PaperBLAST – Find papers about a protein or its homologs

 

PaperBLAST

PaperBLAST Hits for SwissProt::P24497 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 (Klebsiella pneumoniae) (427 a.a., MESLTLQPIA...)

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Found 195 similar proteins in the literature:

AROA_KLEPN / P24497 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Klebsiella pneumoniae (see paper)
100% identity, 100% coverage

B5XY87 3-phosphoshikimate 1-carboxyvinyltransferase from Klebsiella pneumoniae (strain 342)
93% identity, 100% coverage

7tm5B / A0A0H3GV01 Crystal structure of shikimate-3-phosphate bound 3-phosphoshikimate 1- carboxyvinyltransferase from klebsiella pneumoniae
93% identity, 100% coverage

AroA / b0908 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Escherichia coli K-12 substr. MG1655 (see 12 papers)
aroA / P0A6D3 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Escherichia coli (strain K12) (see 14 papers)
AROA_ECOLI / P0A6D3 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Escherichia coli (strain K12) (see 9 papers)
P0A6D3 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Escherichia coli (see 12 papers)
2aa9A / P0A6D3 Epsp synthase liganded with shikimate (see paper)
b0908 3-phosphoshikimate 1-carboxyvinyltransferase from Escherichia coli str. K-12 substr. MG1655
NP_415428 3-phosphoshikimate 1-carboxyvinyltransferase from Escherichia coli str. K-12 substr. MG1655
ECs0991 5-enolpyruvylshikimate-3-phosphate synthetase from Escherichia coli O157:H7 str. Sakai
89% identity, 100% coverage

t1956 3-phosphoshikimate 1-carboxyvinyltransferase from Salmonella enterica subsp. enterica serovar Typhi Ty2
87% identity, 100% coverage

NP_459953 3-enolpyruvylshikimate-5-phosphate synthetase from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
P07637 3-phosphoshikimate 1-carboxyvinyltransferase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
STM0978 3-enolpyruvylshikimate-5-phosphate synthetase from Salmonella typhimurium LT2
STM14_1106 3-phosphoshikimate 1-carboxyvinyltransferase from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
87% identity, 100% coverage

C9EGX2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Rahnella aquatilis (see paper)
83% identity, 100% coverage

YPO1390 3-phosphoshikimate 1-carboxyvinyltransferase from Yersinia pestis CO92
81% identity, 100% coverage

y2783 5-enolpyruvylshikimate-3-phosphate synthetase from Yersinia pestis KIM
81% identity, 96% coverage

YPK_2670 3-phosphoshikimate 1-carboxyvinyltransferase from Yersinia pseudotuberculosis YPIII
81% identity, 100% coverage

AROA_VIBCH / Q9KRB0 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KRB0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Vibrio cholerae serotype O1 (see paper)
3nvsA / Q9KRB0 1.02 angstrom resolution crystal structure of 3-phosphoshikimate 1- carboxyvinyltransferase from vibrio cholerae in complex with shikimate-3-phosphate (partially photolyzed) and glyphosate
C3LN54 3-phosphoshikimate 1-carboxyvinyltransferase from Vibrio cholerae serotype O1 (strain M66-2)
VC1732 3-phosphoshikimate 1-carboxyvinyltransferase from Vibrio cholerae O1 biovar eltor str. N16961
74% identity, 99% coverage

APJL_0697 3-phosphoshikimate 1-carboxyvinyltransferase from Actinobacillus pleuropneumoniae serovar 3 str. JL03
73% identity, 98% coverage

HI1589 3-phosphoshikimate-1-carboxyvinyltransferase (aroA) from Haemophilus influenzae Rd KW20
73% identity, 98% coverage

U876_09965 3-phosphoshikimate 1-carboxyvinyltransferase from Aeromonas hydrophila NJ-35
71% identity, 100% coverage

Q482G5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Colwellia psychrerythraea (see paper)
68% identity, 99% coverage

SO_2404 3-phosphoshikimate 1-carboxyvinyltransferase from Shewanella oneidensis MR-1
67% identity, 99% coverage

Q03321 3-phosphoshikimate 1-carboxyvinyltransferase from Aeromonas salmonicida
67% identity, 99% coverage

BCc_191 3-phosphoshikimate 1-carboxyvinyltransferase from Buchnera aphidicola str. Cc (Cinara cedri)
53% identity, 97% coverage

bglu_1g08780 Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Burkholderia glumae BGR1
60% identity, 97% coverage

GIY62_15125 3-phosphoshikimate 1-carboxyvinyltransferase from Burkholderia plantarii
60% identity, 97% coverage

BMA0430 prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Burkholderia mallei ATCC 23344
60% identity, 62% coverage

P05466 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic from Arabidopsis thaliana
AT2G45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase from Arabidopsis thaliana
55% identity, 81% coverage

RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase from Ralstonia pseudosolanacearum GMI1000
RSc0907 PROBABLE 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE (EPSP SYNTHASE) PROTEIN from Ralstonia solanacearum GMI1000
58% identity, 97% coverage

A7Y7Y2 3-phosphoshikimate 1-carboxyvinyltransferase from Gossypium hirsutum
55% identity, 81% coverage

CHC_T00009255001 3-phosphoshikimate 1-carboxyvinyltransferase from Chondrus crispus
55% identity, 88% coverage

aroA / AAA21937.1 3-phosphoshikimate-1-carboxyvinyltransferase, partial from Aeromonas salmonicida (see paper)
59% identity, 99% coverage

AROA_PETHY / P11043 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EC 2.5.1.19 from Petunia hybrida (Petunia) (see 5 papers)
55% identity, 82% coverage

M1CGC9 3-phosphoshikimate 1-carboxyvinyltransferase from Solanum tuberosum
55% identity, 81% coverage

P23981 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic from Nicotiana tabacum
55% identity, 81% coverage

P10748 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic from Solanum lycopersicum
55% identity, 81% coverage

Ot14g02430 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta from Ostreococcus tauri
53% identity, 89% coverage

AT1G48860 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative from Arabidopsis thaliana
Q9FVP6 3-phosphoshikimate 1-carboxyvinyltransferase from Arabidopsis thaliana
55% identity, 81% coverage

LOC106438248 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like from Brassica napus
55% identity, 82% coverage

P17688 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic from Brassica napus
55% identity, 82% coverage

epsps-S / CAD01096.1 5-enolpyruvylshikimate-3-phosphate synthase, partial from Eleusine indica (see paper)
54% identity, 94% coverage

XP_008659331 3-phosphoshikimate 1-carboxyvinyltransferase 2 from Zea mays
54% identity, 83% coverage

Q93VK6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Oryza sativa (see paper)
54% identity, 82% coverage

A2T9R8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Dunaliella salina (see paper)
54% identity, 82% coverage

epsps-R / CAD01095.1 5-enolpyruvylshikimate-3-phosphate synthase, partial from Eleusine indica (see paper)
54% identity, 94% coverage

8umjA / A0A1D6NVZ6 Wild type epsp synthase complexed with glyphosate and shikimate-3- phosphate (see paper)
54% identity, 95% coverage

P12421 3-phosphoshikimate 1-carboxyvinyltransferase from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
56% identity, 93% coverage

NMCC_1342 5-enolpyruvoylshikimate-3-phosphate synthase from Neisseria meningitidis 053442
55% identity, 90% coverage

A0A2K1XRJ2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Populus trichocarpa (see paper)
50% identity, 85% coverage

P23281 3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) from Nicotiana tabacum
55% identity, 75% coverage

K9PSG5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Calothrix sp. (see paper)
44% identity, 98% coverage

B2IYE4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc punctiforme (see paper)
43% identity, 99% coverage

Q3MAV9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc sp. (see paper)
42% identity, 99% coverage

Q8YMB5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc sp. (see paper)
all5019 3-phosphoshikimate 1-carboxyvinyltransferase from Nostoc sp. PCC 7120
42% identity, 99% coverage

SLI_1096 3-phosphoshikimate 1-carboxyvinyltransferase from Streptomyces lividans 1326
41% identity, 95% coverage

SCO6819 3-phosphoshikimate 1-carboxyvinyltransferase from Streptomyces coelicolor A3(2)
42% identity, 95% coverage

TERG_03083 3-phosphoshikimate 1-carboxyvinyltransferase from Trichophyton rubrum CBS 118892
43% identity, 32% coverage

G0S061 Pentafunctional AROM polypeptide from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
44% identity, 27% coverage

6hqvA / G0S061 Pentafunctional arom complex from chaetomium thermophilum (see paper)
45% identity, 26% coverage

SS1G_13550, XP_001585666 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
43% identity, 26% coverage

PAAG_07102 pentafunctional AROM polypeptide from Paracoccidioides lutzii Pb01
42% identity, 26% coverage

PAS_chr3_0506 Pentafunctional arom protein from Komagataella phaffii GS115
41% identity, 26% coverage

XP_722769 Aro1p from Candida albicans SC5314
41% identity, 26% coverage

7tbuA / Q5AME2 Crystal structure of the 5-enolpyruvate-shikimate-3-phosphate synthase (epsps) domain of aro1 from candida albicans in complex with shikimate-3-phosphate (see paper)
41% identity, 89% coverage

Afu1g13740 pentafunctional polypeptide (AroM), putative from Aspergillus fumigatus Af293
42% identity, 25% coverage

ARO1_EMENI / P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see 2 papers)
P07547 shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans (see paper)
aromA pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans (see 4 papers)
41% identity, 26% coverage

AO090012000502 No description from Aspergillus oryzae RIB40
41% identity, 25% coverage

XP_449840 hypothetical protein from Candida glabrata CBS 138
39% identity, 26% coverage

Pc16g12160 uncharacterized protein from Penicillium rubens
40% identity, 26% coverage

ARO1 / P08566 pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
ARO1_YEAST / P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
NP_010412 pentafunctional protein ARO1p from Saccharomyces cerevisiae S288C
YDR127W Aro1p from Saccharomyces cerevisiae
39% identity, 25% coverage

DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase from Desulfovibrio vulgaris str. Miyazaki F
36% identity, 91% coverage

P0CM23 Pentafunctional AROM polypeptide from Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)
P0CM22 Pentafunctional AROM polypeptide from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
CNB01990 aromatic amino acid family biosynthesis-related protein from Cryptococcus neoformans var. neoformans JEC21
39% identity, 25% coverage

CNAG_03701 3-phosphoshikimate 1-carboxyvinyltransferase from Cryptococcus neoformans var. grubii H99
39% identity, 25% coverage

FTT_0588 3-phosphoshikimate 1-carboxyvinyltransferase from Francisella tularensis subsp. tularensis SCHU S4
36% identity, 98% coverage

FTN_1091 3-phosphoshikimate 1-carboxyvinyltransferase from Francisella tularensis subsp. novicida U112
36% identity, 98% coverage

CKR_0704 hypothetical protein from Clostridium kluyveri NBRC 12016
33% identity, 98% coverage

BF0737 3-phosphoshikimate 1-carboxyvinyltransferase from Bacteroides fragilis YCH46
34% identity, 97% coverage

BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Bacteroides thetaiotaomicron VPI-5482
35% identity, 96% coverage

CAC0895 5-enolpyruvylshikimate-3-phosphate synthase from Clostridium acetobutylicum ATCC 824
30% identity, 99% coverage

Ddes_0335 3-phosphoshikimate 1-carboxyvinyltransferase from Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
34% identity, 83% coverage

Echvi_0122 3-phosphoshikimate 1-carboxyvinyltransferase from Echinicola vietnamensis DSM 17526
35% identity, 98% coverage

TK0263 5-enolpyruvylshikimate-3-phosphate synthase from Thermococcus kodakaraensis KOD1
36% identity, 98% coverage

DVU0463 3-phosphoshikimate 1-carboxyvinyltransferase from Desulfovibrio vulgaris Hildenborough
36% identity, 92% coverage

Cbei_4575 3-phosphoshikimate 1-carboxyvinyltransferase from Clostridium beijerincki NCIMB 8052
32% identity, 97% coverage

HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase from Phocaeicola vulgatus CL09T03C04
33% identity, 97% coverage

TON_1138 5-enolpyruvylshikimate-3-phosphate synthase from Thermococcus onnurineus NA1
35% identity, 98% coverage

A1Z0H6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Pseudomonas fluorescens (see paper)
37% identity, 91% coverage

7m0oA / B5HND8 Dgt-28 epsps (see paper)
37% identity, 95% coverage

cg0873 3-phosphoshikimate 1-carboxyvinyltransferase from Corynebacterium glutamicum ATCC 13032
35% identity, 93% coverage

SCO5212 3-phosphoshikimate 1-carboxyvinyltransferase from Streptomyces coelicolor A3(2)
SLI_5501 3-phosphoshikimate 1-carboxyvinyltransferase from Streptomyces lividans 1326
35% identity, 92% coverage

A3TGI7 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Janibacter sp. (see paper)
35% identity, 94% coverage

AAFF35_21465 3-phosphoshikimate 1-carboxyvinyltransferase from Pedobacter sp. FW305-3-2-15-E-R2A2
30% identity, 95% coverage

MSMEG_1890, WP_011727983 3-phosphoshikimate 1-carboxyvinyltransferase from Mycolicibacterium smegmatis MC2 155
MSMEG_1890 3-phosphoshikimate 1-carboxyvinyltransferase from Mycobacterium smegmatis str. MC2 155
33% identity, 92% coverage

XNR_1588 3-phosphoshikimate 1-carboxyvinyltransferase from Streptomyces albidoflavus
36% identity, 90% coverage

BIF_00329 3-phosphoshikimate 1-carboxyvinyltransferase from Bifidobacterium animalis subsp. lactis BB-12
31% identity, 89% coverage

L7PA93 3-phosphoshikimate 1-carboxyvinyltransferase from Janibacter limosus
33% identity, 94% coverage

B118_RS0101230 3-phosphoshikimate 1-carboxyvinyltransferase from Salinispora pacifica CNR114
31% identity, 94% coverage

STH1419 3-phosphoshikimate-1-carboxyvinyltransferase from Symbiobacterium thermophilum IAM 14863
33% identity, 93% coverage

B8CWX4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Halothermothrix orenii (see paper)
30% identity, 96% coverage

TWT567 3-phosphoshikimate 1-carboxyvinyltransferase from Tropheryma whipplei str. Twist
30% identity, 83% coverage

CT366 Phosphoshikimate 1-carboxyl vinyltransferase from Chlamydia trachomatis D/UW-3/CX
31% identity, 92% coverage

lmo1923 similar to 5-enolpyruvylshikimate-3-phosphate synthase from Listeria monocytogenes EGD-e
29% identity, 94% coverage

B0B7T5 3-phosphoshikimate 1-carboxyvinyltransferase from Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
CTL0620 3-phosphoshikimate 1-carboxyvinyltransferase from Chlamydia trachomatis 434/Bu
31% identity, 92% coverage

F5A7Q0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Bacillus cereus (see paper)
29% identity, 99% coverage

An08g06810 uncharacterized protein from Aspergillus niger
38% identity, 26% coverage

PF1699 3-phosphoshikimate 1-carboxyvinyltransferase from Pyrococcus furiosus DSM 3638
30% identity, 95% coverage

XP_002773648 3-dehydroquinate synthase, putative from Perkinsus marinus ATCC 50983
31% identity, 21% coverage

aroA / CAH19218.1 3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas putida (see paper)
Q683S1 3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas putida
29% identity, 97% coverage

K4120_10745 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus velezensis
30% identity, 98% coverage

mycA4 / H9TE88 shimimate dehydratase/3,4-dihydroxycyclohexa-1,5-diene-1-carboxylate--CoA ligase from Streptomyces flaveolus (see 3 papers)
31% identity, 39% coverage

JS608_02738, JTE87_01546 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus amyloliquefaciens
29% identity, 98% coverage

PG1944 3-phosphoshikimate 1-carboxyvinyltransferase from Porphyromonas gingivalis W83
32% identity, 97% coverage

A7Z612 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)
29% identity, 98% coverage

K9VBD9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Oscillatoria sp. (see paper)
31% identity, 91% coverage

I4GHG6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Microcystis aeruginosa (see paper)
30% identity, 95% coverage

A0A0P4UM05 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Leptolyngbya boryana (see paper)
29% identity, 93% coverage

2o0bA / P9WPY5 Mycobacterium tuberculosis epsp synthase in complex with s3p (partially photolyzed)
33% identity, 95% coverage

AROA_MYCTU / P9WPY5 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
P9WPY5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Mycobacterium tuberculosis (see paper)
Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase from Mycobacterium tuberculosis H37Rv
NP_217744 3-phosphoshikimate 1-carboxyvinyltransferase from Mycobacterium tuberculosis H37Rv
33% identity, 90% coverage

Q1H624 3-phosphoshikimate 1-carboxyvinyltransferase (Fragment) from Halovibrio variabilis
32% identity, 93% coverage

AROA_COXBU / Q83E11 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q83E11 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Coxiella burnetii (see paper)
NP_819558 3-phosphoshikimate 1-carboxyvinyltransferase from Coxiella burnetii RSA 493
31% identity, 93% coverage

CCA00723 3-phosphoshikimate 1-carboxyvinyltransferase from Chlamydophila caviae GPIC
29% identity, 91% coverage

JS609_02206 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus subtilis
28% identity, 98% coverage

3slhD / Q83E11 1.70 angstrom resolution structure of 3-phosphoshikimate 1- carboxyvinyltransferase (aroa) from coxiella burnetii in complex with shikimate-3-phosphate and glyphosate
31% identity, 93% coverage

aroE / P20691 5-enolpyruvoylshikimate-3-phosphate synthase (EC 2.5.1.19) from Bacillus subtilis (strain 168) (see 3 papers)
BSU22600 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus subtilis subsp. subtilis str. 168
P20691 3-phosphoshikimate 1-carboxyvinyltransferase from Bacillus subtilis (strain 168)
28% identity, 97% coverage

SSU0557 3-phosphoshikimate 1-carboxyvinyltransferase from Streptococcus suis P1/7
29% identity, 97% coverage

Mb3256 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE AROA (5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE) (EPSP SYNTHASE) (EPSPS) from Mycobacterium bovis AF2122/97
33% identity, 90% coverage

A0A090C137 3-phosphoshikimate 1-carboxyvinyltransferase from Acinetobacter baumannii
AB57_2630 hypothetical protein from Acinetobacter baumannii AB0057
ABBFA_001168 3-phosphoshikimate 1-carboxyvinyltransferase from Acinetobacter baumannii AB307-0294
30% identity, 53% coverage

K9TX81 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Chroococcidiopsis thermalis (see paper)
32% identity, 92% coverage

A1S_2276 hypothetical protein from Acinetobacter baumannii ATCC 17978
30% identity, 56% coverage

ABUW_1366 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Acinetobacter baumannii
30% identity, 54% coverage

XF2324 3-phosphoshikimate 1-carboxyvinyltransferase from Xylella fastidiosa 9a5c
33% identity, 89% coverage

AROA1_HALH5 / Q9KCA6 3-phosphoshikimate 1-carboxyvinyltransferase 1; 5-enolpyruvylshikimate-3-phosphate synthase 1; EPSP synthase 1; EPSPS 1; EC 2.5.1.19 from Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (Bacillus halodurans)
30% identity, 99% coverage

CPSIT_0767 3-phosphoshikimate 1-carboxyvinyltransferase from Chlamydia psittaci 6BC
30% identity, 91% coverage

IUJ47_RS10460 3-phosphoshikimate 1-carboxyvinyltransferase from Enterococcus faecalis
28% identity, 97% coverage

EF1566 3-phosphoshikimate 1-carboxyvinyltransferase from Enterococcus faecalis V583
28% identity, 97% coverage

PA14_23310 EPSP synthase/prephenate dehydrogenase from Pseudomonas aeruginosa UCBPP-PA14
30% identity, 56% coverage

Q9RVD3 3-phosphoshikimate 1-carboxyvinyltransferase from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
31% identity, 95% coverage

PP1770 prephenate dehydrogenase, putative/3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas putida KT2440
29% identity, 56% coverage

lp_2035 3-phosphoshikimate 1-carboxyvinyltransferase from Lactobacillus plantarum WCFS1
lp_2035 3-phosphoshikimate 1-carboxyvinyltransferase from Lactiplantibacillus plantarum WCFS1
29% identity, 98% coverage

PA3164 still frameshift 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE prephenate dehydrogenase from Pseudomonas aeruginosa PAO1
30% identity, 56% coverage

MCR_0888 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Moraxella catarrhalis BBH18
30% identity, 55% coverage

T303_04400 3-phosphoshikimate 1-carboxyvinyltransferase from Streptococcus thermophilus ASCC 1275
28% identity, 95% coverage

YP_003433377 3-phosphoshikimate 1-carboxyvinyltransferase from Hydrogenobacter thermophilus TK-6
28% identity, 97% coverage

XHV734_3365 3-phosphoshikimate 1-carboxyvinyltransferase from Xanthomonas hortorum pv. vitians
33% identity, 95% coverage

E2P69_RS07515 3-phosphoshikimate 1-carboxyvinyltransferase from Xanthomonas perforans
33% identity, 95% coverage

slr0444 3-phosphoshikimate 1-carboxyvinyltransferase from Synechocystis sp. PCC 6803
30% identity, 95% coverage

K9RIB8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Rivularia sp. PCC 7116 (see paper)
28% identity, 91% coverage

R7B7W1 3-phosphoshikimate 1-carboxyvinyltransferase from Eggerthella sp. CAG:298
30% identity, 95% coverage

TTHA0457 3-phosphoshikimate 1-carboxyvinyltransferase from Thermus thermophilus HB8
32% identity, 99% coverage

Pfl01_4074 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas fluorescens Pf0-1
29% identity, 57% coverage

A0A0D6KU47 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Tolypothrix sp. (see paper)
30% identity, 92% coverage

SAPIG1464 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus aureus subsp. aureus ST398
29% identity, 95% coverage

B1XM36 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus sp. (see paper)
30% identity, 92% coverage

K9QNN0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc sp. (see paper)
29% identity, 92% coverage

aroA / AAA71897.1 3-phosphoshikimate-1-carboxyvinyltransferase from Staphylococcus aureus (see paper)
30% identity, 95% coverage

SAOUHSC_01481 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus aureus subsp. aureus NCTC 8325
Q05615 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus aureus (strain NCTC 8325 / PS 47)
MW1354 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE from Staphylococcus aureus subsp. aureus MW2
29% identity, 94% coverage

BB562_07550 3-phosphoshikimate 1-carboxyvinyltransferase from Lactiplantibacillus pentosus
30% identity, 97% coverage

B4VHX1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Coleofasciculus chthonoplastes (see paper)
29% identity, 91% coverage

K9TRT1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Oscillatoria sp. (see paper)
29% identity, 92% coverage

Q31RQ5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus elongatus (see paper)
Q5N2J9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus elongatus (see paper)
29% identity, 94% coverage

ZMO1796 3-phosphoshikimate 1-carboxyvinyltransferase from Zymomonas mobilis subsp. mobilis ZM4
29% identity, 91% coverage

SAV1464 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus aureus subsp. aureus Mu50
SA1297 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus aureus subsp. aureus N315
29% identity, 94% coverage

PSF113_1640 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas ogarae
28% identity, 57% coverage

A0A139XBW5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Scytonema hofmannii (see paper)
29% identity, 91% coverage

ELZ14_08510, PSEBR_a1552 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase from Pseudomonas brassicacearum
28% identity, 57% coverage

ACIAD2222 bifunctional protein [Includes: putative prephenate or cyclohexadienyl dehydrogenase; 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) (AroA)] from Acinetobacter sp. ADP1
27% identity, 55% coverage

A6TL04 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Alkaliphilus metalliredigens (see paper)
27% identity, 98% coverage

B488_RS00545 3-phosphoshikimate 1-carboxyvinyltransferase from Liberibacter crescens BT-1
28% identity, 92% coverage

AWH67_RS01510 3-phosphoshikimate 1-carboxyvinyltransferase from Bartonella bacilliformis
30% identity, 94% coverage

P56197 3-phosphoshikimate 1-carboxyvinyltransferase from Helicobacter pylori (strain ATCC 700392 / 26695)
HP0401 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) from Helicobacter pylori 26695
27% identity, 92% coverage

AROA_STRPN / Q9S400 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see 2 papers)
Q9S400 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Streptococcus pneumoniae (see paper)
26% identity, 96% coverage

BAAA_1000022 3-phosphoshikimate 1-carboxyvinyltransferase from Brucella abortus str. 2308 A
BAB1_0023 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo... from Brucella melitensis biovar Abortus 2308
29% identity, 91% coverage

1rf4A / Q9S400 Structural studies of streptococcus pneumoniae epsp synthase, tetrahedral intermediate bound state (see paper)
26% identity, 96% coverage

BMA0235 3-phosphoshikimate-1-carboxyvinyltransferase, putative from Burkholderia mallei ATCC 23344
28% identity, 91% coverage

A6WUV8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Brucella anthropi (see paper)
30% identity, 90% coverage

Q46550 3-phosphoshikimate 1-carboxyvinyltransferase from Dichelobacter nodosus
32% identity, 92% coverage

C3MC80 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Sinorhizobium fredii (see paper)
29% identity, 92% coverage

2gg6A / Q9R4E4 Cp4 epsp synthase liganded with s3p (see paper)
29% identity, 92% coverage

Q71LY8 3-phosphoshikimate 1-carboxyvinyltransferase from Glycine max
29% identity, 90% coverage

AROA_AGRSC / Q9R4E4 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; CP4 EPSP synthase; EC 2.5.1.19 from Agrobacterium sp. (strain CP4) (see 2 papers)
Q9R4E4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Agrobacterium sp. (see paper)
29% identity, 90% coverage

SE1153 3-phosphoshikimate 1-carboxyvinyltransferase from Staphylococcus epidermidis ATCC 12228
26% identity, 94% coverage

Cj0895c 3-phosphoshikimate 1-carboxyvinyltransferase from Campylobacter jejuni subsp. jejuni NCTC 11168
P0C630 3-phosphoshikimate 1-carboxyvinyltransferase from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
27% identity, 95% coverage

B4WHQ7 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Synechococcus sp. (see paper)
28% identity, 86% coverage

A1S_0685 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Acinetobacter baumannii ATCC 17978
E5A72_RS10790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Acinetobacter baumannii ATCC 17978
26% identity, 93% coverage

5u4hA / A0A0R0VXX6 1.05 angstrom resolution crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from acinetobacter baumannii in covalently bound complex with (2r)-2-(phosphonooxy)propanoic acid.
26% identity, 93% coverage

ACIAD0660 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) from Acinetobacter sp. ADP1
25% identity, 93% coverage

CCC13826_1265 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Campylobacter concisus 13826
22% identity, 93% coverage

Q6W3D0 shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii (see paper)
43% identity, 2% coverage

P45025 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) from Haemophilus influenzae (see 2 papers)
HI1081 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murZ) from Haemophilus influenzae Rd KW20
25% identity, 69% coverage

2rl1A / P45025 Crystal structure of udp-n-acetylglucosamine enolpyruvyl transferase from haemophilus influenzae in complex with udp-n-acetylglucosamine (see paper)
25% identity, 69% coverage

CDR20291_0122 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 from Clostridium difficile R20291
CD0123 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Clostridium difficile 630
24% identity, 67% coverage

Q9Z3Z6 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Pseudomonas putida
24% identity, 69% coverage

PP0964 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Pseudomonas putida KT2440
23% identity, 95% coverage

6q03A / Q18CL1 Crystal structure of mura from clostridium difficile in the presence of udp-n-acetyl-alpha-d-muramic acid with modified cys116 (s-[(1s)-1- carboxy-1-(phosphonooxy)ethyl]-l-cysteine)
24% identity, 67% coverage

6cn1A / Q88P88 2.75 angstrom resolution crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from pseudomonas putida in complex with uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2r)-2- (phosphonooxy)propanoic acid and magnesium
24% identity, 69% coverage

PSPPH_4139 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Pseudomonas syringae pv. phaseolicola 1448A
23% identity, 84% coverage

NMB0011 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Neisseria meningitidis MC58
26% identity, 74% coverage

VspiD_010100011745 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Verrucomicrobium spinosum DSM 4136
23% identity, 89% coverage

OJAG_15040 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Oerskovia enterophila
24% identity, 78% coverage

CBU_0751 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Coxiella burnetii RSA 493
22% identity, 74% coverage

WP_038089003 UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Acidihalobacter prosperus
25% identity, 84% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory