PaperBLAST – Find papers about a protein or its homologs

 

PaperBLAST

PaperBLAST Hits for reanno::Btheta:352331 ribokinase (EC 2.7.1.15) (Bacteroides thetaiotaomicron VPI-5482) (311 a.a., MKVVVIGSSN...)

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Find functional residues: SitesBLAST

Search for conserved domains

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Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

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Fitness BLAST: loading...

Found 250 similar proteins in the literature:

BT2804 ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron VPI-5482
BT2804 ribokinase from Bacteroides thetaiotaomicron VPI-5482
BT_2804, BT_RS14220 ribokinase from Bacteroides thetaiotaomicron VPI-5482
100% identity, 100% coverage

BXY_19520 ribokinase from Bacteroides xylanisolvens XB1A
45% identity, 95% coverage

BT2803 ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron VPI-5482
BT2803 ribokinase from Bacteroides thetaiotaomicron VPI-5482
46% identity, 92% coverage

QT17_05185 ribokinase from Thermus sp. 2.9
42% identity, 97% coverage

8cqxA / A0A0B0SD75 Ribokinase from t.Sp mutant a92g
42% identity, 96% coverage

PMCN03_1092 ribokinase from Pasteurella multocida subsp. multocida str. HB03
42% identity, 96% coverage

Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N1B4
43% identity, 96% coverage

AO353_20835 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N2E3
42% identity, 96% coverage

CPE1632 ribokinase from Clostridium perfringens str. 13
41% identity, 95% coverage

PFLU_4156 ribokinase from Pseudomonas [fluorescens] SBW25
42% identity, 96% coverage

VIBHAR_06142 ribokinase from Vibrio harveyi ATCC BAA-1116
42% identity, 97% coverage

HI0505 ribokinase (rbsK) from Haemophilus influenzae Rd KW20
P44331 Ribokinase from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
40% identity, 96% coverage

A0A0H2UL04 ribokinase (EC 2.7.1.15) from Vibrio cholerae (see paper)
43% identity, 97% coverage

4xckA / A0A0H2UL04 Vibrio cholerae o395 ribokinase complexed with adp, ribose and cesium ion. (see paper)
VCA0131 ribokinase from Vibrio cholerae O1 biovar eltor str. N16961
43% identity, 97% coverage

SA0258 probable ribokinase from Staphylococcus aureus subsp. aureus N315
41% identity, 95% coverage

VPA1083 ribokinase from Vibrio parahaemolyticus RIMD 2210633
42% identity, 97% coverage

FTN_1767 ribokinase, pfkB family from Francisella tularensis subsp. novicida U112
42% identity, 97% coverage

RBSK_STAAC / A0A0H2WZY4 Ribokinase; RK; EC 2.7.1.15 from Staphylococcus aureus (strain COL) (see paper)
A0A0H2WZY4 ribokinase (EC 2.7.1.15) from Staphylococcus aureus (see paper)
SACOL0253 ribokinase from Staphylococcus aureus subsp. aureus COL
YP_498834 ribokinase from Staphylococcus aureus subsp. aureus NCTC 8325
41% identity, 95% coverage

PA1950 ribokinase from Pseudomonas aeruginosa PAO1
39% identity, 96% coverage

TM0960 ribokinase from Thermotoga maritima MSB8
42% identity, 96% coverage

PP2458 ribokinase from Pseudomonas putida KT2440
40% identity, 95% coverage

SERP2100 ribokinase from Staphylococcus epidermidis RP62A
39% identity, 95% coverage

RBSKI_FRUSL / P83534 Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis (strain ATCC 27651 / DSM 20451 / JCM 5668 / CCUG 30143 / KCTC 3205 / NCIMB 702811 / NRRL B-3934 / L-12) (Lactobacillus sanfranciscensis) (see paper)
38% identity, 56% coverage

LGG_00373 ribokinase from Lacticaseibacillus rhamnosus GG
LGG_00373 sugar kinase, ribokinase family from Lactobacillus rhamnosus GG
39% identity, 94% coverage

BCAL1661 putative ribokinase from Burkholderia cenocepacia J2315
40% identity, 95% coverage

AO356_00950 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N2C3
42% identity, 96% coverage

OEOE_RS07775 ribokinase from Oenococcus oeni PSU-1
38% identity, 95% coverage

HM1_2416 ribokinase from Heliobacterium modesticaldum Ice1
37% identity, 96% coverage

HSERO_RS11500 Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae SmR1
42% identity, 95% coverage

6znxC / A0A0B0SD75 Ribokinase from thermus species
39% identity, 96% coverage

STM14_4682 ribokinase from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
40% identity, 97% coverage

1gqtB / P0A9J6 Activation of ribokinase by monovalent cations (see paper)
40% identity, 96% coverage

BWI76_RS00290 Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis M5al
40% identity, 97% coverage

RbsK / b3752 ribokinase (EC 2.7.1.15) from Escherichia coli K-12 substr. MG1655 (see 20 papers)
rbsK / P0A9J6 ribokinase (EC 2.7.1.15) from Escherichia coli (strain K12) (see 19 papers)
RBSK_ECOLI / P0A9J6 Ribokinase; RK; EC 2.7.1.15 from Escherichia coli (strain K12) (see 5 papers)
rbsK / RF|NP_418208 ribokinase from Escherichia coli K12 (see 4 papers)
NP_418208 ribokinase from Escherichia coli str. K-12 substr. MG1655
P0A9J7 Ribokinase from Escherichia coli O157:H7
b3752 ribokinase from Escherichia coli str. K-12 substr. MG1655
Z5253 ribokinase from Escherichia coli O157:H7 EDL933
40% identity, 96% coverage

Lreu_1285 ribokinase from Lactobacillus reuteri DSM 20016
LAR_RS06895, Lreu_1285 ribokinase from Limosilactobacillus reuteri subsp. reuteri
39% identity, 95% coverage

BC0660 Ribokinase from Bacillus cereus ATCC 14579
38% identity, 96% coverage

D0R362 Ribokinase from Lactobacillus johnsonii (strain FI9785)
35% identity, 97% coverage

WP_136687548 ribokinase from Halorhabdus amylolytica
40% identity, 94% coverage

CDQ83_03295 ribokinase from Clostridium thermosuccinogenes
38% identity, 98% coverage

Lreu_0404 ribokinase from Lactobacillus reuteri DSM 20016
LAR_RS02150, LREU_RS02105, Lreu_0404 ribokinase from Limosilactobacillus reuteri subsp. reuteri
39% identity, 95% coverage

LS25_0208 ribokinase from Latilactobacillus sakei subsp. sakei LS25
38% identity, 93% coverage

AZOLI_p20643 ribokinase from Azospirillum lipoferum 4B
37% identity, 96% coverage

LSA0202 Ribokinase from Lactobacillus sakei subsp. sakei 23K
38% identity, 93% coverage

BAB2_0004 Ribokinase:Carbohydrate kinase, PfkB from Brucella melitensis biovar Abortus 2308
38% identity, 96% coverage

Q8NQR0 ribokinase (EC 2.7.1.15) from Corynebacterium glutamicum (see paper)
cg1546 putative ribokinase protein from Corynebacterium glutamicum ATCC 13032
38% identity, 94% coverage

EF2961 ribokinase from Enterococcus faecalis V583
36% identity, 95% coverage

F9ULK7 Ribokinase from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
lp_3660 ribokinase from Lactobacillus plantarum WCFS1
36% identity, 95% coverage

FOXG_13522 ribokinase from Fusarium oxysporum f. sp. lycopersici 4287
39% identity, 90% coverage

BMEII0089 RIBOKINASE from Brucella melitensis 16M
38% identity, 96% coverage

AZL_b05870 ribokinase from Azospirillum sp. B510
37% identity, 96% coverage

NCU04339 ribokinase from Neurospora crassa OR74A
36% identity, 85% coverage

RBSK_SCHPO / O60116 Ribokinase; RK; EC 2.7.1.15 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPBC16G5.02c ribokinase (predicted) from Schizosaccharomyces pombe
38% identity, 95% coverage

deoK / Q8XGW5 deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi (see 4 papers)
DEOK_SALTI / P0DX97 Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi (see paper)
DEOK_SALTY / Q7CPF5 Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
STY3989 putative carbohydrate kinase from Salmonella enterica subsp. enterica serovar Typhi str. CT18
STM3793 putative sugar kinase, ribokinase family from Salmonella typhimurium LT2
34% identity, 96% coverage

P36945 Ribokinase from Bacillus subtilis (strain 168)
37% identity, 96% coverage

AK34_5286 ribokinase from Burkholderia dolosa AU0158
35% identity, 97% coverage

WP_135662271 ribokinase from Halorhabdus rudnickae
37% identity, 96% coverage

BCAS0100 putative ribokinase from Burkholderia cenocepacia J2315
41% identity, 96% coverage

BPHYT_RS25805 deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans PsJN
36% identity, 91% coverage

SMc01103 Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti 1021
SMc01103 PROBABLE RIBOKINASE PROTEIN from Sinorhizobium meliloti 1021
36% identity, 95% coverage

FOXG_08568 ribokinase from Fusarium oxysporum f. sp. lycopersici 4287
38% identity, 92% coverage

5c41A / Q9H477 Crystal structure of human ribokinase in complex with amppcp in p21 spacegroup and with 4 protomers
36% identity, 91% coverage

DR76_RS24705 ribokinase from Escherichia coli ATCC 25922
c0331 Putative ribokinase from Escherichia coli CFT073
34% identity, 98% coverage

KP1_RS12825 ribokinase from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
37% identity, 96% coverage

AZL_b03490 ribokinase from Azospirillum sp. B510
37% identity, 95% coverage

HTIA_0439 ribokinase from Halorhabdus tiamatea SARL4B
40% identity, 94% coverage

CDR20291_0302 ribokinase from Clostridioides difficile R20291
CDR20291_0302 putative ribokinase from Clostridium difficile R20291
34% identity, 97% coverage

DIP0655 Putative ribokinase from Corynebacterium diphtheriae NCTC 13129
37% identity, 94% coverage

CD0299 putative ribokinase from Clostridium difficile 630
34% identity, 97% coverage

Bbr_1432 PfkB family carbohydrate kinase from Bifidobacterium breve UCC2003
34% identity, 46% coverage

RBSK_HUMAN / Q9H477 Ribokinase; RK; EC 2.7.1.15 from Homo sapiens (Human) (see paper)
Q9H477 ribokinase (EC 2.7.1.15) from Homo sapiens (see paper)
NP_071411 ribokinase isoform 1 from Homo sapiens
36% identity, 89% coverage

gbs0117 Unknown from Streptococcus agalactiae NEM316
34% identity, 95% coverage

SAG0118 ribokinase from Streptococcus agalactiae 2603V/R
34% identity, 95% coverage

RBSK_LEIMA / E9AD19 Ribokinase; RK; EC 2.7.1.15 from Leishmania major (see paper)
35% identity, 89% coverage

c2492 Putative carbohydrate kinase from Escherichia coli CFT073
35% identity, 74% coverage

SAK_0170 ribokinase from Streptococcus agalactiae A909
33% identity, 95% coverage

F1N8A7 Ribokinase from Gallus gallus
37% identity, 88% coverage

A4HFG6 Ribokinase from Leishmania braziliensis
34% identity, 89% coverage

6a8aA / A0A3S7X0F5 Ribokinase from leishmania donovani with atp (see paper)
34% identity, 90% coverage

KPN_01699 ribokinase from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
36% identity, 93% coverage

F9UQH2 Ribokinase from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
36% identity, 95% coverage

LINJ_27_0430 putative ribokinase from Leishmania infantum JPCM5
34% identity, 89% coverage

SSO0004 Ribokinase (rbsK-1) from Sulfolobus solfataricus P2
Q981E2 Ribokinase from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
36% identity, 96% coverage

STM1382 putative regulatory protein, deoR family from Salmonella typhimurium LT2
37% identity, 73% coverage

t3974 putative ribokinase from Salmonella enterica subsp. enterica serovar Typhi Ty2
T_RS20210 PfkB family carbohydrate kinase from Salmonella enterica subsp. enterica serovar Typhi str. Ty2
34% identity, 73% coverage

SC1403 putative regulatory protein, deoR family from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
37% identity, 73% coverage

SEET0819_01325 PfkB family carbohydrate kinase from Salmonella enterica subsp. enterica serovar Tennessee str.
34% identity, 73% coverage

AOL_s00004g627 hypothetical protein from Orbilia oligospora ATCC 24927
36% identity, 91% coverage

H281DRAFT_01116 deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila 376MFSha3.1
36% identity, 94% coverage

Q8R1Q9 Ribokinase from Mus musculus
34% identity, 88% coverage

EF1922 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein from Enterococcus faecalis V583
31% identity, 48% coverage

Bbr_1422 ribokinase from Bifidobacterium breve UCC2003
36% identity, 96% coverage

OG1RF_11586 PfkB family carbohydrate kinase from Enterococcus faecalis OG1RF
31% identity, 48% coverage

Bbr_1415 ribokinase from Bifidobacterium breve UCC2003
35% identity, 89% coverage

cg2554 ribokinase protein from Corynebacterium glutamicum ATCC 13032
35% identity, 93% coverage

BL105A_1456 ribokinase from Bifidobacterium longum
34% identity, 92% coverage

D3ZVU4 Ribokinase from Rattus norvegicus
34% identity, 88% coverage

6ilsB / A1A6H3 Structure of arabidopsis thaliana ribokinase complexed with ribose and atp (see paper)
31% identity, 95% coverage

RBSK / A1A6H3 ribokinase (EC 2.7.1.15) from Arabidopsis thaliana (see 2 papers)
RBSK_ARATH / A1A6H3 Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
A1A6H3 ribokinase (EC 2.7.1.15) from Arabidopsis thaliana (see paper)
AT1G17160 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
NP_173159 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
31% identity, 79% coverage

AS87_03725 ribokinase from Riemerella anatipestifer Yb2
30% identity, 95% coverage

GL50803_15297 Ribokinase from Giardia intestinalis
34% identity, 86% coverage

PAS_chr3_0604 Putative ribokinase from Komagataella phaffii GS115
32% identity, 86% coverage

CG13369 uncharacterized protein from Drosophila melanogaster
34% identity, 93% coverage

PFREUD_03250 ribokinase from Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
33% identity, 91% coverage

PFCIRM129_01510 ribokinase from Propionibacterium freudenreichii subsp. freudenreichii
33% identity, 91% coverage

XP_001033476 pfkB family carbohydrate kinase from Tetrahymena thermophila SB210
33% identity, 88% coverage

F2CTM5 Ribokinase from Hordeum vulgare subsp. vulgare
31% identity, 83% coverage

KLMA_10157 probable ribokinase from Kluyveromyces marxianus DMKU3-1042
31% identity, 88% coverage

I1HQ58 Ribokinase from Brachypodium distachyon
30% identity, 83% coverage

Pc12g02790 uncharacterized protein from Penicillium rubens
36% identity, 82% coverage

XAC0818 ribokinase from Xanthomonas axonopodis pv. citri str. 306
35% identity, 92% coverage

BDP_2024 Ribokinase from Bifidobacterium dentium Bd1
30% identity, 92% coverage

RBSK_YEAST / P25332 Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
YCR036W Putative ribokinase from Saccharomyces cerevisiae
30% identity, 89% coverage

Smp_044850 putative ribokinase from Schistosoma mansoni
30% identity, 83% coverage

I6G91_05165 PfkB family carbohydrate kinase from Fannyhessea vaginae
27% identity, 41% coverage

N186_RS07290 carbohydrate kinase family protein from Thermofilum adornatum
31% identity, 94% coverage

B7P0U8 Ribokinase from Ixodes scapularis
29% identity, 93% coverage

Pcal_0041 PfkB domain protein from Pyrobaculum calidifontis JCM 11548
30% identity, 96% coverage

TTX_1882 carbohydrate kinase family protein from Thermoproteus tenax Kra 1
31% identity, 96% coverage

6xk2A / J9VQ51 Crystal structure of ribokinase from cryptococcus neoformans var. Grubii serotype a in complex with adp
31% identity, 93% coverage

MT2511 ribokinase from Mycobacterium tuberculosis CDC1551
36% identity, 92% coverage

P71913 ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis (see paper)
Rv2436 RIBOKINASE RBSK from Mycobacterium tuberculosis H37Rv
NP_216952 ribokinase RbsK from Mycobacterium tuberculosis H37Rv
36% identity, 91% coverage

CNAG_02296 ATP-binding protein from Cryptococcus neoformans var. grubii H99
31% identity, 92% coverage

3go6A / P71913 Crystal structure of m. Tuberculosis ribokinase (rv2436) in complex with ribose and amp-pnp
36% identity, 91% coverage

Q42645 fructokinase (EC 2.7.1.4) from Beta vulgaris (see paper)
31% identity, 88% coverage

LOC106356810 probable fructokinase-4 from Brassica napus
29% identity, 91% coverage

LOC110718125 probable fructokinase-1 from Chenopodium quinoa
29% identity, 85% coverage

Q9M1B9 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see paper)
NP_191507 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
AT3G59480 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
28% identity, 91% coverage

CRIB_152 carbohydrate kinase from Romboutsia ilealis
28% identity, 95% coverage

XP_002268097 probable fructokinase-4 from Vitis vinifera
A5B8T3 fructokinase from Vitis vinifera
30% identity, 88% coverage

D2D2Z5 fructokinase from Gossypium hirsutum
30% identity, 88% coverage

SERP1494 fructokinase, putative from Staphylococcus epidermidis RP62A
28% identity, 93% coverage

PAE0835 sugar kinase, possible phosphofructokinase from Pyrobaculum aerophilum str. IM2
29% identity, 96% coverage

SCRK1_ORYSJ / Q0JGZ6 Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa subsp. japonica (Rice) (see paper)
27% identity, 92% coverage

AZOLI_p20179 ribokinase from Azospirillum lipoferum 4B
33% identity, 97% coverage

SCRK1_ORYSI / A2WXV8 Fructokinase-1; Fructokinase I; OsFKI; EC 2.7.1.4 from Oryza sativa subsp. indica (Rice) (see paper)
27% identity, 92% coverage

Q9SID0 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see paper)
NP_180697 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
AT2G31390 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
29% identity, 93% coverage

LOC110113984 fructokinase-1 from Dendrobium catenatum
27% identity, 92% coverage

XAC1557 fructokinase from Xanthomonas axonopodis pv. citri str. 306
27% identity, 86% coverage

LOC18046804 probable fructokinase-4 from Citrus x clementina
29% identity, 91% coverage

Q9LNE3 Probable fructokinase-2 from Arabidopsis thaliana
AT1G06030 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
NP_172093 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
29% identity, 91% coverage

O82616 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see paper)
NP_192764 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
AT4G10260 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
28% identity, 93% coverage

3ikhA / A6T989 Crystal structure of ribokinase in complex with atp and glycerol in the active site from klebsiella pneumoniae
28% identity, 96% coverage

FD720_04180 aminoimidazole riboside kinase from Photobacterium damselae subsp. damselae
26% identity, 93% coverage

K3XK17 fructokinase from Setaria italica
27% identity, 92% coverage

Smar_0007 PfkB domain protein from Staphylothermus marinus F1
27% identity, 98% coverage

BC0773 Fructokinase from Bacillus cereus ATCC 14579
28% identity, 95% coverage

I1M561 fructokinase from Glycine max
30% identity, 87% coverage

Q7XJ81 Fructokinase-2 from Solanum habrochaites
29% identity, 89% coverage

N646_3834 aminoimidazole riboside kinase from Vibrio alginolyticus NBRC 15630 = ATCC 17749
27% identity, 96% coverage

LOC104605215 probable fructokinase-1 from Nelumbo nucifera
28% identity, 92% coverage

FD719_10825, FD722_11580, H3N34_00960, HU831_00540, HU985_14395, HVV26_09230 aminoimidazole riboside kinase from Photobacterium damselae subsp. damselae
27% identity, 96% coverage

LOC108992456 probable fructokinase-4 from Juglans regia
29% identity, 89% coverage

AO090038000092 No description from Aspergillus oryzae RIB40
33% identity, 85% coverage

Q7XAE2 fructokinase from Petunia integrifolia subsp. inflata
29% identity, 89% coverage

CAC0395 2-keto-3-deoxygluconate kinase (gene kdgK) from Clostridium acetobutylicum ATCC 824
CA_C0395 sugar kinase from Clostridium acetobutylicum ATCC 824
29% identity, 93% coverage

P37829 fructokinase (EC 2.7.1.4) from Solanum tuberosum (see 2 papers)
29% identity, 92% coverage

Q9LNE4 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see paper)
AT1G06020 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
NP_172092 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
27% identity, 88% coverage

CRIB_1458 carbohydrate kinase from Romboutsia ilealis
26% identity, 93% coverage

Q42896 fructokinase (EC 2.7.1.4) from Solanum lycopersicum (see paper)
NP_001233888 fructokinase-2 from Solanum lycopersicum
28% identity, 89% coverage

A9PEZ9 fructokinase from Populus trichocarpa
29% identity, 88% coverage

B9HH42 fructokinase from Populus trichocarpa
29% identity, 91% coverage

LOC8056099 fructokinase-1 from Sorghum bicolor
27% identity, 93% coverage

3lkiB / Q87CC0 Crystal structure of fructokinase with bound atp from xylella fastidiosa
30% identity, 93% coverage

SCRK1_MAIZE / Q6XZ79 Fructokinase-1; ZmFRK1; EC 2.7.1.4 from Zea mays (Maize)
27% identity, 93% coverage

STM4066 / Q8ZKR2 aminoimidazole riboside kinase (EC 2.7.1.223) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
AIRSK_SALTY / Q8ZKR2 Aminoimidazole riboside kinase; AIRs kinase; EC 2.7.1.223 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
Q8ZKR2 aminoimidazole riboside kinase (EC 2.7.1.223) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
STM4066 putative sugar kinase, ribokinase family from Salmonella typhimurium LT2
25% identity, 96% coverage

SCRK2_ORYSI / A2YQL4 Fructokinase-2; Fructokinase II; OsFKII; EC 2.7.1.4 from Oryza sativa subsp. indica (Rice) (see paper)
SCRK2_ORYSJ / Q0J8G4 Fructokinase-2; Fructokinase II; OsFKII; EC 2.7.1.4 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
A2YQL4 fructokinase (EC 2.7.1.4) from Oryza sativa (see paper)
28% identity, 87% coverage

lpg1651 IolC/IolB transferase kinase protein from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
24% identity, 43% coverage

Tagg_0553 carbohydrate kinase family protein from Thermosphaera aggregans DSM 11486
27% identity, 98% coverage

WP_042667458 carbohydrate kinase family protein from Desulfurococcus amylolyticus Z-533
27% identity, 97% coverage

TM0296 fructokinase from Thermotoga maritima MSB8
28% identity, 97% coverage

LOC110116405 fructokinase-1 from Dendrobium catenatum
28% identity, 82% coverage

HNY42_RS00620 carbohydrate kinase from Exiguobacterium sp. Helios
27% identity, 96% coverage

Amuc_0075 PfkB domain protein from Akkermansia muciniphila ATCC BAA-835
27% identity, 75% coverage

Desfe_0717 carbohydrate kinase family protein from Desulfurococcus amylolyticus DSM 16532
27% identity, 98% coverage

LOC105035371 fructokinase-1 from Elaeis guineensis
28% identity, 91% coverage

RBAM_RS03320 carbohydrate kinase from Bacillus velezensis FZB42
27% identity, 83% coverage

cscK / GB|CAA57218.2 fructokinase; EC 2.7.1.4 from Escherichia coli (see paper)
27% identity, 95% coverage

RO3G_01375 uncharacterized protein from Rhizopus delemar RA 99-880
34% identity, 62% coverage

ECW_m2595 aminoimidazole riboside kinase from Escherichia coli W
27% identity, 95% coverage

PF1886 sugar kinase from Pyrococcus furiosus DSM 3638
27% identity, 100% coverage

B6TPJ8 Fructokinase-2 from Zea mays
28% identity, 87% coverage

SCRK2_MAIZE / Q6XZ78 Fructokinase-2; ZmFRK2; EC 2.7.1.4 from Zea mays (Maize)
27% identity, 87% coverage

WP_225760329 sugar kinase from Citrobacter sp. Marseille-Q3906
28% identity, 96% coverage

A5BUI9 fructokinase from Vitis vinifera
29% identity, 79% coverage

JV35_16100 sugar kinase from Pectobacterium betavasculorum
27% identity, 96% coverage

Cthe_0389 PfkB from Clostridium thermocellum ATCC 27405
Clo1313_1832, Cthe_0389 carbohydrate kinase from Acetivibrio thermocellus DSM 1313
26% identity, 93% coverage

CAC0424 Fructokinase from Clostridium acetobutylicum ATCC 824
CA_C0424 carbohydrate kinase from Clostridium acetobutylicum ATCC 824
26% identity, 93% coverage

B6TB29 Fructokinase-2 from Zea mays
28% identity, 87% coverage

F502_15435 carbohydrate kinase from Clostridium pasteurianum DSM 525 = ATCC 6013
25% identity, 93% coverage

Q9FLH8 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see 2 papers)
NP_199996 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
AT5G51830 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
27% identity, 87% coverage

O34768 Uncharacterized sugar kinase YdjE from Bacillus subtilis (strain 168)
26% identity, 83% coverage

7ag6A / P32143 Crystal structure of sf kinase yihv from e. Coli in complex with sulfofructose (sf), adp-mg (see paper)
29% identity, 96% coverage

SquV / b3883 6-deoxy-6-sulfofructose kinase (EC 2.7.1.184) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yihV / P32143 6-deoxy-6-sulfofructose kinase (EC 2.7.1.184) from Escherichia coli (strain K12) (see 2 papers)
SQUV_ECOLI / P32143 Sulfofructose kinase; SF kinase; EC 2.7.1.184 from Escherichia coli (strain K12) (see 2 papers)
b3883 putative kinase from Escherichia coli str. K-12 substr. MG1655
29% identity, 96% coverage

OCC_03567 carbohydrate kinase from Thermococcus litoralis DSM 5473
H3ZP68 Sugar kinase from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
Q7LYW8 Sugar kinase from Thermococcus litoralis
PF1738 sugar kinase from Pyrococcus furiosus DSM 3638
27% identity, 95% coverage

Saci_0553 carbohydrate kinase from Sulfolobus acidocaldarius DSM 639
28% identity, 94% coverage

1tz3A / Q8ZKR2 Crystal structure of aminoimidazole riboside kinase complexed with aminoimidazole riboside (see paper)
25% identity, 96% coverage

TK2029 / Q5JDG9 α-D-ribose-1-phosphate 5-kinase (ADP) (EC 2.7.1.212) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
R1PKD_THEKO / Q5JDG9 ADP-dependent ribose-1-phosphate kinase; ADP-R1P kinase; ADP:alpha-D-ribose-1-phosphate 5-phosphotransferase; Alpha-D-ribose-1-phosphate 5-kinase (ADP); EC 2.7.1.212 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
TK2029 carbohydrate/pyrimidine kinase, PfkB family from Thermococcus kodakaraensis KOD1
27% identity, 100% coverage

Hore_18220 Fructokinase from Halothermothrix orenii H 168
25% identity, 92% coverage

B6TP93 Fructokinase-2 from Zea mays
27% identity, 87% coverage

DR1525 carbohydrate kinase, PfkB family from Deinococcus radiodurans R1
DR_1525 carbohydrate kinase family protein from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
27% identity, 83% coverage

3ih0A / O59128 Crystal structure of an uncharacterized sugar kinase ph1459 from pyrococcus horikoshii in complex with amp-pnp
26% identity, 88% coverage

G1FCF5 fructokinase from Dimocarpus longan
28% identity, 88% coverage

STM4024.S putative sugar kinase from Salmonella typhimurium LT2
27% identity, 96% coverage

BMQ_1157 carbohydrate kinase family protein from Bacillus megaterium QM B1551
26% identity, 83% coverage

O04897 fructokinase (EC 2.7.1.4) from Solanum lycopersicum (see paper)
NP_001233893 fructokinase from Solanum lycopersicum
26% identity, 86% coverage

A0A0H3AER7 fructokinase (EC 2.7.1.4) from Vibrio cholerae (see paper)
28% identity, 82% coverage

ABZR86_RS11105 Fructokinase (EC 2.7.1.4) from Dyella japonica UNC79MFTsu3.2
29% identity, 83% coverage

ZMO1895 PfkB domain protein from Zymomonas mobilis subsp. mobilis ZM4
28% identity, 82% coverage

ECs2481 putative kinase from Escherichia coli O157:H7 str. Sakai
27% identity, 87% coverage

OA04_04060 aminoimidazole riboside kinase from Pectobacterium versatile
24% identity, 93% coverage

NP_001234206 fructokinase from Solanum lycopersicum
28% identity, 78% coverage

VCA0656 fructokinase from Vibrio cholerae O1 biovar eltor str. N16961
28% identity, 82% coverage

MS1233 RbsK protein from Mannheimia succiniciproducens MBEL55E
25% identity, 96% coverage

LOC108998652 probable fructokinase-7 from Juglans regia
28% identity, 86% coverage

Htur_0569 PfkB domain protein from Haloterrigena turkmenica DSM 5511
29% identity, 97% coverage

SVXHr_1094 carbohydrate kinase family protein from Halorhabdus sp. SVX81
26% identity, 93% coverage

3in1A / P77493 Crystal structure of a putative ribokinase in complex with adp from e.Coli
26% identity, 87% coverage

YdjH / b1772 L-glycero-L-galacto-octuluronate kinase from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ydjH / P77493 L-glycero-L-galacto-octuluronate kinase from Escherichia coli (strain K12) (see 2 papers)
b1772 putative kinase from Escherichia coli str. K-12 substr. MG1655
26% identity, 86% coverage

scrK / P26420 fructokinase (EC 2.7.1.4) from Klebsiella pneumoniae (see paper)
SCRK_KLEPN / P26420 Fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae (see paper)
scrK / GB|CAA43322.1 fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae (see paper)
scrK / CAA43322.1 fructokinase from Klebsiella pneumoniae (see paper)
27% identity, 95% coverage

CD1806 putative fructokinase from Clostridium difficile 630
25% identity, 93% coverage

5yggA / A0A0H3AER7 Crystal structure of fructokinase double-mutant (t261c-h108c) from vibrio cholerae o395 in fructose, adp and potassium ion bound form (see paper)
27% identity, 85% coverage

LOC110703632 probable fructokinase-6, chloroplastic from Chenopodium quinoa
26% identity, 77% coverage

Sb01g046230 No description from Sorghum bicolor
26% identity, 63% coverage

scrK / Q9ZHJ6 fructokinase (EC 2.7.1.4) from Clostridium beijerinckii (see paper)
27% identity, 94% coverage

Q9C524 fructokinase (EC 2.7.1.4) from Arabidopsis thaliana (see 2 papers)
NP_564875 pfkB-like carbohydrate kinase family protein from Arabidopsis thaliana
AT1G66430 pfkB-type carbohydrate kinase family protein from Arabidopsis thaliana
27% identity, 78% coverage

EC958_3041 aminoimidazole riboside kinase from Escherichia coli O25b:H4-ST131
25% identity, 93% coverage

orf13 PfkB family carbohydrate kinase from Gramella forsetii KT0803
25% identity, 83% coverage

Q6VWJ5 fructokinase from Solanum lycopersicum
28% identity, 78% coverage

Sde_3280 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) from Saccharophagus degradans 2-40
25% identity, 80% coverage

CH51_RS11580 carbohydrate kinase from Staphylococcus aureus
SA1845 hypothetical protein from Staphylococcus aureus subsp. aureus N315
27% identity, 84% coverage

MSMEG_4661 sugar kinase, ribokinase family protein from Mycobacterium smegmatis str. MC2 155
26% identity, 82% coverage

NP_001234396 fructokinase 3 from Solanum lycopersicum
28% identity, 77% coverage

Z3624 aminoimidazole riboside kinase from Escherichia coli O157:H7 EDL933
24% identity, 95% coverage

G7K1Y1 fructokinase from Medicago truncatula
27% identity, 78% coverage

TEU_01625 ADP-dependent ribose-1-phosphate kinase from Thermococcus eurythermalis
26% identity, 99% coverage

SERP2216 ribokinase, putative from Staphylococcus epidermidis RP62A
24% identity, 91% coverage

lmo0385 similar to B. subtilis IolC protein and to fructokinase from Listeria monocytogenes EGD-e
24% identity, 93% coverage

GAH_01843 carbohydrate kinase family protein from Geoglobus ahangari
26% identity, 91% coverage

LSA0254 Putative carbohydrate kinase from Lactobacillus sakei subsp. sakei 23K
25% identity, 94% coverage

C_RS12810 pseudouridine kinase from Escherichia coli CFT073
25% identity, 89% coverage

yeiC / Q1R9Q6 pseudouridine kinase (EC 2.7.1.83) from Escherichia coli (strain UTI89 / UPEC) (see 2 papers)
c2701 Hypothetical sugar kinase yeiC from Escherichia coli CFT073
25% identity, 79% coverage

Q9YG89 6-phosphofructokinase (EC 2.7.1.11) from Aeropyrum pernix (see 2 papers)
APE_0012 ATP-dependent 6-phosphofructokinase from Aeropyrum pernix K1
27% identity, 95% coverage

scrK / GB|AAA08602.1 fructokinase; EC 2.7.1.4 from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
scrK / CAA43323.1 fructokinase from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
P26984 Fructokinase from Salmonella typhimurium
25% identity, 93% coverage

ECs3058 putative kinase from Escherichia coli O157:H7 str. Sakai
27% identity, 89% coverage

F8D4I6 α-D-ribose-1-phosphate 5-kinase (ATP) (EC 2.7.1.239) from Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) (see 2 papers)
R1PKT_HALXS / F8D4I6 ATP-dependent ribose-1-phosphate kinase; ATP-R1P kinase; Alpha-D-ribose-1-phosphate 5-kinase (ATP); Hx-RbsK; EC 2.7.1.239 from Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) (see paper)
Halxa_1682 carbohydrate kinase family protein from Halopiger xanaduensis SH-6
29% identity, 97% coverage

NCgl0155 5-dehydro-2-deoxygluconokinase from Corynebacterium glutamicum ATCC 13032
26% identity, 86% coverage

cg0197 ribokinase family sugar kinase from Corynebacterium glutamicum ATCC 13032
26% identity, 79% coverage

AZL_b01060 5-dehydro-2-deoxygluconokinase from Azospirillum sp. B510
24% identity, 47% coverage

A0A140N873 PfkB domain protein from Escherichia coli (strain B / BL21-DE3)
26% identity, 89% coverage

Echvi_2804 Fructokinase (EC 2.7.1.4) from Echinicola vietnamensis KMM 6221, DSM 17526
26% identity, 86% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory