PaperBLAST – Find papers about a protein or its homologs

 

PaperBLAST

PaperBLAST Hits for SwissProt::Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 (Pseudomonas putida (Arthrobacter siderocapsulatus)) (507 a.a., MRHPVDMPEK...)

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Find functional residues: SitesBLAST

Search for conserved domains

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Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

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Found 250 similar proteins in the literature:

MANHY_PSEPU / Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
100% identity, 100% coverage

ABUW_1948 indoleacetamide hydrolase from Acinetobacter baumannii
48% identity, 90% coverage

WP_046196360 indoleacetamide hydrolase from Burkholderia contaminans
41% identity, 92% coverage

WP_021076225 indoleacetamide hydrolase from Bradyrhizobium sp.
40% identity, 93% coverage

YP_001967410 Iah from Agrobacterium tumefaciens
38% identity, 91% coverage

tms2 / P0A2X0 indoleacetamide hydrolase (EC 3.5.1.4) from Rhizobium radiobacter (see paper)
37% identity, 91% coverage

LOC113823280 epidermal growth factor receptor-like from Penaeus vannamei
38% identity, 45% coverage

P25016 Indoleacetamide hydrolase from Agrobacterium vitis
38% identity, 91% coverage

Pchl3084_1486 amidase family protein from Pseudomonas chlororaphis subsp. aureofaciens 30-84
37% identity, 87% coverage

Bphy_7768 amidase from Burkholderia phymatum STM815
BPHY_RS38320, Bphy_7768 amidase family protein from Paraburkholderia caribensis
33% identity, 92% coverage

iaaH / P06618 indoleacetamide hydrolase (EC 3.5.1.4) from Pseudomonas savastanoi (see 3 papers)
P06618 Indoleacetamide hydrolase from Pseudomonas savastanoi
32% identity, 89% coverage

CBO3266 glutamyl-tRNA amidotransferase subunit A from Clostridium botulinum A str. ATCC 3502
31% identity, 88% coverage

Q88XP7 Glutamyl-tRNA(Gln) amidotransferase subunit A from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
29% identity, 88% coverage

RGM3321_01475 amidase family protein from Pseudomonas sp. RGM 3321
31% identity, 91% coverage

gatA / Q9RTA9 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
34% identity, 85% coverage

TTHA1797 probable amidase from Thermus thermophilus HB8
34% identity, 92% coverage

iaaH / GB|AAA17679.1 indoleacetamide hydrolase; EC 3.5.1.- from Pseudomonas syringae pv. syringae (see paper)
P52831 Indoleacetamide hydrolase from Pseudomonas syringae pv. syringae
31% identity, 91% coverage

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 92% coverage

LGG_01019 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Lacticaseibacillus rhamnosus GG
LGG_01019 aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit A (Adt) from Lactobacillus rhamnosus GG
32% identity, 91% coverage

cahA / BAC15598.1 carbaryl hydrolase from Arthrobacter sp. RC100 (see paper)
33% identity, 94% coverage

BL0403 glutamyl-tRNA amidotransferase subunit A from Bifidobacterium longum NCC2705
33% identity, 87% coverage

NMA1568 Glu-tRNA(Gln) amidotransferase subunit A from Neisseria meningitidis Z2491
28% identity, 91% coverage

NE2072 Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit from Nitrosomonas europaea ATCC 19718
33% identity, 89% coverage

NMY233_1266 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Neisseria meningitidis NM233
28% identity, 91% coverage

LSEI_1058 Asp-tRNA-Asn/Glu-tRNA-Gln amidotransferase A subunit from Lactobacillus casei ATCC 334
32% identity, 91% coverage

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
30% identity, 87% coverage

FQ085_10470 amidase family protein from Planococcus sp. ANT_H30
29% identity, 91% coverage

FN0754 Glutamyl-tRNA(Gln) amidotransferase subunit A from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
28% identity, 93% coverage

AF2329 Glu-tRNA amidotransferase, subunit A (gatA-2) from Archaeoglobus fulgidus DSM 4304
31% identity, 88% coverage

Cbei_2128 aspartyl/glutamyl-tRNA amidotransferase subunit A from Clostridium beijerincki NCIMB 8052
30% identity, 92% coverage

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
31% identity, 92% coverage

CBU_1474 glutamyl-tRNA amidotransferase subunit A from Coxiella burnetii RSA 493
31% identity, 91% coverage

GSU3381 glutamyl-tRNA(Gln) amidotransferase, A subunit from Geobacter sulfurreducens PCA
32% identity, 91% coverage

RHE_RS25710 amidase from Rhizobium etli CFN 42
30% identity, 89% coverage

CPn0003 Glu tRNA Gln Amidotransferae (A subunit) from Chlamydophila pneumoniae CWL029
CP0772 glutamyl-tRNA amidotransferase subunit A from Chlamydophila pneumoniae AR39
29% identity, 87% coverage

WD0505 glutamyl-tRNA(Gln) amidotransferase, A subunit from Wolbachia endosymbiont of Drosophila melanogaster
30% identity, 93% coverage

Bd0059 glutamyl-tRNA(Gln) amidotransferase, A subunit from Bdellovibrio bacteriovorus HD100
30% identity, 92% coverage

PSYRMG_11680 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Pseudomonas syringae UMAF0158
31% identity, 91% coverage

Q5FWT5 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Rattus norvegicus
28% identity, 87% coverage

SP_0437 aspartyl/glutamyl-tRNA amidotransferase subunit A from Streptococcus pneumoniae TIGR4
31% identity, 87% coverage

SMU_RS08345 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Streptococcus mutans UA159
28% identity, 91% coverage

SSO0957 Glutamyl-tRNA amidotransferase, subunit A (gatA-2) from Sulfolobus solfataricus P2
30% identity, 89% coverage

Q0VFI5 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Xenopus tropicalis
28% identity, 89% coverage

SSA_0570 Glutamyl-tRNA(Gln) amidotransferase subunit A, putative from Streptococcus sanguinis SK36
29% identity, 91% coverage

LIMLP_07120 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Leptospira interrogans serovar Manilae
28% identity, 87% coverage

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
NP_060762 glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Homo sapiens
30% identity, 87% coverage

FAAH_MEDTR / G7ISB0 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
30% identity, 78% coverage

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
BSU06680 aspartyl/glutamyl-tRNA amidotransferase subunit A from Bacillus subtilis subsp. subtilis str. 168
29% identity, 91% coverage

PA4483 glutamyl-tRNA amidotransferase subunit A from Pseudomonas aeruginosa PAO1
29% identity, 92% coverage

cce_1710 glutamyl-tRNA (Gln) amidotransferase subunit A from Cyanothece sp. ATCC 51142
30% identity, 89% coverage

MG_099 glutamyl-tRNA amidotransferase subunit A from Mycoplasma genitalium G37
26% identity, 90% coverage

RHE_RS09475 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Rhizobium etli CFN 42
31% identity, 93% coverage

6diiH / Q7XJJ7 Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
30% identity, 73% coverage

FAAH_ARATH / Q7XJJ7 Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana (Mouse-ear cress) (see 10 papers)
Q7XJJ7 fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana (see paper)
NP_201249 fatty acid amide hydrolase from Arabidopsis thaliana
AT5G64440 AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase from Arabidopsis thaliana
30% identity, 74% coverage

ZMO0783 aspartyl/glutamyl-tRNA amidotransferase subunit A from Zymomonas mobilis subsp. mobilis ZM4
28% identity, 94% coverage

Gmet_0075 Glutamyl-tRNA(Gln) amidotransferase A subunit from Geobacter metallireducens GS-15
30% identity, 92% coverage

Q81IN3 Glutamyl-tRNA(Gln) amidotransferase subunit A from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
30% identity, 91% coverage

Q9X0Z9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Thermotoga maritima (see paper)
TM1272 glutamyl tRNA-Gln amidotransferase, subunit A from Thermotoga maritima MSB8
30% identity, 91% coverage

PP0931 glutamyl-tRNA(Gln) amidotransferase, A subunit from Pseudomonas putida KT2440
30% identity, 91% coverage

FORC47_RS01880 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Bacillus cereus
30% identity, 91% coverage

lmo1755 glutamyl-tRNA(Gln) amidotransferase (subunit A) from Listeria monocytogenes EGD-e
31% identity, 91% coverage

1m21A / Q8RJN5 Crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin (see paper)
32% identity, 88% coverage

Q1BSL2 Glutamyl-tRNA(Gln) amidotransferase subunit A from Burkholderia orbicola (strain AU 1054)
31% identity, 91% coverage

BCAL0484 glutamyl-tRNA amidotransferase subunit A from Burkholderia cenocepacia J2315
31% identity, 91% coverage

pam / GI|19744118 peptide amidase from Stenotrophomonas maltophilia (see paper)
pam / CAC93616.1 peptide amidase from Stenotrophomonas maltophilia (see paper)
Q8RJN5 Amidase from Stenotrophomonas maltophilia
32% identity, 83% coverage

LSA1547 Glutamyl-tRNA amidotransferase, subunit A from Lactobacillus sakei subsp. sakei 23K
32% identity, 85% coverage

CAB286 glutamyl-tRNA amidotransferase subunit A from Chlamydophila abortus S26/3
29% identity, 84% coverage

Psyr_2208 Amidase from Pseudomonas syringae pv. syringae B728a
30% identity, 81% coverage

RPA3107 Glu-tRNA(Gln) amidotransferase subunit A from Rhodopseudomonas palustris CGA009
31% identity, 92% coverage

BAB2_0646 Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit from Brucella melitensis biovar Abortus 2308
30% identity, 93% coverage

NP_385418 PUTATIVE GLUTAMYL-TRNA AMIDOTRANSFERASE SUBUNIT A PROTEIN from Sinorhizobium meliloti 1021
30% identity, 92% coverage

FUT48_26015 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Pseudomonas sp. JG-B
29% identity, 91% coverage

F1QAJ4 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial from Danio rerio
27% identity, 87% coverage

MPN237 Glu-tRNA amidotransferase, subunit A (gatA) from Mycoplasma pneumoniae M129
27% identity, 79% coverage

P63488 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Staphylococcus aureus (see paper)
2dqnA / P63488 Structure of tRNA-dependent amidotransferase gatcab complexed with asn (see paper)
SAV1900 glutamyl-tRNAGln amidotransferase subunit A from Staphylococcus aureus subsp. aureus Mu50
SA1716 glutamyl-tRNAGln amidotransferase subunit A from Staphylococcus aureus subsp. aureus N315
28% identity, 89% coverage

DLJ56_RS04105 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Staphylococcus aureus
28% identity, 89% coverage

PA4342 probable amidase from Pseudomonas aeruginosa PAO1
28% identity, 90% coverage

SMc02881 PUTATIVE AMIDASE PROTEIN from Sinorhizobium meliloti 1021
31% identity, 89% coverage

P95896 amidase (EC 3.5.1.4); nitrilase (EC 3.5.5.1) from Saccharolobus solfataricus (see 3 papers)
WP_009990155 amidase from Saccharolobus solfataricus P2
SSO2122 Glutamyl-tRNA amidotransferase, subunit A (gatA-3) from Sulfolobus solfataricus P2
28% identity, 79% coverage

LOC18033993 probable amidase At4g34880 from Citrus x clementina
30% identity, 89% coverage

3kfuE / Q9LCX3 Crystal structure of the transamidosome (see paper)
31% identity, 91% coverage

gbs1712 Unknown from Streptococcus agalactiae NEM316
29% identity, 89% coverage

Q9LCX3 Glutamyl-tRNA(Gln) amidotransferase subunit A from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
31% identity, 91% coverage

SAR1992 glutamyl-tRNA amidotransferase subunit A from Staphylococcus aureus subsp. aureus MRSA252
28% identity, 89% coverage

A6QIC8 Glutamyl-tRNA(Gln) amidotransferase subunit A from Staphylococcus aureus (strain Newman)
SAUSA300_1881 Aspartyl/glutamyl-tRNA amidotransferase subunit A from Staphylococcus aureus subsp. aureus USA300_FPR3757
28% identity, 89% coverage

ST0478 396aa long hypothetical enantiomer-selective amidase from Sulfolobus tokodaii str. 7
32% identity, 80% coverage

SSO0765 Glutamyl-tRNA amidotransferase, subunit A (gatA-1) from Sulfolobus solfataricus P2
31% identity, 86% coverage

SERP1438 glutamyl-tRNA(Gln) amidotransferase, A subunit from Staphylococcus epidermidis RP62A
27% identity, 91% coverage

DVU0808 glutamyl-tRNA(Gln) amidotransferase, A subunit from Desulfovibrio vulgaris Hildenborough
31% identity, 79% coverage

PSPTO_4204 amidase family protein from Pseudomonas syringae pv. tomato str. DC3000
32% identity, 80% coverage

BC2054 Glutamyl-tRNA(Gln) amidotransferase subunit A from Bacillus cereus ATCC 14579
27% identity, 93% coverage

ACIAD0823 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A from Acinetobacter sp. ADP1
31% identity, 91% coverage

MMP1510 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A from Methanococcus maripaludis S2
31% identity, 87% coverage

PA0202 probable amidase from Pseudomonas aeruginosa PAO1
29% identity, 93% coverage

M5E2I7 Amidase from Thalassolituus oleivorans MIL-1
29% identity, 91% coverage

NP_650775 Glutamyl-tRNA amidotransferase, subunit A from Drosophila melanogaster
28% identity, 92% coverage

FQ188_11165 amidase from Rhodococcus sp. ANT_H53B
31% identity, 84% coverage

Hbut_0594 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Hyperthermus butylicus DSM 5456
33% identity, 63% coverage

A6F504 Amidase from Marinobacter algicola DG893
27% identity, 90% coverage

SAV_6697 amidase from Streptomyces avermitilis MA-4680
30% identity, 74% coverage

MSMEG_2365 glutamyl-tRNA(Gln) amidotransferase subunit A from Mycobacterium smegmatis str. MC2 155
WP_003893733 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA from Mycolicibacterium smegmatis MC2 51
29% identity, 93% coverage

BPSS2307 putative amidase from Burkholderia pseudomallei K96243
32% identity, 84% coverage

MSMEG_1088 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit from Mycobacterium smegmatis str. MC2 155
30% identity, 91% coverage

O69768 Amidase from Pseudomonas putida
29% identity, 86% coverage

Q9ALV2 allophanate hydrolase (EC 3.5.1.54) from Enterobacter cloacae (see 2 papers)
31% identity, 66% coverage

Rv3375 PROBABLE AMIDASE AMID (ACYLAMIDASE) (ACYLASE) from Mycobacterium tuberculosis H37Rv
BCG_3446 putative amidase amiD from Mycobacterium bovis BCG str. Pasteur 1173P2
27% identity, 92% coverage

G8E09_08615 amidase from Acinetobacter pittii
32% identity, 78% coverage

Rv3011c glutamyl-tRNA amidotransferase subunit A from Mycobacterium tuberculosis H37Rv
30% identity, 90% coverage

A6739_RS07555 amidase from Acinetobacter baumannii
32% identity, 78% coverage

GATA_ARATH / Q9LI77 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G25660 glutamyl-tRNA(Gln) amidotransferase, putative from Arabidopsis thaliana
28% identity, 83% coverage

HVO_1054 aspartyl-tRNA(Asn) amidotransferase subunit A from Haloferax volcanii DS2
31% identity, 79% coverage

MSMEG_3400 glutamyl-tRNA(Gln) amidotransferase subunit A from Mycobacterium smegmatis str. MC2 155
34% identity, 32% coverage

LOC101214819 probable amidase At4g34880 from Cucumis sativus
30% identity, 90% coverage

PputW619_2551 amidase from Pseudomonas putida W619
27% identity, 90% coverage

XAC4327 urea amidolyase from Xanthomonas axonopodis pv. citri str. 306
30% identity, 72% coverage

SLIV_06435 amidase family protein from Streptomyces lividans TK24
28% identity, 87% coverage

I7FF89 Amidase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
A0QRE7 Amidase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
MSMEG_1090 amidase from Mycobacterium smegmatis str. MC2 155
28% identity, 92% coverage

DDB_G0275967 amidase family protein from Dictyostelium discoideum AX4
29% identity, 63% coverage

Bdiaspc4_22345 amidase from Bradyrhizobium diazoefficiens
bll4303 bll4303 from Bradyrhizobium japonicum USDA 110
30% identity, 92% coverage

B1GY01 nitrilase (EC 3.5.5.1) from Rhodococcus erythropolis (see paper)
31% identity, 78% coverage

P22984 amidase (EC 3.5.1.4) from Rhodococcus erythropolis (see 2 papers)
Q7DKE4 amidase (EC 3.5.1.4) from Rhodococcus sp. N-771 (see paper)
amdA / AAA62721.1 enantiomer-selective amidase from Brevibacterium sp (see paper)
CAA38009.1 amidase from Rhodococcus sp (see paper)
31% identity, 79% coverage

AF_1954 amidase from Archaeoglobus fulgidus DSM 4304
28% identity, 88% coverage

SO_0888 N-carbamoylputrescine amidase from Shewanella oneidensis MR-1
25% identity, 83% coverage

3a1iA / Q7DKE4 Crystal structure of rhodococcus sp. N-771 amidase complexed with benzamide (see paper)
31% identity, 80% coverage

K3ZSH2 Amidase domain-containing protein from Setaria italica
28% identity, 91% coverage

A0A1D8PDC6 allophanate hydrolase (EC 3.5.1.54) from Candida albicans (see paper)
XP_713590 bifunctional urea carboxylase/allophanate hydrolase from Candida albicans SC5314
28% identity, 22% coverage

FAAH_ORYSJ / Q0JFH7 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Oryza sativa subsp. japonica (Rice) (see paper)
27% identity, 73% coverage

VDAG_09707 amidase from Verticillium dahliae VdLs.17
28% identity, 74% coverage

jhp0769 GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A from Helicobacter pylori J99
28% identity, 78% coverage

LOC101204792 probable amidase At4g34880 from Cucumis sativus
29% identity, 91% coverage

DUR1,2 likely multifunctional urea amidolyase from Candida albicans (see paper)
28% identity, 22% coverage

A5BL97 Amidase domain-containing protein from Vitis vinifera
28% identity, 83% coverage

B4XEY3 Amidase (Fragment) from Rhodococcus erythropolis
31% identity, 78% coverage

jpw_13420 amidase from Pseudomonas asiatica
27% identity, 90% coverage

Q6CP22 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Kluyveromyces lactis (see 3 papers)
XP_454317 uncharacterized protein from Kluyveromyces lactis
27% identity, 22% coverage

AFUA_1G14880 N-acylethanolamine amidohydrolase, putative from Aspergillus fumigatus Af293
28% identity, 74% coverage

glr0961 probable urea amidolyase from Gloeobacter violaceus PCC 7421
31% identity, 59% coverage

AFUA_5G09140 amidase, putative from Aspergillus fumigatus Af293
25% identity, 78% coverage

BCAM0538 putative amidase from Burkholderia cenocepacia J2315
37% identity, 45% coverage

DUR1,2 / P32528 urea amidolyase (EC 6.3.4.6) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
DUR1_YEAST / P32528 Urea amidolyase; EC 6.3.4.6; EC 3.5.1.54 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
P32528 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Saccharomyces cerevisiae (see 3 papers)
YBR208C Dur1,2p from Saccharomyces cerevisiae
26% identity, 24% coverage

GRMZM2G111309 amidase precursor from Zea mays
29% identity, 89% coverage

LOC107319872 fatty acid amide hydrolase-like from Coturnix japonica
28% identity, 67% coverage

FAAH2 / Q6GMR7 fatty-acid amide hydrolase 2 (EC 3.5.1.99; EC 3.5.1.60) from Homo sapiens (see 2 papers)
FAAH2_HUMAN / Q6GMR7 Fatty-acid amide hydrolase 2; Amidase domain-containing protein; Anandamide amidohydrolase 2; Oleamide hydrolase 2; EC 3.5.1.99 from Homo sapiens (Human) (see 2 papers)
B2C6G4 fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see paper)
Q6GMR7 amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens (see 2 papers)
NP_777572 fatty-acid amide hydrolase 2 isoform 1 from Homo sapiens
24% identity, 89% coverage

LOC101257218 probable amidase At4g34880 from Solanum lycopersicum
28% identity, 91% coverage

DUR1.2 / AAC41643.1 urea amidolyase from Saccharomyces cerevisiae (see paper)
26% identity, 24% coverage

ESA_01767 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
30% identity, 65% coverage

DKG71_30355 amidase from Streptomyces sp. NEAU-S7GS2
27% identity, 92% coverage

DUR1_LACKL / A5H0J2 Urea amidolyase; Pyrimidine-degrading protein 13,15; Uracil catabolism protein 3,5; EC 6.3.4.6; EC 3.5.1.54 from Lachancea kluyveri (Yeast) (Saccharomyces kluyveri) (see paper)
27% identity, 22% coverage

AT5G07360 amidase family protein from Arabidopsis thaliana
28% identity, 44% coverage

LOC107807935 amidase 1-like from Nicotiana tabacum
34% identity, 46% coverage

bll2914 bll2914 from Bradyrhizobium japonicum USDA 110
28% identity, 81% coverage

FTL_1842 Glutamyl-tRNA(Gln) amidotransferase subunit A from Francisella tularensis subsp. holarctica
25% identity, 84% coverage

PP_2932 amidase family protein from Pseudomonas putida KT2440
25% identity, 83% coverage

LOC110029361 putative amidase C869.01 from Phalaenopsis equestris
28% identity, 91% coverage

WP_018091606 amidase family protein from Streptomyces sp. FxanaC1
29% identity, 93% coverage

jpw_14270 amidase from Pseudomonas asiatica
25% identity, 83% coverage

Afu3g02470 amidase family protein from Aspergillus fumigatus Af293
32% identity, 34% coverage

HP0830 Glu-tRNA(Gln) amidotransferase, subunit A (gatA) from Helicobacter pylori 26695
P56114 Glutamyl-tRNA(Gln) amidotransferase subunit A from Helicobacter pylori (strain ATCC 700392 / 26695)
28% identity, 78% coverage

XP_004495736 amidase 1 from Cicer arietinum
28% identity, 78% coverage

Saro_3057 Amidase from Novosphingobium aromaticivorans DSM 12444
30% identity, 86% coverage

FGSG_04022 hypothetical protein from Fusarium graminearum PH-1
35% identity, 40% coverage

BMAA1320 amidase from Burkholderia mallei ATCC 23344
27% identity, 91% coverage

WP_010677135 amidase family protein from Bacillus timonensis
29% identity, 92% coverage

SHIWSC3_PJ0040 amidase from Shinella sp. WSC3-e
31% identity, 90% coverage

XCC0292 Glu-tRNAGln amidotransferase A subunit from Xanthomonas campestris pv. campestris str. ATCC 33913
29% identity, 80% coverage

AMI4G_ARATH / A0A1P8B760 Probable amidase At4g34880; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_001329257 Amidase family protein from Arabidopsis thaliana
29% identity, 95% coverage

Q8I1S6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Plasmodium falciparum (see paper)
PF3D7_0416100 glutamyl-tRNA(Gln) amidotransferase subunit A from Plasmodium falciparum 3D7
37% identity, 20% coverage

A0A509AHQ9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Plasmodium berghei (see paper)
36% identity, 27% coverage

blr3288 blr3288 from Bradyrhizobium japonicum USDA 110
30% identity, 92% coverage

EF_0737 amidase family protein from Enterococcus faecalis V583
EF0737 amidase, putative from Enterococcus faecalis V583
32% identity, 45% coverage

bll6733 bll6733 from Bradyrhizobium japonicum USDA 110
35% identity, 45% coverage

AMID_RHORH / P84650 Enantioselective amidase; EC 3.5.1.4 from Rhodococcus rhodochrous
29% identity, 79% coverage

LOC4335110 probable amidase At4g34880 from Oryza sativa Japonica Group
29% identity, 88% coverage

Slit_0081 allophanate hydrolase from Sideroxydans lithotrophicus ES-1
27% identity, 71% coverage

amdA / P27765 nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis (see paper)
P27765 Amidase from Pseudomonas chlororaphis
28% identity, 75% coverage

PVX_089895 glutamyl-tRNA(Gln) amidotransferase subunit A, putative from Plasmodium vivax
33% identity, 39% coverage

D3NY90 Amidase from Azospirillum sp. (strain B510)
27% identity, 91% coverage

AMDA_RHIRD / Q9AHE8 Urethanase; Enantioselective amidase; Ethyl carbamate-degrading amidase; EC 3.5.1.75 from Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) (see 3 papers)
25% identity, 75% coverage

AMI1 / Q9FR37 indole-3-acetamide amidohydrolase (EC 3.5.1.4) from Arabidopsis thaliana (see 5 papers)
AMI1_ARATH / Q9FR37 Amidase 1; AtAMI1; Translocon at the outer membrane of chloroplasts 64-I; AtTOC64-I; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
NP_563831 amidase 1 from Arabidopsis thaliana
AT1G08980 AMI1 (AMIDASE 1); amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds / indoleacetamide hydrolase from Arabidopsis thaliana
27% identity, 79% coverage

B0D71_26625 amidase from Pseudomonas laurylsulfativorans
32% identity, 40% coverage

NCU04092 N-acylethanolamine amidohydrolase from Neurospora crassa OR74A
26% identity, 61% coverage

I4W82_22600 amidase from Klebsiella michiganensis
28% identity, 79% coverage

RLO149_c040170 allophanate hydrolase from Roseobacter litoralis Och 149
45% identity, 27% coverage

BRA0099 amidase from Brucella suis 1330
30% identity, 79% coverage

F6B93_19200 amidase from Mycobacterium spongiae
31% identity, 79% coverage

PFLU3208 putative glutamyl-tRNA amidotransferase subunit A from Pseudomonas fluorescens SBW25
29% identity, 74% coverage

F6N111 aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp. M1-1 (see paper)
G9FKH7 amidase (EC 3.5.1.4) from Paracoccus sp. (see paper)
26% identity, 91% coverage

mhp029 glutamyl-tRNA amidotransferase subunit A from Mycoplasma hyopneumoniae 232
24% identity, 77% coverage

C0J08_14135 amidase from Marinomonas sp. CT5
27% identity, 92% coverage

MKK01_RS13030 amidase from Klebsiella variicola subsp. variicola
29% identity, 78% coverage

hydA / A0A0A1H115 4-hydroxybenzoate 1-phenylethylidene hydrazidase from Microbacterium hydrocarbonoxydans (see paper)
34% identity, 46% coverage

ECA3499 probable amidase from Erwinia carotovora subsp. atroseptica SCRI1043
29% identity, 86% coverage

A1S_1865 Glu-tRNA amidotransferase from Acinetobacter baumannii ATCC 17978
33% identity, 67% coverage

lmo0849 similar to amidases from Listeria monocytogenes EGD-e
LMRG_02272 amidase from Listeria monocytogenes 10403S
LMRG_RS04250 amidase family protein from Listeria monocytogenes 10403S
25% identity, 74% coverage

5h6sC Crystal structure of hydrazidase s179a mutant complexed with a substrate (see paper)
33% identity, 46% coverage

atzF / Q936X2 allophanate hydrolase subunit from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZF_PSESD / Q936X2 Allophanate hydrolase; EC 3.5.1.54 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X2 allophanate hydrolase (EC 3.5.1.54) from Pseudomonas sp. ADP (see paper)
26% identity, 79% coverage

XP_011529069 fatty-acid amide hydrolase 2 isoform X2 from Homo sapiens
24% identity, 86% coverage

PputUW4_03350 amidase from Pseudomonas sp. UW4
28% identity, 75% coverage

bll0246 indoleacetamide hydrolase from Bradyrhizobium japonicum USDA 110
P59385 Indoleacetamide hydrolase from Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
27% identity, 85% coverage

CNN02060 amidase from Cryptococcus neoformans var. neoformans JEC21
33% identity, 42% coverage

W6QRS4 Allophanate hydrolase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
28% identity, 70% coverage

Sb05g020350 No description from Sorghum bicolor
27% identity, 47% coverage

4gysB / Q0BRB0 Granulibacter bethesdensis allophanate hydrolase co-crystallized with malonate (see paper)
29% identity, 89% coverage

Q0BRB0 allophanate hydrolase (EC 3.5.1.54) from Granulibacter bethesdensis (see 2 papers)
29% identity, 76% coverage

CE0710 urea carboxylase from Corynebacterium efficiens YS-314
32% identity, 49% coverage

FGSG_07612 hypothetical protein from Fusarium graminearum PH-1
28% identity, 51% coverage

FQ188_09805 amidase from Rhodococcus sp. ANT_H53B
30% identity, 91% coverage

BUT78_GIBZE / I1RV18 Amidase FG08078; Butenolide biosynthesis cluster protein FG08078; EC 3.5.1.- from Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) (Wheat head blight fungus) (Fusarium graminearum) (see paper)
FGSG_08078 hypothetical protein from Fusarium graminearum PH-1
29% identity, 52% coverage

FGSG_10913 hypothetical protein from Fusarium graminearum PH-1
41% identity, 9% coverage

PA4163 amidase from Pseudomonas aeruginosa PAO1
PAKAF_00798 amidase from Pseudomonas aeruginosa PAK
33% identity, 40% coverage

UV8b_01984 uncharacterized protein from Ustilaginoidea virens
32% identity, 51% coverage

6te4A / Q9HWL8 Structural insights into pseudomonas aeruginosa type six secretion system exported effector 8: tse8 in complex with a peptide (see paper)
33% identity, 41% coverage

Krad_0905 allophanate hydrolase from Kineococcus radiotolerans SRS30216 = ATCC BAA-149
28% identity, 71% coverage

BB1142 putative amidase from Bordetella bronchiseptica RB50
42% identity, 31% coverage

BCAM0265 putative amidase from Burkholderia cenocepacia J2315
36% identity, 45% coverage

JNO42_09225 amidase from Pseudomonas putida
28% identity, 75% coverage

ACIAD1618 amidase from Acinetobacter sp. ADP1
27% identity, 75% coverage

GATA_YEAST / Q03557 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; HMG2-induced ER-remodeling protein 2; Loss of respiratory capacity protein 6; EC 6.3.5.7 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
YMR293C Lrc6p from Saccharomyces cerevisiae
NP_014021 glutamyl-tRNA(Gln) amidotransferase subunit HER2 from Saccharomyces cerevisiae S288C
27% identity, 88% coverage

BC1G_09997 hypothetical protein from Botrytis cinerea B05.10
36% identity, 39% coverage

4n0iA / Q03557 Crystal structure of s. Cerevisiae mitochondrial gatfab in complex with glutamine (see paper)
28% identity, 79% coverage

FDB95_GIBM7 / W7MLD8 Amidase FVEG_08295; Fusarium detoxification of benzoxazolinone cluster 1 protein FVEG_08295; FDB1 cluster protein FVEG_08295; EC 3.5.1.4 from Gibberella moniliformis (strain M3125 / FGSC 7600) (Maize ear and stalk rot fungus) (Fusarium verticillioides) (see 4 papers)
FVEG_08295 hypothetical protein from Fusarium verticillioides 7600
30% identity, 44% coverage

Tpau_1595 allophanate hydrolase from Tsukamurella paurometabola DSM 20162
28% identity, 74% coverage

ArtHe_01245 amidase from Arthrobacter sp. Helios
27% identity, 85% coverage

FOXG_11632 hypothetical protein from Fusarium oxysporum f. sp. lycopersici 4287
37% identity, 41% coverage

AAM_RHOER / K9NBS6 Acylamidase; EC 3.5.1.13; EC 3.5.1.14; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus) (see paper)
26% identity, 92% coverage

CMM_2824 amidase from Clavibacter michiganensis subsp. michiganensis NCPPB 382
38% identity, 36% coverage

MSMEG_2189 allophanate hydrolase from Mycobacterium smegmatis str. MC2 155
29% identity, 68% coverage

SPO2938 amidase family protein from Silicibacter pomeroyi DSS-3
33% identity, 40% coverage

RHA1_RS22310 amidase from Rhodococcus jostii RHA1
28% identity, 85% coverage

atzE / Q936X3 1-carboxybiuret hydrolase catalytic subunit (EC 3.5.1.3; EC 3.5.1.131) from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZE_PSESD / Q936X3 1-carboxybiuret hydrolase subunit AtzE; EC 3.5.1.131 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X3 1-carboxybiuret hydrolase (EC 3.5.1.131) from Pseudomonas sp. ADP (see paper)
6c6gA / Q936X3 An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme. Inhibitor bound complex. (see paper)
27% identity, 88% coverage

FVEG_12677 hypothetical protein from Fusarium verticillioides 7600
28% identity, 47% coverage

FRAAL0363 putative amidase from Frankia alni ACN14a
30% identity, 88% coverage

CNBD1400 hypothetical protein from Cryptococcus neoformans var. neoformans B-3501A
28% identity, 78% coverage

U5YQN5 Aspartyl-tRNA amidotransferase subunit A/glutamyl-tRNA(Gln) amidotransferase subunit a from Streptomyces sp. XY332
28% identity, 79% coverage

N8UB59 Amidase domain-containing protein from Acinetobacter sp. CIP 102129
25% identity, 91% coverage

An02g00190 uncharacterized protein from Aspergillus niger
33% identity, 43% coverage

Q05AM4 Fatty-acid amide hydrolase 2-B from Danio rerio
27% identity, 89% coverage

XP_003850457 uncharacterized protein from Zymoseptoria tritici IPO323
29% identity, 45% coverage

AAur_0186 allophanate hydrolase from Arthrobacter aurescens TC1
28% identity, 66% coverage

YJV7_SCHPO / O59805 Putative amidase C550.07; EC 3.5.1.4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPCC550.07 acetamidase (predicted) from Schizosaccharomyces pombe
31% identity, 42% coverage

R4SWV0 Amidase from Amycolatopsis keratiniphila
24% identity, 92% coverage

lpg2355 amidase (enantiomer selective) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
24% identity, 93% coverage

BP2039 putative amidase from Bordetella pertussis Tohama I
32% identity, 45% coverage

Rv3175 amidase from Mycobacterium tuberculosis H37Rv
34% identity, 41% coverage

OEOE_1519 Amidase family enzyme from Oenococcus oeni PSU-1
28% identity, 89% coverage

AFUA_6G05020 acetamidase from Aspergillus fumigatus Af293
24% identity, 70% coverage

OE64M_ARATH / F4KCL7 Outer envelope protein 64, mitochondrial; Mitochondrial outer membrane protein 64; mtOM64; Translocon at the outer membrane of chloroplasts 64-V; AtTOC64-V from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT5G09420, NP_196504 translocon at the outer membrane of chloroplasts 64-V from Arabidopsis thaliana
NP_196504 ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor from Arabidopsis thaliana
38% identity, 25% coverage

MT3264 amidase from Mycobacterium tuberculosis CDC1551
34% identity, 41% coverage

BJN34_07485 amidase from Cupriavidus necator
31% identity, 78% coverage

FRAAL3665 putative amidase from Frankia alni ACN14a
25% identity, 90% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory