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PaperBLAST

PaperBLAST Hits for SwissProt::Q52011 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase; EC 3.7.1.8 (Pseudomonas furukawaii) (286 a.a., MTALTESSTS...)

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Found 250 similar proteins in the literature:

BPHD_PSEFK / Q52011 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase; EC 3.7.1.8 from Pseudomonas furukawaii (see paper)
bphD / BAA12881.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase from Pseudomonas oleovorans (see paper)
100% identity, 100% coverage

BPHD_PARXL / P47229 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase; EC 3.7.1.8 from Paraburkholderia xenovorans (strain LB400) (see 2 papers)
P47229 2,6-dioxo-6-phenylhexa-3-enoate hydrolase (EC 3.7.1.8) from Paraburkholderia xenovorans (see 2 papers)
BphD / CAA46911.1 2-hydroxy-6-oxo-6-phenylhexa-2, 4-dienoate hydrolase from Pseudomonas sp (see paper)
WP_011494293 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Paraburkholderia xenovorans LB400
97% identity, 100% coverage

2og1A / P47229 Crystal structure of bphd, a c-c hydrolase from burkholderia xenovorans lb400 (see paper)
97% identity, 100% coverage

BPHD_PSEPU / Q52036 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase; EC 3.7.1.8 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
96% identity, 100% coverage

B5SU85 2,6-dioxo-6-phenylhexa-3-enoate hydrolase (EC 3.7.1.8) from Dyella ginsengisoli (see paper)
89% identity, 100% coverage

Q2VLB9 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Burkholderia cepacia
81% identity, 99% coverage

BPHD_PSES1 / P17548 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase; EC 3.7.1.8 from Pseudomonas sp. (strain KKS102) (see paper)
79% identity, 99% coverage

MHPC_COMTE / Q8KZP5 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase; 2-hydroxy-6-ketonona-2,4-diene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4-diene-1,9-dioic acid 5,6-hydrolase; EC 3.7.1.14 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
78% identity, 99% coverage

G5B91_07370 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Pseudomonas nitroreducens
62% identity, 100% coverage

hbpD / O06648 2-hydroxy-6-oxo-6-phenyl-2,4-hexadienoate hydrolase [multifunctional] (EC 3.7.1.8) from Pseudomonas nitroreducens (see 2 papers)
62% identity, 100% coverage

AGH13449.1 hybrid C-C meta-cleavage hydrolase-carboxylesterase from Cycloclasticus zancles (see paper)
62% identity, 100% coverage

b0349 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase from Escherichia coli str. K-12 substr. MG1655
51% identity, 95% coverage

MhpC / b0349 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (EC 3.7.1.14) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
mhpC / P77044 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (EC 3.7.1.14) from Escherichia coli (strain K12) (see 10 papers)
MHPC_ECOLI / P77044 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase; 2-hydroxy-6-ketonona-2,4-diene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4-diene-1,9-dioic acid 5,6-hydrolase; EC 3.7.1.14 from Escherichia coli (strain K12) (see 4 papers)
P77044 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase (EC 3.7.1.14) from Escherichia coli (see 4 papers)
NP_414883 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase from Escherichia coli str. K-12 substr. MG1655
51% identity, 97% coverage

cbzF / AAX50133.1 CbzF from Pseudomonas putida (see paper)
56% identity, 87% coverage

MSMEG_6037 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase from Mycobacterium smegmatis str. MC2 155
43% identity, 96% coverage

hsaD / Q9KWQ6 4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase monomer (EC 3.7.1.17) from Rhodococcus jostii (strain RHA1) (see paper)
HSAD_RHOJR / Q9KWQ6 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase; Meta-cleavage product hydrolase; MCP hydrolase; EC 3.7.1.17 from Rhodococcus jostii (strain RHA1) (see 2 papers)
RHA1_ro04540 4,9-DSHA hydrolase from Rhodococcus sp. RHA1
RHA1_RS22130 4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase from Rhodococcus jostii RHA1
44% identity, 96% coverage

hsaD / P9WNH5 4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase monomer (EC 3.7.1.17) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
HSAD_MYCTU / P9WNH5 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; HOPDA hydrolase; Meta-cleavage product hydrolase; MCP hydrolase; EC 3.7.1.17; EC 3.7.1.8 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 4 papers)
P9WNH5 2,6-dioxo-6-phenylhexa-3-enoate hydrolase (EC 3.7.1.8) from Mycobacterium tuberculosis (see paper)
Mb3600c 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD from Mycobacterium bovis AF2122/97
Rv3569c 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD from Mycobacterium tuberculosis H37Rv
44% identity, 97% coverage

5jz9A / P9WNH5 Crystal structure of hsad bound to 3,5-dichloro-4- hydroxybenzenesulphonic acid (see paper)
44% identity, 98% coverage

bphD / BAA25612.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Rhodococcus erythropolis (see paper)
43% identity, 92% coverage

bpdF / AAB17100.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Rhodococcus sp. M5 (see paper)
45% identity, 88% coverage

BHE75_04572 alpha/beta fold hydrolase from Sphingomonas haloaromaticamans
40% identity, 98% coverage

KR76_14475 4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase from Pimelobacter simplex
38% identity, 96% coverage

A0QWD3 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
MSMEG_2900 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Mycobacterium smegmatis str. MC2 155
MSMEG_2900, MSMEI_2827 alpha/beta fold hydrolase from Mycolicibacterium smegmatis MC2 155
38% identity, 91% coverage

MAB_3810 Putative hydrolase, alpha/beta fold from Mycobacterium abscessus ATCC 19977
38% identity, 92% coverage

MAV_2517 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase from Mycobacterium avium 104
38% identity, 96% coverage

RHA1_RS28300 alpha/beta fold hydrolase from Rhodococcus jostii RHA1
RHA1_ro05797 alpha/beta-fold C-C bond hydrolase from Rhodococcus sp. RHA1
38% identity, 89% coverage

Q73ZZ9 AB hydrolase-1 domain-containing protein from Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)
36% identity, 85% coverage

CTCNB1_RS06910 alpha/beta fold hydrolase from Comamonas thiooxydans
CtCNB1_1354 alpha/beta hydrolase fold protein from Comamonas testosteroni CNB-2
36% identity, 96% coverage

F1721_00695 alpha/beta fold hydrolase from Saccharopolyspora hirsuta
35% identity, 90% coverage

P96965 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas fluorescens (see 2 papers)
cumD / BAA12150.1 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase from Pseudomonas fluorescens (see paper)
37% identity, 91% coverage

tesD / Q83VZ6 4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase (EC 3.7.1.17) from Comamonas testosteroni (see 3 papers)
36% identity, 96% coverage

1iunB / P96965 Meta-cleavage product hydrolase from pseudomonas fluorescens ip01 (cumd) s103a mutant hexagonal (see paper)
37% identity, 91% coverage

KR76_27085 alpha/beta fold hydrolase from Pimelobacter simplex
36% identity, 90% coverage

bphD / BAM76235.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Janibacter sp. TYM3221 (see paper)
36% identity, 98% coverage

MAB_4366c Putative hydrolase, alpha/beta fold from Mycobacterium abscessus ATCC 19977
36% identity, 87% coverage

Alide2_0281, Alide_0336 alpha/beta fold hydrolase from Alicycliphilus denitrificans K601
37% identity, 92% coverage

KZ686_10070 alpha/beta fold hydrolase from Cupriavidus cauae
Q1LNT5 2-hydroxymuconic semialdehyde hydrolase (HMSH)-alpha/beta hydrolase superfamily (Belongs to CMGI-2) from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
37% identity, 91% coverage

G3KFX4 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp. (see paper)
38% identity, 92% coverage

todF / P23133 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase (EC 3.7.1.25) from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see paper)
TODF_PSEP1 / P23133 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase; HOHH; EC 3.7.1.25 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) (see 2 papers)
36% identity, 91% coverage

Q8KRR8 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas fluorescens
36% identity, 88% coverage

P19076 2-hydroxymuconate semialdehyde hydrolase from Pseudomonas sp. (strain CF600)
35% identity, 92% coverage

BHE75_04577 alpha/beta fold hydrolase from Sphingomonas haloaromaticamans
34% identity, 90% coverage

NSU_pLA1124 alpha/beta fold hydrolase from Novosphingobium pentaromativorans US6-1
34% identity, 90% coverage

IM701_21000 alpha/beta fold hydrolase from Novosphingobium sp. ES2-1
33% identity, 92% coverage

cmpF / CAB06612.1 2-hydroxymuconic semialdehyde hydrolase from Sphingomonas sp (see 2 papers)
33% identity, 90% coverage

nahN / BAE92169.1 2-hydroxymuconic semialdehyde hydrolase NahN from Pseudomonas putida (see 2 papers)
35% identity, 88% coverage

bphD / Q75WN8 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.8) from Rhodococcus jostii (strain RHA1) (see 2 papers)
etbD / BAA18939.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Rhodococcus sp (see 2 papers)
33% identity, 97% coverage

AGH13447.1 hybrid C-C meta-cleavage hydrolase-carboxylesterase from Cycloclasticus zancles (see paper)
33% identity, 90% coverage

SGRAN_1584 alpha/beta fold hydrolase from Sphingopyxis granuli
31% identity, 92% coverage

plu2202 No description from Photorhabdus luminescens subsp. laumondii TTO1
34% identity, 85% coverage

xylF / P23106 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida (see paper)
XYLF_PSEPU / P23106 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida (Arthrobacter siderocapsulatus)
32% identity, 92% coverage

hppC / AAB81313.1 2-hydroxy-6-ketonona-2,4-dienoate hydrolase from Rhodococcus globerulus (see paper)
32% identity, 90% coverage

AGH13448.1 hybrid C-C meta-cleavage hydrolase-carboxylesterase from Cycloclasticus zancles (see paper)
32% identity, 85% coverage

BHE75_04587 alpha/beta fold hydrolase from Sphingomonas haloaromaticamans
30% identity, 93% coverage

EstN1 / K0IAM1 pimeloyl-[acyl-carrier protein] methyl ester esterase (EC 3.1.1.85) from Nitrososphaera gargensis (strain Ga9.2) (see paper)
31% identity, 92% coverage

Ngar_c14400 alpha/beta fold hydrolase from Candidatus Nitrososphaera gargensis Ga9.2
31% identity, 92% coverage

Swit_3055 alpha/beta hydrolase fold from Sphingomonas wittichii RW1
28% identity, 97% coverage

AXG94_01195 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Pseudomonas corrugata
32% identity, 71% coverage

4lxhA Crystal structure of the s105a mutant of a carbon-carbon bond hydrolase, dxnb2 from sphingomonas wittichii rw1, in complex with 3- cl hopda (see paper)
28% identity, 97% coverage

Ngar_c35080 alpha/beta fold hydrolase from Candidatus Nitrososphaera gargensis Ga9.2
26% identity, 92% coverage

NTE_01571 alpha/beta fold hydrolase from Candidatus Nitrososphaera evergladensis SR1
29% identity, 95% coverage

TTE0552 predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) from Thermoanaerobacter tengcongensis MB4
28% identity, 93% coverage

flnE / BAC75995.1 meta cleavage compound hydrolase from Terrabacter sp. DBF63 (see paper)
Q83ZF0 2-hydroxy-6-oxo-6-(2'-carboxyphenyl)-hexa-2,4-dienoate hydrolase from Terrabacter sp. (strain DBF63)
28% identity, 83% coverage

ELZ14_17090 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Pseudomonas brassicacearum
31% identity, 71% coverage

A0U95_29285 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Pseudomonas brassicacearum
31% identity, 71% coverage

WP_042686824 alpha/beta fold hydrolase from Candidatus Nitrosotenuis chungbukensis
26% identity, 91% coverage

YP_001188192 alpha/beta hydrolase fold from Pseudomonas mendocina ymp
27% identity, 91% coverage

6eb3B Structural and enzymatic characterization of an esterase from a metagenomic library
30% identity, 92% coverage

Q84II3 2-hydroxy-6-oxo-6-(2-aminophenyl)hexa-2,4-dienoate hydrolase (EC 3.7.1.13) from Janthinobacterium sp. J3 (see paper)
28% identity, 97% coverage

carC / Q9AQM4 2-hydroxy-6-oxo-6-(2'-aminophenyl)-hexa-2,4dienoate hydrolase monomer (EC 3.7.1.13) from Pseudomonas resinovorans (see paper)
CARC_PSERE / Q9AQM4 2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2,4-dienoic acid hydrolase; HOPDA; EC 3.7.1.13 from Pseudomonas resinovorans (see 3 papers)
Q9AQM4 2-hydroxy-6-oxo-6-(2-aminophenyl)hexa-2,4-dienoate hydrolase (EC 3.7.1.13) from Pseudomonas resinovorans (see paper)
carC / BAC41548.1 meta cleavage compound hydrolase from Pseudomonas resinovorans (see 9 papers)
28% identity, 97% coverage

Swit_4895 alpha/beta hydrolase fold from Sphingomonas wittichii RW1
28% identity, 91% coverage

cmtE / Q51980 HOMODA hydrolase from Pseudomonas putida (see 2 papers)
cmtE / AAB62292.1 HOMODA hydrolase from Pseudomonas putida (see 3 papers)
30% identity, 94% coverage

bioH / BAB39459.1 BioH from Kurthia sp. 538-KA26 (see paper)
29% identity, 91% coverage

CC2395 acetoin dehydrogenase E2 component, putative from Caulobacter crescentus CB15
28% identity, 92% coverage

PA4152 probable hydrolase from Pseudomonas aeruginosa PAO1
29% identity, 71% coverage

JV35_11985 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Pectobacterium betavasculorum
26% identity, 75% coverage

PA14_10240 putative hydrolase from Pseudomonas aeruginosa UCBPP-PA14
CIA_04250 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Pseudomonas aeruginosa PA14
29% identity, 71% coverage

PP0553, PP_0553 acetoin dehydrogenase, dihydrolipoamide acetyltransferase component from Pseudomonas putida KT2440
30% identity, 71% coverage

PA0829 probable hydrolase from Pseudomonas aeruginosa PAO1
26% identity, 88% coverage

WP_095844694 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Gibbsiella quercinecans
27% identity, 69% coverage

acoC / AAA21950.1 FMP from Cupriavidus necator (see paper)
27% identity, 68% coverage

O73957 carboxylesterase (EC 3.1.1.1) from Sulfolobus acidocaldarius (see paper)
26% identity, 84% coverage

ABHD6_MOUSE / Q8R2Y0 Monoacylglycerol lipase ABHD6; 2-arachidonoylglycerol hydrolase; Abhydrolase domain-containing protein 6; EC 3.1.1.23 from Mus musculus (Mouse) (see 4 papers)
25% identity, 78% coverage

Pden_4983 alpha/beta hydrolase fold from Paracoccus denitrificans PD1222
27% identity, 72% coverage

YP_003372868 alpha/beta hydrolase fold protein from Pirellula staleyi DSM 6068
25% identity, 88% coverage

A1S_0954 putative hydrolase from Acinetobacter baumannii ATCC 17978
37% identity, 38% coverage

Q5XI64 Monoacylglycerol lipase ABHD6 from Rattus norvegicus
NP_001007681 monoacylglycerol lipase ABHD6 from Rattus norvegicus
25% identity, 78% coverage

ABHD6_HUMAN / Q9BV23 Monoacylglycerol lipase ABHD6; 2-arachidonoylglycerol hydrolase; Abhydrolase domain-containing protein 6; EC 3.1.1.23 from Homo sapiens (Human) (see 2 papers)
NP_001307055 monoacylglycerol lipase ABHD6 from Homo sapiens
25% identity, 78% coverage

AT3G10840 hydrolase, alpha/beta fold family protein from Arabidopsis thaliana
25% identity, 54% coverage

FRAAL3408 putative hydrolase from Frankia alni ACN14a
29% identity, 88% coverage

Q9HZF5 Probable hydrolytic enzyme from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA3053 probable hydrolytic enzyme from Pseudomonas aeruginosa PAO1
31% identity, 44% coverage

1mu0A / P96084 Crystal structure of the tricorn interacting factor f1 complex with pck (see paper)
pip / GB|AAC44636.1 prolyl aminopeptidase; EC 3.4.11.5 from Thermoplasma acidophilum (see 3 papers)
P96084 Proline iminopeptidase from Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
26% identity, 84% coverage

TTE2547 predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) from Thermoanaerobacter tengcongensis MB4
27% identity, 97% coverage

F1SGJ4 Abhydrolase domain containing 6, acylglycerol lipase from Sus scrofa
25% identity, 80% coverage

SSO2262 Conserved hypothetical protein from Sulfolobus solfataricus P2
36% identity, 44% coverage

MXAN_0220 hydrolase, alpha/beta fold family from Myxococcus xanthus DK 1622
39% identity, 27% coverage

SMc04033 PUTATIVE PROLINE IMINOPEPTIDASE PROTEIN from Sinorhizobium meliloti 1021
26% identity, 86% coverage

NP_001001804 epoxide hydrolase 4 isoform 1 from Mus musculus
Q6IE26 Epoxide hydrolase 4 from Mus musculus
25% identity, 77% coverage

slr0314 bromoperoxidase from Synechocystis sp. PCC 6803
25% identity, 95% coverage

RSP_1258 putative hydrolase from Rhodobacter sphaeroides 2.4.1
25% identity, 80% coverage

WP_030890495 alpha/beta fold hydrolase from Streptomyces varsoviensis
27% identity, 92% coverage

C7JDV2 Esterase/lipase from Acetobacter pasteurianus (strain NBRC 105184 / IFO 3283-01)
24% identity, 73% coverage

APA386B_2085 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit from Acetobacter pasteurianus 386B
24% identity, 73% coverage

NP_775838 epoxide hydrolase 4 from Homo sapiens
Q8IUS5 Epoxide hydrolase 4 from Homo sapiens
24% identity, 77% coverage

CBL13_02626 alpha/beta fold hydrolase from Pseudomonas putida
25% identity, 92% coverage

oleB / Q8EG65 3-alkyl-4-acyloxetan-2-one decarboxylase (EC 4.1.1.114) from Shewanella oneidensis (strain MR-1) (see paper)
OLEB_SHEON / Q8EG65 Cis-3-alkyl-4-alkyloxetan-2-one decarboxylase; EC 4.1.1.114 from Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) (see paper)
SO1743, SO_1743 hydrolase, alpha/beta hydrolase fold family from Shewanella oneidensis MR-1
24% identity, 79% coverage

PP4540 hydrolase, alpha/beta fold family from Pseudomonas putida KT2440
25% identity, 92% coverage

estRB8 / CAE54381.1 carboxylesterase, partial from Oleispira antarctica (see paper)
estRB8 / CAE54384.1 carboxylesterase from Oleispira antarctica (see paper)
24% identity, 79% coverage

Q3B8N9 Biphenyl hydrolase-like (Serine hydrolase) from Rattus norvegicus
27% identity, 90% coverage

5h3hB Esterase (eaest) from exiguobacterium antarcticum (see paper)
25% identity, 92% coverage

O66382 Esterase2 from Acetobacter pasteurianus
24% identity, 66% coverage

MXAN_1644 putative epoxide hydrolase from Myxococcus xanthus DK 1622
26% identity, 87% coverage

WP_014479220 epoxide hydrolase EphM from Bacillus subtilis
25% identity, 94% coverage

wcw_1298 alpha/beta fold hydrolase from Waddlia chondrophila WSU 86-1044
26% identity, 90% coverage

BCAL1048 putative hydrolase from Burkholderia cenocepacia J2315
35% identity, 27% coverage

WP_024569139 alpha/beta fold hydrolase from Cupriavidus metallidurans
26% identity, 82% coverage

pydB / Q5IH18 4-formamido-2-oxobut-3-enoate deformylase from Rhizobium sp. TAL1145 (see 2 papers)
25% identity, 87% coverage

all2068 unknown protein from Nostoc sp. PCC 7120
25% identity, 85% coverage

RSPO_c00415 alpha/beta fold hydrolase from Ralstonia solanacearum Po82
24% identity, 69% coverage

NWF34_11730 alpha/beta fold hydrolase from Gordonia sp. GONU
23% identity, 89% coverage

DR0791, DR_0791 chloride peroxidase, putative from Deinococcus radiodurans R1
26% identity, 85% coverage

NP_001087143 epoxide hydrolase 2, cytoplasmic L homeolog from Xenopus laevis
Q6DCH2 Ephx2-prov protein from Xenopus laevis
26% identity, 46% coverage

DR2549 epoxide hydrolase-related protein from Deinococcus radiodurans R1
34% identity, 46% coverage

A1YV97 Lipase (Fragment) from Fervidobacterium changbaicum
27% identity, 90% coverage

BPHL_HUMAN / Q86WA6 Valacyclovir hydrolase; VACVase; Valacyclovirase; Biphenyl hydrolase-like protein; Biphenyl hydrolase-related protein; Bph-rp; Breast epithelial mucin-associated antigen; MCNAA; EC 3.1.-.- from Homo sapiens (Human) (see 2 papers)
27% identity, 97% coverage

BC4345 Lipase from Bacillus cereus ATCC 14579
25% identity, 89% coverage

SSO3115 Tricorn protease interacting factor F1 from Sulfolobus solfataricus P2
25% identity, 84% coverage

NCU02904 alpha/beta hydrolase fold protein from Neurospora crassa OR74A
27% identity, 69% coverage

LPC_0888 biotin biosynthesis protein BioH from Legionella pneumophila str. Corby
25% identity, 91% coverage

NP_001289706 valacyclovir hydrolase isoform 2 from Homo sapiens
26% identity, 98% coverage

MAB_3034 Probable hydrolase from Mycobacterium abscessus ATCC 19977
MAB_3034 alpha/beta fold hydrolase from Mycobacteroides abscessus ATCC 19977
21% identity, 78% coverage

MSMEG_4707 non-heme bromoperoxidase BPO-A2 from Mycobacterium smegmatis str. MC2 155
27% identity, 90% coverage

2ocgA / Q86WA6 Crystal structure of human valacyclovir hydrolase (see paper)
27% identity, 97% coverage

AF2336 carboxylesterase (est-3) from Archaeoglobus fulgidus DSM 4304
26% identity, 89% coverage

blr5346 blr5346 from Bradyrhizobium japonicum USDA 110
26% identity, 69% coverage

IYO_RS05655 pyrimidine utilization protein D from Pseudomonas syringae pv. actinidiae ICMP 18884
24% identity, 91% coverage

GSU3157 hydrolase, alpha/beta fold family from Geobacter sulfurreducens PCA
25% identity, 91% coverage

HVO_2702 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily) from Haloferax volcanii DS2
27% identity, 91% coverage

BCE_2449 hydrolase, alpha/beta fold family from Bacillus cereus ATCC 10987
35% identity, 39% coverage

ZP_01697334 alpha/beta hydrolase fold from Bacillus coagulans 36D1
24% identity, 91% coverage

Spro_0990 alpha/beta hydrolase fold from Serratia proteamaculans 568
25% identity, 79% coverage

ZP_01897865 putative haloalkane dehalogenase from Moritella sp. PE36
24% identity, 88% coverage

lnmJ / Q8GGP2 leinamycin polyketide synthase LnmJ from Streptomyces atroolivaceus (see 5 papers)
Q8GGP2 Polyketide synthase from Streptomyces atroolivaceus
27% identity, 3% coverage

NE2298 possible BioH, catalyzes some early step in biotin biosynthesis from Nitrosomonas europaea ATCC 19718
26% identity, 85% coverage

XP_001492725 bifunctional epoxide hydrolase 2 from Equus caballus
24% identity, 47% coverage

Bphyt_6134 alpha/beta hydrolase fold from Burkholderia phytofirmans PsJN
27% identity, 91% coverage

VIN14_02820 proline iminopeptidase-family hydrolase from Lacticaseibacillus casei
25% identity, 77% coverage

H16_A3742 alpha/beta fold hydrolase from Cupriavidus necator H16
H16_A3742 Lipase from Ralstonia eutropha H16
24% identity, 82% coverage

GRMZM2G032910 uncharacterized protein LOC100192768 from Zea mays
33% identity, 43% coverage

XCV2196 putative non-heme chloroperoxidase from Xanthomonas campestris pv. vesicatoria str. 85-10
25% identity, 91% coverage

5aljA / P34913 Ligand complex structure of soluble epoxide hydrolase (see paper)
24% identity, 50% coverage

VOW57_04040 proline iminopeptidase-family hydrolase from Lacticaseibacillus paracasei
24% identity, 80% coverage

O06734 AB hydrolase superfamily protein YisY from Bacillus subtilis (strain 168)
27% identity, 89% coverage

Q6Q2C2 Bifunctional epoxide hydrolase 2 from Sus scrofa
24% identity, 47% coverage

SMa1166 Putative hydrolase protein from Sinorhizobium meliloti 1021
26% identity, 75% coverage

BC_4774 alpha/beta fold hydrolase from Bacillus cereus ATCC 14579
BC4774 Non-heme chloroperoxidase from Bacillus cereus ATCC 14579
26% identity, 95% coverage

6i8wB / Q9KJG6 Crystal structure of a membrane phospholipase a, a novel bacterial virulence factor (see paper)
22% identity, 82% coverage

Q9KJG6 triacylglycerol lipase (EC 3.1.1.3) from Pseudomonas aeruginosa (see paper)
PA2949 probable lipase from Pseudomonas aeruginosa PAO1
22% identity, 80% coverage

Q45QT1 soluble epoxide hydrolase (EC 3.3.2.10) from Gallus gallus (see paper)
25% identity, 46% coverage

CDSM653_00572 alpha/beta hydrolase from Caldanaerobacter subterraneus subsp. pacificus DSM 12653
34% identity, 38% coverage

P29715 bromide peroxidase (EC 1.11.1.18) from Kitasatospora aureofaciens (see 2 papers)
bpoA2 / GI|150457 non-heme bromoperoxidase BPO-A2; EC 1.11.1.- from Streptomyces aureofaciens (see 4 papers)
23% identity, 96% coverage

rrnAC0572 3-oxoadipate enol-lactone hydrolase from Haloarcula marismortui ATCC 43049
29% identity, 76% coverage

cpoT / GB|AAB86626.1 non-heme chloroperoxidase from Streptomyces aureofaciens (see paper)
23% identity, 96% coverage

HYES_HUMAN / P34913 Bifunctional epoxide hydrolase 2; EC 3.3.2.10; EC 3.1.3.76 from Homo sapiens (Human) (see 12 papers)
P34913 2-lysophosphatidate phosphatase (EC 3.1.3.106); soluble epoxide hydrolase (EC 3.3.2.10) from Homo sapiens (see 47 papers)
NP_001970 bifunctional epoxide hydrolase 2 isoform 1 from Homo sapiens
24% identity, 47% coverage

O31243 microsomal epoxide hydrolase (EC 3.3.2.9) from Agrobacterium tumefaciens (see paper)
31% identity, 45% coverage

4haiA / P34913 Crystal structure of human soluble epoxide hydrolase complexed with n- cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide. (see paper)
24% identity, 47% coverage

Pcar_0351 putative hydrolase/acyltransferase from Pelobacter carbinolicus str. DSM 2380
32% identity, 42% coverage

FQ085_11270 alpha/beta fold hydrolase from Planococcus sp. ANT_H30
27% identity, 91% coverage

ZMO0053 alpha/beta hydrolase fold protein from Zymomonas mobilis subsp. mobilis ZM4
35% identity, 39% coverage

BA1019 hydrolase, alpha/beta fold family from Bacillus anthracis str. Ames
GBAA1019 hydrolase, alpha/beta fold family from Bacillus anthracis str. 'Ames Ancestor'
24% identity, 87% coverage

AT5G21950 hydrolase, alpha/beta fold family protein from Arabidopsis thaliana
25% identity, 85% coverage

A0QTM5 3-oxoadipate enol-lactonase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
MSMEG_1897 3-oxoadipate enol-lactonase from Mycobacterium smegmatis str. MC2 155
MSMEG_1897, MSMEI_1857 3-oxoadipate enol-lactonase from Mycolicibacterium smegmatis MC2 155
25% identity, 66% coverage

llmg_1737 non-heme chloride peroxidase from Lactococcus lactis subsp. cremoris MG1363
25% identity, 97% coverage

A9762_00985 alpha/beta fold hydrolase from Pandoraea sp. ISTKB
27% identity, 92% coverage

blr3321 blr3322 from Bradyrhizobium japonicum USDA 110
24% identity, 81% coverage

P24640 Lipase 3 from Moraxella sp. (strain TA144)
26% identity, 77% coverage

Bcen_4419 alpha/beta hydrolase fold from Burkholderia cenocepacia AU 1054
30% identity, 41% coverage

XP_005210358 bifunctional epoxide hydrolase 2 isoform X1 from Bos taurus
23% identity, 53% coverage

LF41_2289 alpha/beta fold hydrolase from Lysobacter dokdonensis DS-58
25% identity, 91% coverage

BCG_2728 putative hydrolase from Mycobacterium bovis BCG str. Pasteur 1173P2
Rv2715 POSSIBLE HYDROLASE from Mycobacterium tuberculosis H37Rv
21% identity, 70% coverage

F6QS88 Epoxide hydrolase 2 from Bos taurus
23% identity, 47% coverage

BPSS0899 putative hydrolase from Burkholderia pseudomallei K96243
27% identity, 86% coverage

Atu2497 hydrolase from Agrobacterium tumefaciens str. C58 (Cereon)
23% identity, 78% coverage

8hgwA / Q2MHH5 Crystal structure of mehph in complex with mbp (see paper)
21% identity, 87% coverage

sll1129 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase from Synechocystis sp. PCC 6803
25% identity, 84% coverage

ABUW_2914 alpha/beta fold hydrolase from Acinetobacter baumannii
26% identity, 72% coverage

ZMO1466 alpha/beta hydrolase fold protein from Zymomonas mobilis subsp. mobilis ZM4
25% identity, 91% coverage

TOL_0906 alpha/beta fold hydrolase from Thalassolituus oleivorans MIL-1
24% identity, 85% coverage

FN0752 Proline iminopeptidase from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
33% identity, 35% coverage

MXAN_0201 hydrolase, alpha/beta fold family from Myxococcus xanthus DK 1622
23% identity, 81% coverage

BC4904 Alpha/beta hydrolase fold protein from Bacillus cereus ATCC 14579
24% identity, 88% coverage

YP_001537995 alpha/beta hydrolase fold from Salinispora arenicola CNS205
31% identity, 49% coverage

AORI_1492 alpha/beta fold hydrolase from Amycolatopsis keratiniphila
25% identity, 92% coverage

PA3509 probable hydrolase from Pseudomonas aeruginosa PAO1
31% identity, 39% coverage

MMAR_0983 lipase/esterase LipG2 from Mycobacterium marinum M
28% identity, 83% coverage

SAPIO_CDS6465 Alpha/beta hydrolase fold family protein from Scedosporium apiospermum
26% identity, 89% coverage

ECA2972 alpha/beta fold hydrolase from Pectobacterium atrosepticum SCRI1043
22% identity, 62% coverage

A1JSF8 Pimeloyl-[acyl-carrier protein] methyl ester esterase from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
24% identity, 92% coverage

ZCP4_1673 alpha/beta fold hydrolase from Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023
25% identity, 91% coverage

thalar_03573 alpha/beta fold hydrolase from Litoreibacter arenae DSM 19593
26% identity, 63% coverage

SMa1727 putative hydrolase from Sinorhizobium meliloti 1021
23% identity, 89% coverage

PTO0988 carboxylesterase from Picrophilus torridus DSM 9790
32% identity, 40% coverage

PUV_07140 alpha/beta fold hydrolase from Parachlamydia acanthamoebae UV-7
25% identity, 90% coverage

PIP_HEYCO / P46541 Proline iminopeptidase; PIP; Prolyl aminopeptidase; PAP; EC 3.4.11.5 from Heyndrickxia coagulans (Weizmannia coagulans) (see 3 papers)
pip / GB|BAA01792.1 prolyl aminopeptidase; EC 3.4.11.5 from Bacillus coagulans (see paper)
24% identity, 89% coverage

YP_761108 putative epoxide hydrolase from Hyphomonas neptunium ATCC 15444
33% identity, 38% coverage

A3JB27 haloalkane dehalogenase (EC 3.8.1.5) from Marinobacter sp. (see paper)
31% identity, 43% coverage

SERP0273 hydrolase, alpha/beta hydrolase fold family from Staphylococcus epidermidis RP62A
24% identity, 91% coverage

CG5377 uncharacterized protein from Drosophila melanogaster
25% identity, 97% coverage

BCAM0061 putative 3-oxoadipate enol-lactonase I from Burkholderia cenocepacia J2315
29% identity, 66% coverage

F6476_32380 poly(3-hydroxyalkanoate) depolymerase from Pseudomonas umsongensis
28% identity, 80% coverage

A6G7B1 haloalkane dehalogenase (EC 3.8.1.5) from Plesiocystis pacifica (see 2 papers)
32% identity, 40% coverage

ZP_01221858 putative haloalkane dehalogenase from Photobacterium profundum 3TCK
23% identity, 86% coverage

cg0358 hydrolase or acyltransferase from Corynebacterium glutamicum ATCC 13032
35% identity, 34% coverage

ZZ6_1149 alpha/beta fold hydrolase from Zymomonas mobilis subsp. mobilis ATCC 29191
33% identity, 39% coverage

STM0332 putative hydrolase or acyltransferase from Salmonella typhimurium LT2
27% identity, 48% coverage

MMAR_2866 epoxide hydrolase EphB from Mycobacterium marinum M
33% identity, 31% coverage

Cbei_3932 alpha/beta hydrolase fold from Clostridium beijerincki NCIMB 8052
27% identity, 88% coverage

MAP0345c hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
30% identity, 43% coverage

Cbei_3997 alpha/beta hydrolase fold from Clostridium beijerincki NCIMB 8052
25% identity, 90% coverage

SEN0315 putative hydrolase or acyltransferase from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
27% identity, 48% coverage

PPTG_12738 hypothetical protein from Phytophthora nicotianae INRA-310
33% identity, 32% coverage

AT4G36530 hydrolase, alpha/beta fold family protein from Arabidopsis thaliana
26% identity, 49% coverage

SMb20216 putative epoxide hydrolase protein from Sinorhizobium meliloti 1021
32% identity, 38% coverage

PP2804 hydrolase, alpha/beta fold family from Pseudomonas putida KT2440
26% identity, 89% coverage

Cbei_3238 alpha/beta hydrolase fold from Clostridium beijerincki NCIMB 8052
26% identity, 59% coverage

FGSG_01659 hypothetical protein from Fusarium graminearum PH-1
25% identity, 74% coverage

4nvrA / Q8ZRI7 2.22 angstrom resolution crystal structure of a putative acyltransferase from salmonella enterica
30% identity, 38% coverage

AT4G02340 epoxide hydrolase, putative from Arabidopsis thaliana
30% identity, 34% coverage

MAV_0357 haloalkane dehalogenase from Mycobacterium avium 104
29% identity, 43% coverage

ABO_1197 carboxylic ester hydrolase from Alcanivorax borkumensis SK2
22% identity, 73% coverage

SMa1809 Non-heme haloperoxidase from Sinorhizobium meliloti 1021
24% identity, 97% coverage

C2F9L5 prolyl aminopeptidase (EC 3.4.11.5) from Lacticaseibacillus paracasei subsp. paracasei (see paper)
23% identity, 82% coverage

BBD24_12800, SRX10_000249, VOW57_13235 proline iminopeptidase from Lacticaseibacillus paracasei
23% identity, 88% coverage

8pi1B / P22862 Bicyclic incypro pseudomonas fluorescens esterase (see paper)
24% identity, 92% coverage

Q8PC98 prolyl aminopeptidase (EC 3.4.11.5) from Xanthomonas campestris pv. campestris (see paper)
34% identity, 36% coverage

Daci_1886 alpha/beta hydrolase fold from Delftia acidovorans SPH-1
21% identity, 98% coverage

WP_030191810 alpha/beta fold hydrolase from Streptomyces violaceorubidus
22% identity, 92% coverage

Q9HHP4 Vng6296c from Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
25% identity, 79% coverage

8agsAAA / A0A1U9WZ52 8agsAAA
23% identity, 73% coverage

EY04_01535 poly(3-hydroxyalkanoate) depolymerase from Pseudomonas chlororaphis
27% identity, 80% coverage

WP_008342154 alpha/beta fold hydrolase from Bacillus sp. LK10
24% identity, 91% coverage

CEEH1_CAEEL / G5EBI4 Epoxide hydrolase 1; CEEH1; EC 3.3.2.10 from Caenorhabditis elegans (see paper)
28% identity, 34% coverage

Q31KV5 2-hydroxy-6-oxohepta-24-dienoate hydrolase from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
28% identity, 52% coverage

PP_5004 poly(3-hydroxyalkanoate) depolymerase from Pseudomonas putida KT2440
Q88D24 Poly(3-hydroxyalkanoate) depolymerase from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
PP5004 poly(3-hydroxyalkanoate) depolymerase from Pseudomonas putida KT2440
26% identity, 80% coverage

Rv3177 POSSIBLE PEROXIDASE (NON-HAEM PEROXIDASE) from Mycobacterium tuberculosis H37Rv
25% identity, 89% coverage

BAS2061 hydrolase, alpha/beta fold family from Bacillus anthracis str. Sterne
AW20_594 alpha/beta fold hydrolase from Bacillus anthracis str. Sterne
23% identity, 83% coverage

BA2217 hydrolase, alpha/beta fold family from Bacillus anthracis str. Ames
23% identity, 82% coverage

Avin_02370 non-heme chloroperoxidase (abhydrolase_1 family) from Azotobacter vinelandii AvOP
24% identity, 91% coverage

Q2KTB5 triacylglycerol lipase (EC 3.1.1.3) from Psychrobacter sp. (see paper)
24% identity, 85% coverage

MT3266 hydrolase, alpha/beta hydrolase fold family from Mycobacterium tuberculosis CDC1551
25% identity, 85% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 784,739 different protein sequences to 1,253,012 scientific articles. Searches against EuropePMC were last performed on November 25 2024.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory