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PaperBLAST

PaperBLAST Hits for SwissProt::P40886 Hexose transporter HXT8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)) (569 a.a., MTDRKTNLPE...)

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Predict protein localization: PSORTb

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Found 250 similar proteins in the literature:

HXT8_YEAST / P40886 Hexose transporter HXT8 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
YJL214W Hxt8p from Saccharomyces cerevisiae
100% identity, 100% coverage

TC 2.A.1.1.6 / P13181 Galactose, glucose uniporter, Gal2. Also transports xylose from Saccharomyces cerevisiae (Baker's yeast) (see 4 papers)
GAL2 / GI|1360445 galactose transporter from Saccharomyces cerevisiae
NP_013182 galactose permease GAL2 from Saccharomyces cerevisiae S288C
NP_013182, YLR081W Gal2p from Saccharomyces cerevisiae
68% identity, 99% coverage

KHT2 / CAA87389.1 permease from Kluyveromyces lactis (see paper)
P53387 Hexose transporter 2 from Kluyveromyces lactis
71% identity, 95% coverage

HXT6 / GI|1230670 high-affinity hexose transporter HXT6 from Saccharomyces cerevisiae
YDR343C High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3 from Saccharomyces cerevisiae
NP_010630 hexose transporter HXT6 from Saccharomyces cerevisiae S288C
P39003 High-affinity hexose transporter HXT6 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
70% identity, 98% coverage

HXT7_YEAST / P39004 High-affinity hexose transporter HXT7 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
TC 2.A.1.1.31 / P39004 High affinity, glucose-repressible, glucose (hexose) uniporter (Hxt6/Hxt7). Asn331 and hydrophobic residue side chains in TMS5 determine substrate affinity from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
NP_010629, YDR342C High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt6p, expressed at high basal levels relative to other HXTs, expression repressed by high glucose levels from Saccharomyces cerevisiae
NP_010629 hexose transporter HXT7 from Saccharomyces cerevisiae S288C
70% identity, 98% coverage

KLMA_50360 hexose transporter 2 from Kluyveromyces marxianus DMKU3-1042
72% identity, 95% coverage

XP_444861 hypothetical protein from Candida glabrata CBS 138
70% identity, 96% coverage

XP_444860 hypothetical protein from Candida glabrata CBS 138
68% identity, 97% coverage

KLMA_50361 hexose transporter 2 from Kluyveromyces marxianus DMKU3-1042
72% identity, 95% coverage

HXT4_YEAST / P32467 Low-affinity glucose transporter HXT4; Low-affinity glucose transporter LGT1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
TC 2.A.1.1.30 / P32467 Low affinity, constitutive, glucose (hexose; xylose) uniporter, Hxt4 (LGT1; Rag1) (also transports arsenic trioxide [As(OH)3] as do Hxtl, 3, 5, 7 and 9) from Saccharomyces cerevisiae (Baker's yeast) (see 5 papers)
HXT4 low-affinity glucose transporter HXT4 from Saccharomyces cerevisiae (see paper)
NP_011960 hexose transporter HXT4 from Saccharomyces cerevisiae S288C
69% identity, 97% coverage

XP_444803 hypothetical protein from Candida glabrata CBS 138
69% identity, 96% coverage

XP_444843 hypothetical protein from Candida glabrata CBS 138
68% identity, 99% coverage

NP_011960, YHR092C High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose from Saccharomyces cerevisiae
69% identity, 95% coverage

TC 2.A.1.1.105 / P54862 Hexose transporter HXT11 (Low-affinity glucose transporter LGT3) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
YOL156W Hxt11p from Saccharomyces cerevisiae
65% identity, 96% coverage

YJL219W Hxt9p from Saccharomyces cerevisiae
P40885 Hexose transporter HXT9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
64% identity, 97% coverage

KLMA_50364 low-affinity glucose transporter from Kluyveromyces marxianus DMKU3-1042
67% identity, 95% coverage

P18631 Low-affinity glucose transporter from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
XP_453656 hypothetical protein from Kluyveromyces lactis NRRL Y-1140
67% identity, 94% coverage

XP_447265 hypothetical protein from Candida glabrata CBS 138
67% identity, 96% coverage

XP_445530 hypothetical protein from Candida glabrata CBS 138
64% identity, 96% coverage

HXT3_YEAST / P32466 Low-affinity glucose transporter HXT3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
NP_010632 hexose transporter HXT3 from Saccharomyces cerevisiae S288C
NP_010632, YDR345C Hxt3p from Saccharomyces cerevisiae
66% identity, 98% coverage

NP_011964 hexose transporter HXT5 from Saccharomyces cerevisiae S288C
P38695 Probable glucose transporter HXT5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
YHR096C Hexose transporter with moderate affinity for glucose, induced in the presence of non-fermentable carbon sources, induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs from Saccharomyces cerevisiae
68% identity, 88% coverage

HXT1 / P32465 low-affinity glucose/mannose transporter HXT1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 65 papers)
HXT1_YEAST / P32465 Low-affinity glucose transporter HXT1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
TC 2.A.1.1.108 / P32465 Low-affinity glucose transporter HXT1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 9 papers)
NP_011962 hexose transporter HXT1 from Saccharomyces cerevisiae S288C
NP_011962, YHR094C Hxt1p from Saccharomyces cerevisiae
65% identity, 96% coverage

TDEL0A04250 uncharacterized protein from Torulaspora delbrueckii
63% identity, 93% coverage

KLMA_50363 low-affinity glucose transporter from Kluyveromyces marxianus DMKU3-1042
66% identity, 95% coverage

XP_444845 hypothetical protein from Candida glabrata CBS 138
68% identity, 90% coverage

TC 2.A.1.1.111 / P23585 High-affinity glucose transporter HXT2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
NP_013724 hexose transporter HXT2 from Saccharomyces cerevisiae S288C
NP_013724, YMR011W High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose from Saccharomyces cerevisiae
63% identity, 96% coverage

XP_002490706 High-affinity glucose transporter of the major facilitator superfamily from Komagataella phaffii GS115
61% identity, 91% coverage

TC 2.A.1.1.5 / P43581 Hexose uniporter from Saccharomyces cerevisiae (Baker's yeast) (see 2 papers)
HXT10 / RF|NP_116644.1 hexose transporter HXT10 from Saccharomyces cerevisiae
YFL011W Hxt10p from Saccharomyces cerevisiae
65% identity, 90% coverage

KLMA_50362 hexose transporter from Kluyveromyces marxianus DMKU3-1042
72% identity, 75% coverage

TC 2.A.1.1.110 / P39924 Hexose transporter HXT13 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
NP_010845 hexose transporter HXT13 from Saccharomyces cerevisiae S288C
YEL069C Hexose transporter, induced in the presence of non-fermentable carbon sources, induced by low levels of glucose, repressed by high levels of glucose from Saccharomyces cerevisiae
55% identity, 94% coverage

YNR072W Hexose transporter, up-regulated in media containing raffinose and galactose at pH 7.7 versus pH 4.7, repressed by high levels of glucose from Saccharomyces cerevisiae
NP_014470 hexose transporter HXT17 from Saccharomyces cerevisiae S288C
54% identity, 97% coverage

TC 2.A.1.1.107 / P54854 Hexose transporter HXT15 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
NP_010036 hexose transporter HXT15 from Saccharomyces cerevisiae S288C
YDL245C Hxt15p from Saccharomyces cerevisiae
55% identity, 94% coverage

P47185 Hexose transporter HXT16 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
NP_012692 hexose transporter HXT16 from Saccharomyces cerevisiae S288C
YJR158W Hxt16p from Saccharomyces cerevisiae
55% identity, 94% coverage

HGT7 potential hexose transporter from Candida albicans (see 2 papers)
56% identity, 92% coverage

XP_719472 Hgt7p from Candida albicans SC5314
56% identity, 92% coverage

TC 2.A.1.1.67 / Q2MDH1 Glucose/xylose facilitator-1, GXF1 (functions by sugar uniport; low affinity from Candida intermedia (see paper)
gxf1 / CAI77652.1 glucose/xylose facilitator 1 from [Candida] intermedia (see paper)
58% identity, 91% coverage

HGT6 potential hexose transporter from Candida albicans (see 2 papers)
54% identity, 93% coverage

P40441 Putative hexose transporter 12 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
68% identity, 79% coverage

CPAR2_212860 uncharacterized protein from Candida parapsilosis
55% identity, 93% coverage

O94151 Sugar transporter 2 protein from Scheffersomyces stipitis
XP_001384295 sugar transporter from Scheffersomyces stipitis CBS 6054
55% identity, 89% coverage

Q9UWF5 Sugar transporter 3 from Scheffersomyces stipitis
XP_001386019 Sugar UpTake (tentative) from Scheffersomyces stipitis CBS 6054
55% identity, 89% coverage

XP_001387898 hexose transporter from Scheffersomyces stipitis CBS 6054
O94155 Sugar transporter 1 from Scheffersomyces stipitis
52% identity, 96% coverage

B5RTM9 DEHA2D18876p from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
54% identity, 93% coverage

AO090020000259 No description from Aspergillus oryzae RIB40
43% identity, 83% coverage

XP_025453682 general substrate transporter from Aspergillus niger CBS 101883
43% identity, 86% coverage

AFUA_2G11520 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
40% identity, 94% coverage

An05g01290 uncharacterized protein from Aspergillus niger
43% identity, 86% coverage

CIMG_08310 sugar porter (SP) family MFS transporter from Coccidioides immitis RS
42% identity, 88% coverage

AFUA_5G01160, Afu5g01160 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
39% identity, 98% coverage

ATEG_03527 uncharacterized protein from Aspergillus terreus NIH2624
42% identity, 87% coverage

PDIP_55020 MFS monosaccharide transporter, putative from Penicillium digitatum
40% identity, 95% coverage

AFUA_7G00950, Afu7g00950 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
42% identity, 88% coverage

SJAG_03606 hexose transporter Ght6 from Schizosaccharomyces japonicus yFS275
41% identity, 85% coverage

TC 2.A.1.1.22 / O74849 Hexose:H+ symporter, Ght6 (Fructose > Glucose) from Schizosaccharomyces pombe (Fission yeast) (see 3 papers)
ght6 / RF|NP_587739.1 high-affinity fructose transporter ght6 from Schizosaccharomyces pombe (see paper)
SPCC1235.13 hexose transporter Ght6 (PMID 10735857) from Schizosaccharomyces pombe
41% identity, 86% coverage

ATEG_08653 uncharacterized protein from Aspergillus terreus NIH2624
44% identity, 52% coverage

NP_587740 plasma membrane high-affinity glucose/fructose:proton symporter Ght5 from Schizosaccharomyces pombe
SPCC1235.14 hexose transporter Ght5 (PMID 10735857) from Schizosaccharomyces pombe
41% identity, 87% coverage

TC 2.A.1.1.21 / O74969 Hexose:H+ symporter, Ght2 (Glucose > Fructose) from Schizosaccharomyces pombe (Fission yeast) (see 3 papers)
ght2 / RF|NP_596425.1 high-affinity glucose transporter ght2 from Schizosaccharomyces pombe (see paper)
NP_596425 plasma membrane glucose/fructose:proton symporter Ght2 from Schizosaccharomyces pombe
41% identity, 87% coverage

An03g02190 uncharacterized protein from Aspergillus niger
38% identity, 94% coverage

VDAG_05443 galactose transporter from Verticillium dahliae VdLs.17
40% identity, 86% coverage

TC 2.A.1.1.36 / Q400D8 The low affinity, glucose-inducible glucose transporter, MstE from Emericella nidulans (Aspergillus nidulans) (see paper)
mstE low affinity glucose transporter MstE from Emericella nidulans (see paper)
40% identity, 92% coverage

An02g03540 uncharacterized protein from Aspergillus niger
43% identity, 87% coverage

G0RKF0 Galactose permease from Hypocrea jecorina (strain QM6a)
42% identity, 86% coverage

TC 2.A.1.1.58 / Q8J0U9 Low affinity glucose:H+ symporter, MstC from Aspergillus niger
43% identity, 85% coverage

GHT8_SCHPO / Q9P3U7 Probable high-affinity hexose transporter ght8, mitochondrial; Hexose transporter 8 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPCC548.06c hexose transporter Ght8 (predicted) from Schizosaccharomyces pombe
42% identity, 83% coverage

SJAG_03608 hexose transporter Ght5 from Schizosaccharomyces japonicus yFS275
40% identity, 87% coverage

TC 2.A.1.1.112 / Q9P3U6 High-affinity glucose transporter Ght1 (Hexose transporter 1) from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (see 2 papers)
SPCC548.07c hexose transporter Ght1 (PMID 10735857) from Schizosaccharomyces pombe
41% identity, 87% coverage

CCM_01166 siderophore iron transporter mirC from Cordyceps militaris CM01
41% identity, 87% coverage

FGSG_02978 hypothetical protein from Fusarium graminearum PH-1
40% identity, 90% coverage

Q1K4S3 Hexose transporter HXT13 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
NCU01633 hexose transporter HXT13 from Neurospora crassa OR74A
41% identity, 86% coverage

XP_454897 hypothetical protein from Kluyveromyces lactis NRRL Y-1140
41% identity, 89% coverage

FGSG_07582 hypothetical protein from Fusarium graminearum PH-1
41% identity, 82% coverage

TRIREDRAFT_106556 galactose permease from Trichoderma reesei QM6a
G0RGR7 Galactose permease from Hypocrea jecorina (strain QM6a)
38% identity, 93% coverage

FVEG_12687 MFS transporter, SP family, sugar:H+ symporter from Fusarium verticillioides 7600
40% identity, 83% coverage

SS1G_04841 hexose transporter from Sclerotinia sclerotiorum 1980 UF-70
41% identity, 83% coverage

XP_007868407 uncharacterized protein from Gloeophyllum trabeum ATCC 11539
38% identity, 95% coverage

TC 2.A.1.1.23 / Q92339 Gluconate:H+ symporter, Ght3 from Schizosaccharomyces pombe (Fission yeast) (see 2 papers)
ght3 / RF|NP_592790.1 high-affinity gluconate transporter ght3 from Schizosaccharomyces pombe (see paper)
SPAC1F8.01 hexose transporter Ght3 (PMID 10735857) from Schizosaccharomyces pombe
39% identity, 84% coverage

SPBC1348.14c hexose transporter Ght7 from Schizosaccharomyces pombe
40% identity, 78% coverage

CNN00260 sugar transporter from Cryptococcus neoformans var. neoformans JEC21
37% identity, 85% coverage

SJAG_02958 hexose transporter Ght5 from Schizosaccharomyces japonicus yFS275
40% identity, 79% coverage

H6S33_000450 uncharacterized protein from Morchella sextelata
39% identity, 86% coverage

ght4 / RF|NP_595064.1 hexose transporter Ght4 from Schizosaccharomyces pombe (see paper)
SPBC1683.08 hexose transporter Ght4 (PMID 10735857) from Schizosaccharomyces pombe
36% identity, 85% coverage

XP_042995203 uncharacterized protein from Ustilaginoidea virens
38% identity, 88% coverage

TC 2.A.1.1.109 / P42833 Hexose transporter HXT14 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
YNL318C Hxt14p from Saccharomyces cerevisiae
38% identity, 86% coverage

NCU05627 high affinity glucose transporter ght1 from Neurospora crassa OR74A
37% identity, 87% coverage

MGG_00040 high-affinity glucose transporter ght2 from Pyricularia oryzae 70-15
37% identity, 86% coverage

CH_124310 high-affinity glucose transporter ght2 from Magnaporthe grisea 70-15 (see paper)
37% identity, 86% coverage

FGSG_05042, XP_011323525 hypothetical protein from Fusarium graminearum PH-1
36% identity, 87% coverage

TC 2.A.1.1.68 / A3M0N3 The Glucose Transporter/Sensor Rgt2 from Pichia stipitis (see paper)
XP_001386588 glucose transporter/sensor from Scheffersomyces stipitis CBS 6054
37% identity, 86% coverage

CTRG_06249 hypothetical protein from Candida tropicalis MYA-3404
36% identity, 89% coverage

TC 2.A.1.1.51 / Q2MEV7 Glucose/xylose: H+ symporter, Gsx1 from Candida intermedia (see paper)
GXS1 / CAI44932.1 glucose/xylose symporter 1 from [Candida] intermedia (see paper)
37% identity, 90% coverage

HGT12 potential sugar sensor or transporter from Candida albicans (see 4 papers)
XP_720385 Hgt12p from Candida albicans SC5314
Q8J2J7 Putative glucose sensor protein from Candida albicans
36% identity, 89% coverage

AFUA_2G14590, Afu2g14590 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
35% identity, 89% coverage

PDIP_03090 MFS monosaccharide transporter, putative from Penicillium digitatum
36% identity, 89% coverage

NCU04963 high-affinity glucose transporter from Neurospora crassa OR74A
Q7S3Q4 High-affinity glucose transporter from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
37% identity, 86% coverage

XP_449525 hypothetical protein from Candida glabrata CBS 138
35% identity, 91% coverage

Q6CCJ1 YALI0C08943p from Yarrowia lipolytica (strain CLIB 122 / E 150)
36% identity, 83% coverage

XP_006966515 uncharacterized protein from Trichoderma reesei QM6a
G0RN44 Predicted protein from Hypocrea jecorina (strain QM6a)
35% identity, 89% coverage

An15g03940, XP_001396930 uncharacterized protein from Aspergillus niger
35% identity, 88% coverage

SS1G_05456 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
34% identity, 89% coverage

Pc12g02080 uncharacterized protein from Penicillium rubens
36% identity, 86% coverage

SS1G_06023 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
35% identity, 86% coverage

Q6BTD8 DEHA2D01474p from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
33% identity, 91% coverage

CNAG_03438 hexose transporter from Cryptococcus neoformans var. grubii H99
31% identity, 88% coverage

ECDD_ASPRU / K0E3U9 Major facilitator-type transporter ecdD from Aspergillus rugulosus (Emericella rugulosa) (see paper)
34% identity, 89% coverage

K9H0P1 MFS monosaccharide transporter, putative from Penicillium digitatum (strain Pd1 / CECT 20795)
35% identity, 86% coverage

NCU08180 high-affinity glucose transporter from Neurospora crassa OR74A
35% identity, 76% coverage

XP_042994564 uncharacterized protein from Ustilaginoidea virens
34% identity, 84% coverage

CNM02570 receptor from Cryptococcus neoformans var. neoformans JEC21
33% identity, 86% coverage

FGSG_02641 hypothetical protein from Fusarium graminearum PH-1
33% identity, 89% coverage

CNG01480 hexose transport-related protein from Cryptococcus neoformans var. neoformans JEC21
30% identity, 88% coverage

TC 2.A.1.1.117 / G4N740 Glucose transporter Rco-3 or MoST1. MoST1 plays a specific role in conidiation and mycelial melanization which is not shared by other hexose transporter family members in M. oryzae from Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
XP_003716272 glucose transporter rco-3 from Pyricularia oryzae 70-15
35% identity, 89% coverage

Q6CCU6 YALI0C06424p from Yarrowia lipolytica (strain CLIB 122 / E 150)
35% identity, 89% coverage

AO090003001556 No description from Aspergillus oryzae RIB40
35% identity, 89% coverage

METBIDRAFT_79721 general substrate transporter from Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993
36% identity, 87% coverage

CNBG_9639 uncharacterized protein from Cryptococcus deuterogattii R265
33% identity, 86% coverage

Pc21g21590 uncharacterized protein from Penicillium rubens
34% identity, 89% coverage

AFUA_4G00800, Afu4g00800 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
36% identity, 79% coverage

XP_042998199 uncharacterized protein from Ustilaginoidea virens
34% identity, 86% coverage

VDAG_02979 high-affinity glucose transporter RGT2 from Verticillium dahliae VdLs.17
34% identity, 88% coverage

ATEG_07144 uncharacterized protein from Aspergillus terreus NIH2624
33% identity, 87% coverage

NCU02582, XP_965713 RCO3 from Neurospora crassa OR74A
33% identity, 82% coverage

HPODL_03366 High-affinity glucose transporter SNF3 from Ogataea parapolymorpha DL-1
34% identity, 84% coverage

NCU04537 monosaccharide transporter from Neurospora crassa OR74A
34% identity, 87% coverage

A2R055 Contig An12c0230, genomic contig from Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
An12g07450 uncharacterized protein from Aspergillus niger
34% identity, 84% coverage

TC 2.A.1.1.57 / Q8J0V1 High affinity (15 μM) glucose (monosaccharides including xylose):H+ symporter, MstA from Aspergillus niger
34% identity, 84% coverage

FVEG_01638 hypothetical protein from Fusarium verticillioides 7600
32% identity, 92% coverage

Q5AYG1 Major facilitator superfamily (MFS) profile domain-containing protein from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
34% identity, 84% coverage

VDAG_00974 low-affinity glucose transporter HXT3 from Verticillium dahliae VdLs.17
34% identity, 82% coverage

AFUA_6G03060, Afu6g03060 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
35% identity, 84% coverage

PGTG_18584 uncharacterized protein from Puccinia graminis f. sp. tritici CRL 75-36-700-3
32% identity, 90% coverage

SS1G_08425 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
31% identity, 90% coverage

NCU06358 high affinity glucose transporter RGT2 from Neurospora crassa OR74A
32% identity, 80% coverage

CH_124126 hexose transporter 2 from Magnaporthe grisea 70-15 (see paper)
35% identity, 75% coverage

SS1G_13734 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
38% identity, 69% coverage

MAA_02398 monosaccharide transporter from Metarhizium robertsii ARSEF 23
33% identity, 88% coverage

SS1G_06620 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
32% identity, 86% coverage

PODANS_1_22840 uncharacterized protein from Podospora anserina S mat+
32% identity, 87% coverage

CNAG_04931 hypothetical protein from Cryptococcus neoformans var. grubii H99
35% identity, 72% coverage

CNAG_03772 glucose transporter from Cryptococcus neoformans var. grubii H99
30% identity, 89% coverage

CNB02680 glucose transporter from Cryptococcus neoformans var. neoformans JEC21
31% identity, 89% coverage

G0RIJ1 Predicted protein from Hypocrea jecorina (strain QM6a)
34% identity, 84% coverage

Q7S0I5 MFS monosaccharide transporter from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
NCU10021 MFS monosaccharide transporter from Neurospora crassa OR74A
33% identity, 84% coverage

PODANS_5_480 uncharacterized protein from Podospora anserina S mat+
33% identity, 85% coverage

XP_042994317 uncharacterized protein from Ustilaginoidea virens
32% identity, 81% coverage

CNBG_0170 glucose transporter from Cryptococcus deuterogattii R265
31% identity, 80% coverage

XP_455315 hypothetical protein from Kluyveromyces lactis NRRL Y-1140
29% identity, 67% coverage

TC 2.A.1.1.64 / B1PM37 The hexose sensor, Hxs1 (believed to be non-transporting) from Pichia angusta (Yeast) (Hansenula polymorpha) (see paper)
29% identity, 80% coverage

CNBG_5746 galactose transporter from Cryptococcus deuterogattii R265
33% identity, 86% coverage

Q6BW54 DEHA2B14278p from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
31% identity, 63% coverage

RGT2_YEAST / Q12300 High glucose sensor RGT2; Low-affinity glucose receptor RGT2; Low-affinity transporter-like sensor RGT2; Restores glucose transport protein 2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
TC 2.A.1.1.19 / Q12300 Glucose transporter and low affinity sensor, Rgt2p (regulates glucose transport in conjunction with Snf3p). Rgt2 generates an intracellular signal in response to glucose that leads to inhibition of the Rgt1 transcriptional repressor and consequently to derepression of HXT genes encoding glucose transporters. They have unusually long C-terminal tails that bind to Mth1 and Std1, paralogous proteins that regulate the function of the Rgt1 transcription factor from Saccharomyces cerevisiae (Baker's yeast) (see 4 papers)
RGT2 / RF|NP_010143.1 high-affinity glucose transporter RGT2 from Saccharomyces cerevisiae
NP_010143, YDL138W Plasma membrane glucose receptor, highly similar to Snf3p; both Rgt2p and Snf3p serve as transmembrane glucose sensors generating an intracellular signal that induces expression of glucose transporter (HXT) genes from Saccharomyces cerevisiae
NP_010143 glucose sensor from Saccharomyces cerevisiae S288C
31% identity, 62% coverage

E6RCH7 High-affinity glucose transporter of the major facilitator superfamily, putative Hxt4p from Cryptococcus gattii serotype B (strain WM276 / ATCC MYA-4071)
32% identity, 86% coverage

An11g05280 uncharacterized protein from Aspergillus niger
30% identity, 82% coverage

SNF3_YEAST / P10870 Low glucose sensor SNF3; High-affinity glucose receptor SNF3; High-affinity transporter-like sensor SNF3; Sucrose nonfermenting protein 3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 5 papers)
TC 2.A.1.1.17 / P10870 Glucose transporter from Saccharomyces cerevisiae (see 7 papers)
NP_010087 glucose sensor from Saccharomyces cerevisiae S288C
NP_010087, YDL194W Plasma membrane glucose sensor that regulates glucose transport; has 12 predicted transmembrane segments; long cytoplasmic C-terminal tail is required for low glucose induction of hexose transporter genes HXT2 and HXT4 from Saccharomyces cerevisiae
30% identity, 56% coverage

MST8_ORYSJ / Q94EC4 Sugar transport protein MST8; Monosaccharide transporter 8; OsMST8; Sugar:proton symporter MST8 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
32% identity, 83% coverage

CNAG_05387 galactose transporter from Cryptococcus neoformans var. grubii H99
32% identity, 86% coverage

Pc22g09740 uncharacterized protein from Penicillium rubens
29% identity, 96% coverage

MAA_02403 hexose transporter from Metarhizium robertsii ARSEF 23
31% identity, 81% coverage

SNF3 glucose sensor from Candida albicans (see paper)
XP_723173 glucose sensor from Candida albicans SC5314
30% identity, 65% coverage

Q9P841 Galactose/glucose transporter (Fragment) from Candida albicans
58% identity, 30% coverage

Afu2g05190 MFS monosaccharide transporter, putative from Aspergillus fumigatus Af293
30% identity, 81% coverage

CNAG_06521 hypothetical protein from Cryptococcus neoformans var. grubii H99
32% identity, 86% coverage

XP_026623817 general substrate transporter from Aspergillus welwitschiae
31% identity, 87% coverage

SS1G_07132 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
29% identity, 84% coverage

An06g00560 uncharacterized protein from Aspergillus niger
31% identity, 87% coverage

NCU06138 quinate permease from Neurospora crassa OR74A
30% identity, 82% coverage

BBA_03013 hexose transporter from Beauveria bassiana ARSEF 2860
30% identity, 87% coverage

VDAG_08381 galactose-proton symporter from Verticillium dahliae VdLs.17
32% identity, 80% coverage

Afu1g03530 MFS sugar transporter, putative from Aspergillus fumigatus Af293
30% identity, 80% coverage

G0RRR0 Predicted protein from Hypocrea jecorina (strain QM6a)
29% identity, 79% coverage

LOC103837770 sugar transport protein 7 from Brassica rapa
31% identity, 82% coverage

MST3_ORYSJ / Q7EZD7 Sugar transport protein MST3; Monosaccharide transporter 3; OsMST3; Sugar:proton symporter MST3 from Oryza sativa subsp. japonica (Rice) (see paper)
29% identity, 86% coverage

FGSG_04700 hypothetical protein from Fusarium graminearum PH-1
32% identity, 81% coverage

CNAG_06963 sugar transporter from Cryptococcus neoformans var. grubii H99
29% identity, 88% coverage

C0PHL2 Monosaccharide transporter1 from Zea mays
29% identity, 85% coverage

LOC8155361 sugar transport protein 1 from Sorghum bicolor
28% identity, 89% coverage

Q64L87 Xylhp from Debaryomyces fabryi
31% identity, 81% coverage

LOC7486368 sugar transport protein 10 from Populus trichocarpa
30% identity, 82% coverage

TC 2.A.1.1.40 / Q64L87 The xylose facilitator, Xylhp from Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
31% identity, 80% coverage

CNC00060 sugar transporter from Cryptococcus neoformans var. neoformans JEC21
29% identity, 88% coverage

MST7_ORYSJ / Q94EC3 Sugar transport protein MST7; Monosaccharide transporter 7; OsMST7; Sugar:proton symporter MST7 from Oryza sativa subsp. japonica (Rice) (see paper)
30% identity, 86% coverage

CTRG_00558 conserved hypothetical protein from Candida tropicalis MYA-3404
30% identity, 81% coverage

M1D4R5 Hexose transporter from Solanum tuberosum
32% identity, 83% coverage

FVEG_03992 hypothetical protein from Fusarium verticillioides 7600
29% identity, 81% coverage

STP10_ARATH / Q9LT15 Sugar transport protein 10; AtSTP10; D-glucose-H(+) symport protein STP10; D-glucose-proton symporter STP10; Hexose transporter 10 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
TC 2.A.1.1.124 / Q9LT15 The high affinity sugar:H+ symporter (sugar uptake) porter of 514 aas and 12 TMSs, STP10. It transports glucose, galactose and mannose, and is therefore a hexose transporter (Rottmann et al. 2016). The 2.4 from Arabidopsis thaliana
NP_188628 Major facilitator superfamily protein from Arabidopsis thaliana
AT3G19940 sugar transporter, putative from Arabidopsis thaliana
28% identity, 87% coverage

TC 2.A.1.1.50 / Q94AZ2 The glucose/fructose:H+ symporter, STP13 (sugar transport protein 13). Expressed in vascular tissues and induced during programmed cell death from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
STP13 / RF|NP_198006.1 sugar transport protein 13 from Arabidopsis thaliana (see paper)
NP_198006 Major facilitator superfamily protein from Arabidopsis thaliana
AT5G26340 MSS1; carbohydrate transmembrane transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose symporter/ sugar:hydrogen symporter from Arabidopsis thaliana
30% identity, 91% coverage

CNAG_07641 monosaccharide transporter from Cryptococcus neoformans var. grubii H99
28% identity, 89% coverage

Afu3g00430 high-affinity glucose transporter, putative from Aspergillus fumigatus Af293
30% identity, 81% coverage

An04g10090 uncharacterized protein from Aspergillus niger
30% identity, 79% coverage

I9W82_001057 HGT1 from Candida metapsilosis
30% identity, 85% coverage

STP1_ARATH / P23586 Sugar transport protein 1; Glucose transporter; Hexose transporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
TC 2.A.1.1.60 / P23586 The major hexose transporter, Htr1 (mediates the active uptake of hexoses by sugar:H+ symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Km=20 uM for glucose) from Arabidopsis thaliana (Mouse-ear cress) (see 14 papers)
STP1 / RF|NP_172592.1 sugar transport protein 1 from Arabidopsis thaliana (see paper)
NP_172592 sugar transporter 1 from Arabidopsis thaliana
AT1G11260 STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter from Arabidopsis thaliana
29% identity, 87% coverage

CPAR2_108370 uncharacterized protein from Candida parapsilosis
30% identity, 85% coverage

SS1G_09293 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
28% identity, 91% coverage

7aaqA / Q9LT15 Sugar/h+ symporter stp10 in outward occluded conformation (see paper)
28% identity, 85% coverage

Q9ZR63 Hexose transporter from Vitis vinifera
28% identity, 89% coverage

CTRG_04615 high-affinity glucose transporter from Candida tropicalis MYA-3404
31% identity, 85% coverage

LOC100232961 hexose transporter HT2 from Vitis vinifera
31% identity, 82% coverage

NCU00988 MFS quinate transporter from Neurospora crassa OR74A
31% identity, 83% coverage

SPRG_05444 hypothetical protein from Saprolegnia parasitica CBS 223.65
31% identity, 84% coverage

NP_001268207 hexose transporter from Vitis vinifera
Q3L7K6 Hexose transporter from Vitis vinifera
31% identity, 81% coverage

XP_001385583 sugar transporter, high affinity, putative from Scheffersomyces stipitis CBS 6054
A3LY10 Sugar transporter, high affinity, putative from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
30% identity, 81% coverage

MST2_ORYSJ / Q851G4 Sugar transport protein MST2; Monosaccharide transporter 2; OsMST2; Sugar:proton symporter MST2 from Oryza sativa subsp. japonica (Rice) (see paper)
30% identity, 83% coverage

STP7_ARATH / O04249 Sugar transport protein 7; Hexose transporter 7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G02050 sugar transporter, putative from Arabidopsis thaliana
NP_192114 sugar transporter protein 7 from Arabidopsis thaliana
30% identity, 82% coverage

XP_043000182 uncharacterized protein from Ustilaginoidea virens
31% identity, 82% coverage

Sb01g016730 No description from Sorghum bicolor
28% identity, 83% coverage

LOC102620675 sugar transport protein 13 from Citrus sinensis
29% identity, 89% coverage

SS1G_06402 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
30% identity, 79% coverage

AO090001000069 No description from Aspergillus oryzae RIB40
30% identity, 83% coverage

Q41144 Sugar carrier protein C from Ricinus communis
27% identity, 89% coverage

CRIB_ASPCR / A0A1E3B0S4 MFS-type transporter criB; Echinulin biosynthesis cluster protein B from Aspergillus cristatus (Chinese Fuzhuan brick tea-fermentation fungus) (Eurotium cristatum) (see paper)
31% identity, 84% coverage

Pc16g05670 uncharacterized protein from Penicillium rubens
28% identity, 86% coverage

STP9_ARATH / Q9SX48 Sugar transport protein 9; Hexose transporter 9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
stp9 / CAC69072.1 STP9 protein from Arabidopsis thaliana (see paper)
AT1G50310 STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter from Arabidopsis thaliana
28% identity, 82% coverage

hxtA high-affinity hexose transporter from Emericella nidulans (see paper)
28% identity, 84% coverage

FGSG_07587 hypothetical protein from Fusarium graminearum PH-1
29% identity, 85% coverage

SPSK_06192 sugar transporter from Sporothrix schenckii 1099-18
28% identity, 85% coverage

MST5_ORYSJ / Q6ZKF0 Sugar transport protein MST5; Monosaccharide transporter 5; OsMST5; Sugar:proton symporter MST5 from Oryza sativa subsp. japonica (Rice) (see paper)
29% identity, 85% coverage

STP11_ARATH / Q9FMX3 Sugar transport protein 11; Hexose transporter 11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
TC 2.A.1.1.61 / Q9FMX3 High affinity monosaccharide (Km = 25 µM) transporter (takes up glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose), STP11 (expressed in pollen tubes) from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
stp11 / CAC69075.1 STP11 protein from Arabidopsis thaliana (see paper)
NP_197718 sugar transporter 11 from Arabidopsis thaliana
AT5G23270 STP11 (SUGAR TRANSPORTER 11); carbohydrate transmembrane transporter/ sugar:hydrogen symporter from Arabidopsis thaliana
29% identity, 82% coverage

LOC123092952 sugar transport protein MST4 from Triticum aestivum
29% identity, 83% coverage

FVEG_10988 hypothetical protein from Fusarium verticillioides 7600
30% identity, 81% coverage

CH_124119 high-affinity glucose transporter from Magnaporthe grisea 70-15 (see paper)
27% identity, 78% coverage

LOC123098224 sugar transport protein MST4-like from Triticum aestivum
29% identity, 83% coverage

ACA1_176180 transporter, major facilitator superfamily superfamily protein from Acanthamoeba castellanii str. Neff
30% identity, 81% coverage

An08g01720 uncharacterized protein from Aspergillus niger
28% identity, 85% coverage

Q39524 H(+)/hexose cotransporter 2 from Parachlorella kessleri
31% identity, 87% coverage

XP_001382755 High-affinity Glucose Transporter (putative) from Scheffersomyces stipitis CBS 6054
XP_001382755 High-affinity Glucose Transporter (putative) from Pichia stipitis CBS 6054
30% identity, 88% coverage

MST6_ORYSJ / Q6Z401 Sugar transport protein MST6; Monosaccharide transporter 6; OsMST5; Sugar:proton symporter MST6 from Oryza sativa subsp. japonica (Rice) (see paper)
A2YML7 Major facilitator superfamily (MFS) profile domain-containing protein from Oryza sativa subsp. indica
XP_015647567 sugar transport protein MST6-like from Oryza sativa Japonica Group
29% identity, 87% coverage

QAY_NEUCR / P11636 MFS-type transporter qa-x; Quinate permease; Quinate transporter; Quinic acid degradation cluster protein y from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see 6 papers)
TC 2.A.1.1.7 / P11636 Quinate:H+ symporter from Neurospora crassa (see 2 papers)
NCU06026 quinate permease from Neurospora crassa OR74A
30% identity, 83% coverage

XP_021726328 sugar carrier protein C-like from Chenopodium quinoa
29% identity, 84% coverage

AO090010000488 No description from Aspergillus oryzae RIB40
28% identity, 79% coverage

NCU08152, XP_959563 high affinity glucose transporter from Neurospora crassa OR74A
29% identity, 86% coverage

LOC110687202 sugar transport protein 1-like from Chenopodium quinoa
29% identity, 86% coverage

QUTD_EMENI / P15325 Quinate permease; Quinate transporter from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
qutD quinate permease (quinate transporter) from Emericella nidulans (see paper)
30% identity, 85% coverage

MST4_ORYSJ / Q10PW9 Sugar transport protein MST4; Monosaccharide transporter 4; OsMST4; Sugar:proton symporter MST4 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
29% identity, 83% coverage

NCU00821 sugar transporter from Neurospora crassa OR74A
28% identity, 87% coverage

VDAG_02178 quinate permease from Verticillium dahliae VdLs.17
28% identity, 88% coverage

LOC8056880 sugar transport protein 13 from Sorghum bicolor
29% identity, 88% coverage

VDAG_02089 quinate permease from Verticillium dahliae VdLs.17
29% identity, 89% coverage

XP_001387138 sugar transporter, putative from Scheffersomyces stipitis CBS 6054
A3GHU5 Sugar transporter, putative from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
28% identity, 82% coverage

SS1G_12412 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
29% identity, 88% coverage

KLMA_10546 high-affinity glucose transporter from Kluyveromyces marxianus DMKU3-1042
29% identity, 87% coverage

LOC123085159 sugar transport protein MST4-like from Triticum aestivum
29% identity, 83% coverage

PODANS_4_9820 uncharacterized protein from Podospora anserina S mat+
27% identity, 83% coverage

MGG_13651 high-affinity glucose transporter from Pyricularia oryzae 70-15
29% identity, 86% coverage

LOC18031330 hexose carrier protein HEX6 from Citrus x clementina
28% identity, 82% coverage

NP_193879 sugar transporter protein 12 from Arabidopsis thaliana
AT4G21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter from Arabidopsis thaliana
27% identity, 86% coverage

AT1G77210 sugar transporter, putative from Arabidopsis thaliana
NP_001185417 sugar transporter 14 from Arabidopsis thaliana
NP_177845 sugar transporter 14 from Arabidopsis thaliana
31% identity, 83% coverage

SPRG_05443 hypothetical protein from Saprolegnia parasitica CBS 223.65
30% identity, 87% coverage

CD36_01840 high-affinity glucose transporter, putative from Candida dubliniensis CD36
30% identity, 85% coverage

HGT2 potential high affinity glucose transporter from Candida albicans (see paper)
29% identity, 85% coverage

CORT_0B09440 hypothetical protein from Candida orthopsilosis Co 90-125
29% identity, 85% coverage

CNK02730 sugar transporter from Cryptococcus neoformans var. neoformans JEC21
28% identity, 91% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 793,807 different protein sequences to 1,259,118 scientific articles. Searches against EuropePMC were last performed on March 13 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory