binding protein from Enterococcus faecalis OG1RF
EF0865 glycine betaine/carnitine/choline transporter, ATP-binding protein from Enterococcus faecalis V583
36% identity, 92% coverage

G5T25_09120 betaine/proline/choline family ABC transporter ATP-binding protein from Enterococcus faecalis
36% identity, 92% coverage

NPW32_RS04150 methionine ABC transporter ATP-binding protein from Staphylococcus epidermidis
46% identity, 56% coverage

OPUBA_BACSU / Q45460 Choline transport ATP-binding protein OpuBA from Bacillus subtilis (strain 168) (see 2 papers)
TC 3.A.1.12.3 / Q45460 OPBA aka OpuBA aka PROV, component of Choline porter from Bacillus subtilis (see 3 papers)
BSU33730 choline ABC transporter (ATP-binding protein) from Bacillus subtilis subsp. subtilis str. 168
36% identity, 87% coverage

CBU_0178 ABC transporter, ATP-binding protein from Coxiella burnetii RSA 493
45% identity, 58% coverage

A21D_01627 betaine/proline/choline family ABC transporter ATP-binding protein from Virgibacillus dokdonensis
35% identity, 89% coverage

lp_1607 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Lactobacillus plantarum WCFS1
35% identity, 88% coverage

lp_1607 betaine/proline/choline family ABC transporter ATP-binding protein from Lactiplantibacillus plantarum WCFS1
35% identity, 88% coverage

SERP0489 ABC transporter, ATP-binding protein from Staphylococcus epidermidis RP62A
45% identity, 56% coverage

NPW32_RS02740 betaine/proline/choline family ABC transporter ATP-binding protein from Staphylococcus epidermidis
36% identity, 87% coverage

OPUCA_BACSU / O34992 Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA from Bacillus subtilis (strain 168) (see 4 papers)
TC 3.A.1.12.4 / O34992 OPCA aka OpuCA, component of Uptake system for choline, L-carnitine, D-carnitine, glycine betaine, proline betaine, crotonobetaine, γ-butyrobetaine, dimethylsulfonioacetate, dimethylsulfoniopropionate, ectoine and choline-O-sulfate from Bacillus subtilis (see 2 papers)
BSU33830 glycine betaine/carnitine/choline/choline sulfate ABC transporter (ATP-binding protein) from Bacillus subtilis subsp. subtilis str. 168
35% identity, 87% coverage

LSA1870 Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunit from Lactobacillus sakei subsp. sakei 23K
46% identity, 55% coverage

USA300HOU_0847 ABC superfamily ATP binding cassette transporter, ABC protein from Staphylococcus aureus subsp. aureus USA300_TCH1516
Q2FZZ2 Methionine import ATP-binding protein MetN 2 from Staphylococcus aureus (strain NCTC 8325 / PS 47)
SAUSA300_0796 ABC transporter, ATP-binding protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
SACOL0882 ABC transporter, ATP-binding protein from Staphylococcus aureus subsp. aureus COL
45% identity, 56% coverage

GL331_01520 osmoprotectant ABC transporter ATP-binding protein OpuCA from Bacillus velezensis
35% identity, 87% coverage

SSP0451 ABC-type proline glycine betaine transport system ATPase component from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
DV527_RS02405 betaine/proline/choline family ABC transporter ATP-binding protein from Staphylococcus saprophyticus
36% identity, 87% coverage

GBAA2279 glycine betaine/L-proline ABC transporter, ATP-binding protein from Bacillus anthracis str. 'Ames Ancestor'
45% identity, 56% coverage

A9WPC5 Glycine betaine transport ATP-binding protein from Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
41% identity, 66% coverage

G8O30_05615 ABC transporter ATP-binding protein from Mangrovibacillus cuniculi
43% identity, 56% coverage

SAR0870 ABC transporter ATP-binding protein from Staphylococcus aureus subsp. aureus MRSA252
45% identity, 56% coverage

BMMGA3_01135 ABC transporter ATP-binding protein from Bacillus methanolicus MGA3
46% identity, 56% coverage

SA0769 hypothetical protein from Staphylococcus aureus subsp. aureus N315
45% identity, 56% coverage

DRA0137, DR_A0137 amino acid ABC transporter, ATP-binding protein from Deinococcus radiodurans R1
41% identity, 70% coverage

Atu0197 ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine) from Agrobacterium tumefaciens str. C58 (Cereon)
41% identity, 76% coverage

TC 3.A.1.12.11 / Q8Q041 Glycine betaine transporter, ATP-binding protein, component of The glycine betaine uptake porter, GbpABCD from Methanosarcina mazei (see paper)
35% identity, 90% coverage

BC2232 Glycine betaine transport ATP-binding protein from Bacillus cereus ATCC 14579
43% identity, 58% coverage

SERP2031 amino acid ABC transporter, ATP-binding protein from Staphylococcus epidermidis RP62A
34% identity, 84% coverage

PS417_27115 putrescine ABC transporter, ATPase component from Pseudomonas simiae WCS417
43% identity, 60% coverage

A21D_03468 ABC transporter ATP-binding protein from Virgibacillus dokdonensis
38% identity, 71% coverage

PP0868, PP_0868 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative from Pseudomonas putida KT2440
36% identity, 90% coverage

TC 3.A.1.12.8 / Q93A35 BilEA aka OpuBA protein, component of A proline/glycine betaine uptake system. Also reported to be a bile exclusion system that exports oxgall and other bile compounds, BilEA/EB or OpuBA/BB (required for normal virulence) from Listeria monocytogenes (see 2 papers)
NP_464946 glycine/betaine ABC transporter ATP-binding protein from Listeria monocytogenes EGD-e
lmo1421 similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) from Listeria monocytogenes EGD-e
36% identity, 88% coverage

PA0302 polyamine transport protein PotG from Pseudomonas aeruginosa PAO1
Q9I6I9 Spermidine/putrescine import ATP-binding protein PotA from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
37% identity, 75% coverage

AMK58_16560 ABC transporter ATP-binding protein from Azospirillum brasilense
47% identity, 57% coverage

W6QXK5 Spermidine/putrescine import ATP-binding protein PotA from Ectopseudomonas oleovorans (strain CECT 5344)
43% identity, 60% coverage

HVX45_RS02390 osmoprotectant ABC transporter ATP-binding protein OsmV from Escherichia fergusonii
31% identity, 93% coverage

ESA_01738 osmoprotectant ABC transporter ATP-binding protein OsmV from Cronobacter sakazakii ATCC BAA-894
32% identity, 93% coverage

FORC67_1458 betaine/proline/choline family ABC transporter ATP-binding protein from Listeria monocytogenes
33% identity, 87% coverage

lin1467 similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) from Listeria innocua Clip11262
33% identity, 87% coverage

LSA0616 Putative glycine/betaine/carnitine/choline ABC transporter, ATP-binding subunit from Lactobacillus sakei subsp. sakei 23K
34% identity, 88% coverage

OPUCA_LISM4 / G2JZ44 Carnitine transport ATP-binding protein OpuCA; EC 7.6.2.9 from Listeria monocytogenes serotype 1/2a (strain 10403S) (see 4 papers)
OPUCA_LISMN / Q9KHT9 Carnitine transport ATP-binding protein OpuCA; EC 7.6.2.9 from Listeria monocytogenes (see paper)
LMON_1491 betaine/proline/choline family ABC transporter ATP-binding protein from Listeria monocytogenes EGD
Q7AP65 Quaternary amine transport ATP-binding protein from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
lmo1428 similar to glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) from Listeria monocytogenes EGD-e
33% identity, 87% coverage

LMRG_00880 glycine betaine/L-proline ABC transporter, ATP-binding protein from Listeria monocytogenes 10403S
33% identity, 85% coverage

RHE_RS17470 ABC transporter ATP-binding protein from Rhizobium etli CFN 42
39% identity, 64% coverage

Sca_0455 ABC transporter ATP-binding protein from Staphylococcus carnosus subsp. carnosus TM300
SCA_0455 methionine ABC transporter ATP-binding protein from Staphylococcus carnosus subsp. carnosus TM300
44% identity, 56% coverage

PH0194 multiple sugar-binding transport ATP-binding protein from Pyrococcus horikoshii OT3
43% identity, 58% coverage

2d62A / O57933 Crystal structure of multiple sugar binding transport atp-binding protein
43% identity, 58% coverage

lp_0368 ABC transporter ATP-binding protein from Lactiplantibacillus plantarum WCFS1
lp_0368 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Lactobacillus plantarum WCFS1
42% identity, 60% coverage

SXYL_00488 betaine/proline/choline family ABC transporter ATP-binding protein from Staphylococcus xylosus
35% identity, 87% coverage

MSMEG_2926 glycine betaine/carnitine/choline transport ATP-binding protein opuCA from Mycobacterium smegmatis str. MC2 155
36% identity, 93% coverage

OSMV_SALTY / Q8ZPK4 Osmoprotectant import ATP-binding protein OsmV; EC 7.6.2.- from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
TC 3.A.1.12.14 / Q8ZPK4 ABC-type proline/glycine betaine transport system, component of OsmU (OsmVWXY) transporter for glycine betaine and choline-O-sulfate uptake. Induced by osmotic stress (0.3M NaCl) (Frossard et al., 2012). Also called OpuCA/CB1/CB2/CC from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
STM1491 ABC-type proline/glycine betaine transport systems, ATPase component from Salmonella typhimurium LT2
SL1344_RS07410 osmoprotectant ABC transporter ATP-binding protein OsmV from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
32% identity, 93% coverage

A0A142UTH4 ABC-type polyamine transporter (subunit 4/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
SSU0751 spermidine/putrescine ABC transporter ATP-binding protein from Streptococcus suis P1/7
42% identity, 58% coverage

SSP1997 putative ABC-type proline glycine betaine transport system ATPase component from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
42% identity, 58% coverage

SXYL_02128 ABC transporter ATP-binding protein from Staphylococcus xylosus
42% identity, 58% coverage

C289_0889 ABC transporter ATP-binding protein from Anoxybacillus ayderensis
43% identity, 54% coverage

SMc00771 PROBABLE PUTRESCINE TRANSPORT ATP-BINDING PROTEIN from Sinorhizobium meliloti 1021
39% identity, 70% coverage

BC1324 2-aminoethylphosphonate transport ATP-binding protein phnT from Bacillus cereus ATCC 14579
36% identity, 72% coverage

SSUSC84_1444 ABC-type glycine betaine transport system ATP-binding protein from Streptococcus suis SC84
43% identity, 56% coverage

U876_00745 polyamine ABC transporter ATP-binding protein from Aeromonas hydrophila NJ-35
42% identity, 60% coverage

WP_099424991 methionine ABC transporter ATP-binding protein from Solibacillus sp. R5-41
43% identity, 57% coverage

E2P69_RS06565 ABC transporter ATP-binding protein from Xanthomonas perforans
42% identity, 66% coverage

BPSL1739 putative ABC transport system, ATP-binding protein from Burkholderia pseudomallei K96243
45% identity, 56% coverage

K3G22_05085 polyamine ABC transporter ATP-binding protein from Shewanella putrefaciens
44% identity, 57% coverage

RSAU_000696 ABC transporter ATP-binding protein from Staphylococcus aureus subsp. aureus 6850
41% identity, 58% coverage

SAUSA300_0706 putative osmoprotectant ABC transporter, ATP-binding protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_0690 osmoprotectant ABC transporter, ATP-binding protein from Staphylococcus aureus subsp. aureus str. Newman
41% identity, 58% coverage

NE1870 potA; putative spermidine/putrescine transport system ATP-binding protein from Nitrosomonas europaea ATCC 19718
41% identity, 59% coverage

EF0674 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Enterococcus faecalis V583
40% identity, 59% coverage

BCAL1823 putrescine ABC transporter ATP-binding protein from Burkholderia cenocepacia J2315
38% identity, 61% coverage

BCAS0128 ABC transporter ATP-binding protein from Burkholderia cenocepacia J2315
35% identity, 86% coverage

BCE1437 ABC transporter, ATP-binding protein from Bacillus cereus ATCC 10987
33% identity, 79% coverage

SA0677 hypothetical protein from Staphylococcus aureus subsp. aureus N315
SAV0722 similar to choline transport ATP-binding protein from Staphylococcus aureus subsp. aureus Mu50
41% identity, 58% coverage

OG1RF_RS02205 ABC transporter ATP-binding protein from Enterococcus faecalis OG1RF
40% identity, 59% coverage

SO_1271 polyamine ABC transporter ATP-binding protein from Shewanella oneidensis MR-1
SO1271 broad range amino acid ABC transporter, ATP-binding protein from Shewanella oneidensis MR-1
43% identity, 57% coverage

SLUG_20840 ABC transporter ATP-binding protein from Staphylococcus lugdunensis N920143
42% identity, 58% coverage

SAR0775 ABC transporter ATP-binding protein from Staphylococcus aureus subsp. aureus MRSA252
42% identity, 56% coverage

Q3J3S3 Spermidine/putrescine import ATP-binding protein PotA from Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
42% identity, 65% coverage

SMa1466 Probable ABC transporter ATP binding protein from Sinorhizobium meliloti 1021
36% identity, 86% coverage

SACOL0781 osmoprotectant ABC transporter, ATP-binding protein, putative from Staphylococcus aureus subsp. aureus COL
41% identity, 58% coverage

gbs2088 unknown from Streptococcus agalactiae NEM316
SAK_2068 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Streptococcus agalactiae A909
41% identity, 58% coverage

Psyr_4249 Glycine betaine/L-proline transport ATP-binding subunit from Pseudomonas syringae pv. syringae B728a
36% identity, 90% coverage

Q87WH5 ABC-type quaternary amine transporter (EC 7.6.2.9) from Pseudomonas syringae (see paper)
TC 3.A.1.12.10 / Q87WH5 OpuCA aka PSPTO4575, component of The OpuC transporter selective for glycine betaine > choline, acetylcholine, carnitine and proline betaine (contains tandem cystathionine-β-synthase (CBS) domains in the ABC component of OpuC that are required for osmoregulatory function (Chen and Beattie, 2007)) from Pseudomonas syringae pv. tomato (see paper)
PSPTO_4575 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein from Pseudomonas syringae pv. tomato str. DC3000
36% identity, 90% coverage

RSP_2400 ABC putrescine transporter, ATPase subunit from Rhodobacter sphaeroides 2.4.1
46% identity, 55% coverage

KR75_16575 putrescine ABC transporter ATP-binding subunit PotG from Klebsiella variicola
43% identity, 57% coverage

PSPTO_2664 spermidine/putrescine ABC transporter, ATP-binding protein from Pseudomonas syringae pv. tomato str. DC3000
43% identity, 56% coverage

AH67_02675 ABC transporter ATP-binding protein from Bifidobacterium pseudolongum PV8-2
41% identity, 59% coverage

SMU_973 ABC transporter ATP-binding protein from Streptococcus mutans UA159
41% identity, 58% coverage

GALLO_1283 putative proline/glycine betaine ABC transporter ATP-binding protein from Streptococcus gallolyticus UCN34
43% identity, 55% coverage

TM1232 sugar ABC transporter, ATP-binding protein from Thermotoga maritima MSB8
43% identity, 54% coverage

1g291 / Q9YGA6 Malk (see paper)
41% identity, 58% coverage

TC 3.A.1.11.7 / Q97Q42 Spermidine/putrescine import ATP-binding protein PotA, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
41% identity, 58% coverage

MALK_THELN / Q9YGA6 Trehalose/maltose import ATP-binding protein MalK; EC 7.5.2.1 from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see 5 papers)
41% identity, 58% coverage

TC 3.A.1.1.16 / Q8TZQ3 MalK aka PF1933, component of Maltooligosaccharide porter (Maltose is not a substrate, but maltotriose is.) from Pyrococcus furiosus
PF1933 putative sugar transport ATP-hydrolyzing from Pyrococcus furiosus DSM 3638
41% identity, 58% coverage

TON_1791 ABC-type maltdextrin transport system, ATPase component from Thermococcus onnurineus NA1
41% identity, 58% coverage

PF1744 trehalose/maltose transport ATP-hydrolyzing from Pyrococcus furiosus DSM 3638
41% identity, 58% coverage

MYA_2751 ABC transporter ATP-binding protein from Burkholderia sp. KJ006
37% identity, 62% coverage

D7004_11055 ABC transporter ATP-binding protein from Pedobacter jejuensis
37% identity, 64% coverage

WP_003127477 ABC transporter ATP-binding protein from Enterococcus gallinarum
42% identity, 55% coverage

VK055_4957 ABC transporter ATP-binding protein from Klebsiella pneumoniae subsp. pneumoniae
44% identity, 56% coverage

Atu4786 ABC transporter, nucleotide binding/ATPase protein (iron) from Agrobacterium tumefaciens str. C58 (Cereon)
41% identity, 58% coverage

TK1775 ABC-type maltdextrin transport system, ATPase component from Thermococcus kodakaraensis KOD1
40% identity, 58% coverage

lmo0284 similar to ABC transporter (ATP-binding protein) from Listeria monocytogenes EGD-e
45% identity, 57% coverage

Rv2397c PROBABLE SULFATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER CYSA1 from Mycobacterium tuberculosis H37Rv
41% identity, 58% coverage

TC 3.A.1.6.3 / P0A4W2 Sulfate/thiosulfate import ATP-binding protein CysA aka RV2397C aka MT2468 aka MTCY253.24, component of Sulfate porter from Mycobacterium tuberculosis (see 3 papers)
MT2468 sulfate ABC transporter, ATP-binding protein from Mycobacterium tuberculosis CDC1551
41% identity, 58% coverage

Q8DRU8 Quaternary amine transport ATP-binding protein from Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
33% identity, 88% coverage

EF2652 spermidine/putrescine ABC transporter, ATP-binding subunit from Enterococcus faecalis V583
42% identity, 55% coverage

ABD05_RS05015 ABC transporter ATP-binding protein from Burkholderia pyrrocinia
36% identity, 62% coverage

RHE_RS10605 ABC transporter ATP-binding protein from Rhizobium etli CFN 42
40% identity, 60% coverage

YPTB1362 ABC type putrescine/spermidine transporter, ATP-binding protein potG from Yersinia pseudotuberculosis IP 32953
YPO1332 putrescine transport ATP-binding protein from Yersinia pestis CO92
NP_670149 ATP-binding component of putrescine ABC transport system from Yersinia pestis KIM
41% identity, 57% coverage

SEQ_1129 spermidine/putrescine ABC transporter ATP-binding protein from Streptococcus equi subsp. equi 4047
40% identity, 62% coverage

AT5A_10100 ABC transporter ATP-binding protein from Agrobacterium tumefaciens 5A
42% identity, 57% coverage

SERP0385 ABC transporter, ATP-binding protein from Staphylococcus epidermidis RP62A
37% identity, 70% coverage

lp_2352 amino acid ABC transporter, ATP-binding protein from Lactobacillus plantarum WCFS1
43% identity, 57% coverage

TON_0985 ABC-type iron(III) transport system, ATPase component from Thermococcus onnurineus NA1
41% identity, 58% coverage

SAG0244 amino acid ABC transporter, ATP-binding protein from Streptococcus agalactiae 2603V/R
SAK_0303 quaternary amine uptake (QAT) family ABC transporter, ATP-binding protein from Streptococcus agalactiae A909
33% identity, 88% coverage

Z1082 ATP-binding component of putrescine transport system from Escherichia coli O157:H7 EDL933
ECs0935 ATP-binding component of putrescine transport system from Escherichia coli O157:H7 str. Sakai
42% identity, 57% coverage

MSMEG_6521 sulfate/thiosulfate import ATP-binding protein CysA 2 from Mycobacterium smegmatis str. MC2 155
MSMEG_6521 ABC transporter ATP-binding protein from Mycolicibacterium smegmatis MC2 155
42% identity, 54% coverage

GBAA5222 ABC transporter, ATP-binding protein from Bacillus anthracis str. 'Ames Ancestor'
41% identity, 57% coverage

gbs0235 unknown from Streptococcus agalactiae NEM316
Q8E7C0 Quaternary amine transport ATP-binding protein from Streptococcus agalactiae serotype III (strain NEM316)
33% identity, 88% coverage

PotG / b0855 putrescine ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
PotG / P31134 putrescine ABC transporter ATP binding subunit (EC 7.6.2.11) from Escherichia coli (strain K12) (see 2 papers)
POTG_ECOLI / P31134 Putrescine transport ATP-binding protein PotG; EC 7.6.2.16 from Escherichia coli (strain K12) (see 2 papers)
TC 3.A.1.11.2 / P31134 PotG aka B0855, component of Putrescine porter from Escherichia coli (see 4 papers)
b0855 ATP-binding component of putrescine transport system from Escherichia coli str. K-12 substr. MG1655
42% identity, 57% coverage

CTN_1296 Sugar ABC transporter, ATP-binding protein from Thermotoga neapolitana DSM 4359
41% identity, 56% coverage

BMEI1727 GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV from Brucella melitensis 16M
44% identity, 51% coverage

CV4394 probable ABC transporter ATP-binding protein from Chromobacterium violaceum ATCC 12472
44% identity, 56% coverage

T1E_0341 ABC transporter ATP-binding protein from Pseudomonas putida DOT-T1E
39% identity, 63% coverage

SMDB11_RS03340 methionine ABC transporter ATP-binding protein from Serratia marcescens subsp. marcescens Db11
43% identity, 58% coverage

BPSS0466 putrescine ABC transport system, ATP-binding protein from Burkholderia pseudomallei K96243
38% identity, 61% coverage

SE0502 choline transport ATP-binding protein from Staphylococcus epidermidis ATCC 12228
37% identity, 70% coverage

SAK_1196 spermidine/putrescine ABC transporter, ATP-binding protein from Streptococcus agalactiae A909
SAG1111 spermidine/putrescine ABC transporter, ATP-binding protein from Streptococcus agalactiae 2603V/R
gbs1178 Unknown from Streptococcus agalactiae NEM316
40% identity, 58% coverage

LSEI_2628 ABC-type proline/glycine betaine transport system, ATPase component from Lactobacillus casei ATCC 334
41% identity, 56% coverage

PA3891 probable ATP-binding component of ABC transporter from Pseudomonas aeruginosa PAO1
36% identity, 86% coverage

Rv3758c POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PROV from Mycobacterium tuberculosis H37Rv
NP_218275 glycine betaine/carnitine/choline/L-proline ABC transporter ATP-binding protein ProV from Mycobacterium tuberculosis H37Rv
42% identity, 59% coverage

METN_BACSU / O32169 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Bacillus subtilis (strain 168) (see paper)
TC 3.A.1.24.2 / O32169 MetN (C) (aka YusC), component of The L- and D-methionine porter (also transports methionine sulfoxide from Bacillus subtilis subsp. subtilis str. 168 (see 2 papers)
BSU32750 methionine ABC transporter (ATP-binding protein) from Bacillus subtilis subsp. subtilis str. 168
42% identity, 58% coverage

VC1428 spermidine/putrescine ABC transporter, ATP-binding protein from Vibrio cholerae O1 biovar eltor str. N16961
37% identity, 60% coverage

STM0878 ABC superfamily (atp_bind), putrescine transporter from Salmonella typhimurium LT2
41% identity, 57% coverage

PA14_13580 putative ABC-type proline/glycine betaine transpor from Pseudomonas aeruginosa UCBPP-PA14
36% identity, 86% coverage

llmg_1700 choline ABC transporter ATP binding protein from Lactococcus lactis subsp. cremoris MG1363
42% identity, 55% coverage

SG0859 putrescine transport ATP-binding protein PotG from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
41% identity, 57% coverage

slr1455 sulfate transport system permease protein from Synechocystis sp. PCC 6803
P74548 Sulfate/thiosulfate import ATP-binding protein CysA from Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
40% identity, 60% coverage

BAB1_0224 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase from Brucella melitensis biovar Abortus 2308
BR0223 ABC transporter, ATP-binding protein from Brucella suis 1330
BOV_0214 ABC transporter, ATP-binding protein from Brucella ovis ATCC 25840
BCAN_A0226 ABC transporter related from Brucella canis ATCC 23365
44% identity, 57% coverage

TC 3.A.1.1.22 / Q9X103 MalK; aka Sugar ABC transporter, ATP-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins from Thermotoga maritima (see paper)
TM1276 sugar ABC transporter, ATP-binding protein from Thermotoga maritima MSB8
41% identity, 56% coverage

Gocc_1613 ABC transporter ATP-binding protein from Gaiella occulta
42% identity, 59% coverage

XAC3669 ABC transporter ATP-binding protein from Xanthomonas axonopodis pv. citri str. 306
45% identity, 54% coverage

SMSK321_1087 ABC transporter ATP-binding protein from Streptococcus mitis SK321
42% identity, 56% coverage

PotA / b1126 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
PotA / P69874 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11) from Escherichia coli (strain K12) (see 5 papers)
POTA_ECOLI / P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.11.1 / P69874 Spermidine/putrescine import ATP-binding protein PotA aka B1126, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 9 papers)
potA / MB|P69874 spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31 from Escherichia coli K12 (see 10 papers)
Z1831 ATP-binding component of spermidine/putrescine transport from Escherichia coli O157:H7 EDL933
NP_415644 spermidine preferential ABC transporter ATP binding subunit from Escherichia coli str. K-12 substr. MG1655
b1126 putrescine/spermidine ABC transporter ATPase protein from Escherichia coli str. K-12 substr. MG1655
S1208 ATP-binding component of spermidine/putrescine transport from Shigella flexneri 2a str. 2457T
41% identity, 58% coverage

CV_1197 probable ABC-type proline/glycine betaine transport systems, ATPase component from Chromobacterium violaceum ATCC 12472
40% identity, 60% coverage

DSY3918 hypothetical protein from Desulfitobacterium hafniense Y51
38% identity, 75% coverage

Halsa_1783 ABC transporter ATP-binding protein from Halanaerobium hydrogeniformans
40% identity, 56% coverage

WP_048053012 ABC transporter ATP-binding protein from Pyrococcus horikoshii
38% identity, 58% coverage

PFLU1212 putative ABC transport system ATP-binding protein from Pseudomonas fluorescens SBW25
38% identity, 66% coverage

YehX / b2129 glycine betaine ABC transporter ATP binding subunit YehX from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yehX / P33360 glycine betaine ABC transporter ATP binding subunit YehX from Escherichia coli (strain K12) (see 3 papers)
YEHX_ECOLI / P33360 Glycine betaine uptake system ATP-binding protein YehX; EC 7.4.2.- from Escherichia coli (strain K12) (see 2 papers)
b2129 predicted transporter subunit: ATP-binding component of ABC superfamily from Escherichia coli str. K-12 substr. MG1655
41% identity, 61% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 793,807 different protein sequences to 1,259,118 scientific articles. Searches against EuropePMC were last performed on March 13 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory