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PaperBLAST

PaperBLAST Hits for reanno::Koxy:BWI76_RS24235 Branched-chain-amino-acid transaminase (EC 2.6.1.42) (Klebsiella michiganensis M5al) (393 a.a., MHDRRLAARA...)

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Found 250 similar proteins in the literature:

BWI76_RS24235 Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis M5al
100% identity, 100% coverage

PAB2227 AMINOTRANSFERASE from Pyrococcus abyssi GE5
41% identity, 95% coverage

O57946 kynurenine-oxoglutarate transaminase (EC 2.6.1.7) from Pyrococcus horikoshii (see paper)
NP_142204 hypothetical protein from Pyrococcus horikoshii OT3
40% identity, 91% coverage

PH0207, WP_048053058 PLP-dependent aminotransferase family protein from Pyrococcus horikoshii OT3
40% identity, 95% coverage

3aovA / O57946 Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with plp
40% identity, 97% coverage

Ac3H11_1015 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) from Acidovorax sp. GW101-3H11
38% identity, 98% coverage

PF0121 putative aspartate aminotransferase from Pyrococcus furiosus DSM 3638
41% identity, 94% coverage

A0A060PQX5 branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp. (see paper)
41% identity, 94% coverage

ARAT1_THELN / H3ZPL1 Aromatic-amino-acid aminotransferase 1; ARAT-I; AROAT; EC 2.6.1.57 from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
OCC_04335 PLP-dependent aminotransferase family protein from Thermococcus litoralis DSM 5473
41% identity, 94% coverage

TON_1295 multiple substrate aminotransferase from Thermococcus onnurineus NA1
40% identity, 92% coverage

Q8Y2V3 Probable transcriptional regulators containing a dna-binding hth domain and an aminotransferase domain transcription regulator protein from Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
42% identity, 97% coverage

TK0186 multiple substrate aminotransferase from Thermococcus kodakaraensis KOD1
40% identity, 93% coverage

1wstA / Q9V2W5 Crystal structure of multiple substrate aminotransferase (msat) from thermococcus profundus
40% identity, 97% coverage

Ac3H11_1358 L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp. GW101-3H11
40% identity, 94% coverage

Deima_0046 PLP-dependent aminotransferase family protein from Deinococcus maricopensis DSM 21211
38% identity, 96% coverage

BTH_II0896 aminotransferase family protein from Burkholderia thailandensis E264
41% identity, 92% coverage

CD2424 putative aminotransferase from Clostridium difficile 630
36% identity, 97% coverage

Mrub_0871 putative GntR family transcriptional regulator from Meiothermus ruber DSM 1279
39% identity, 96% coverage

ST1411 400aa long hypothetical kynurenine/alpha-aminoadipate aminotransferase from Sulfolobus tokodaii str. 7
35% identity, 98% coverage

MMP0096 Aminotransferase (subgroup I) from Methanococcus maripaludis S2
32% identity, 98% coverage

LYSN_THET2 / Q72LL6 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 3 papers)
Q72LL6 2-aminoadipate transaminase (EC 2.6.1.39) from Thermus thermophilus (see paper)
2zyjA / Q72LL6 Crystal structure of lysn, alpha-aminoadipate aminotransferase (complexed with n-(5'-phosphopyridoxyl)-l-glutamate), from thermus thermophilus hb27 (see paper)
TTC0043 No description from Thermus thermophilus HB27
37% identity, 97% coverage

lysN / Q5SL82 L-2-aminoadipate aminotransferase monomer (EC 2.6.1.39) from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
TTHA0411 alpha-aminoadipate aminotransferase from Thermus thermophilus HB8
37% identity, 97% coverage

SSO0104 Aspartate aminotransferase (aspB-1) from Sulfolobus solfataricus P2
35% identity, 98% coverage

CD3664 putative amino acid aminotransferase from Clostridium difficile 630
34% identity, 98% coverage

U876_04045 PLP-dependent aminotransferase family protein from Aeromonas hydrophila NJ-35
36% identity, 99% coverage

Ta1193 aspartate aminotransferase related protein from Thermoplasma acidophilum DSM 1728
33% identity, 94% coverage

Dgeo_2084 aminotransferase, class I and II from Deinococcus geothermalis DSM 11300
39% identity, 96% coverage

OFBG_01202 PLP-dependent aminotransferase family protein from Oxalobacter formigenes OXCC13
33% identity, 96% coverage

TSC_c05810 2-aminoadipate transaminase from Thermus scotoductus SA-01
36% identity, 97% coverage

PAE2315 aminotransferase, class I from Pyrobaculum aerophilum str. IM2
34% identity, 97% coverage

LGG_02639 Helix-turn-helix (HTH) containing DNA-binding domain and MocR-like aminotransferase from Lactobacillus rhamnosus GG
LGG_02639 PLP-dependent aminotransferase family protein from Lacticaseibacillus rhamnosus GG
35% identity, 97% coverage

AMK58_05505 PLP-dependent aminotransferase family protein from Azospirillum brasilense
35% identity, 96% coverage

AZOBR_RS06555 Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense Sp245
35% identity, 96% coverage

SMc04323 PROBABLE AMINOTRANSFERASE PROTEIN from Sinorhizobium meliloti 1021
35% identity, 94% coverage

TEL01S_RS09130 PLP-dependent aminotransferase family protein from Pseudothermotoga elfii DSM 9442 = NBRC 107921
34% identity, 94% coverage

PFL_4362 aminotransferase, class I and II family protein from Pseudomonas fluorescens Pf-5
35% identity, 98% coverage

BMEI0626 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY / MULTIPLE SUBSTRATE AMINOTRANSFERASE from Brucella melitensis 16M
33% identity, 93% coverage

BAB1_1397 Aminotransferase, class I and II from Brucella melitensis biovar Abortus 2308
33% identity, 94% coverage

BSUIS_A1429 transcriptional regulator, GntR family from Brucella suis ATCC 23445
BR1378 aminotransferase, class I from Brucella suis 1330
33% identity, 94% coverage

PA1654 aminotransferase from Pseudomonas aeruginosa PAO1
37% identity, 98% coverage

W6QWV0 GntR family transcriptional regulator from Pseudomonas pseudoalcaligenes (strain CECT 5344)
36% identity, 97% coverage

RLV_5449 PLP-dependent aminotransferase family protein from Rhizobium leguminosarum bv. viciae
32% identity, 96% coverage

1vp4A / Q9X0L5 Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 a resolution
32% identity, 92% coverage

Rru_A3004 Aminotransferase, class I and II from Rhodospirillum rubrum ATCC 11170
36% identity, 94% coverage

BAS3600 transcriptional regulator, GntR family/aminotransferase, class I protein from Bacillus anthracis str. Sterne
29% identity, 79% coverage

y2375 PLP-dependent aminotransferase family protein from Yersinia pestis KIM10+
YPO1936 putative aminotransferase from Yersinia pestis CO92
YPTB1934 putative aminotransferase from Yersinia pseudotuberculosis IP 32953
31% identity, 96% coverage

YP1678 putative aminotransferase from Yersinia pestis biovar Medievalis str. 91001
NP_669682 putative aminotransferase from Yersinia pestis KIM
32% identity, 95% coverage

BBMN68_905 PLP-dependent aminotransferase family protein from Bifidobacterium longum subsp. longum BBMN68
30% identity, 66% coverage

MSMEG_2493 aminotransferase, class I and II family protein from Mycobacterium smegmatis str. MC2 155
34% identity, 93% coverage

2zc0A / Q9C4M4 Crystal structure of an archaeal alanine:glyoxylate aminotransferase (see paper)
32% identity, 96% coverage

OCC_02240 PLP-dependent aminotransferase family protein from Thermococcus litoralis DSM 5473
32% identity, 96% coverage

Q929S0 Lin2204 protein from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
34% identity, 67% coverage

YdfD/YisV / VIMSS6924547 YdfD/YisV regulator of Metabolite transport (activator/repressor) from Paenibacillus sp. JDR-2
31% identity, 78% coverage

BC3039 Transcriptional regulator, GntR family from Bacillus cereus ATCC 14579
28% identity, 70% coverage

BSU10880 putative PLP-dependent transcriptional regulator from Bacillus subtilis subsp. subtilis str. 168
29% identity, 75% coverage

GBAA2609 transcriptional regulator, GntR family from Bacillus anthracis str. 'Ames Ancestor'
29% identity, 78% coverage

ACSP50_8287 PLP-dependent aminotransferase family protein from Actinoplanes sp. SE50/110
32% identity, 93% coverage

PA2897 probable transcriptional regulator from Pseudomonas aeruginosa PAO1
Q9HZV0 Probable transcriptional regulator from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA14_26590 putative transcriptional regulator, GntR family from Pseudomonas aeruginosa UCBPP-PA14
30% identity, 75% coverage

AADAT / Q8N5Z0 Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial (EC 2.6.1.7; EC 2.6.1.39) from Homo sapiens (see 5 papers)
AADAT_HUMAN / Q8N5Z0 Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial; KAT/AadAT; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Glycine transaminase AADAT; Kynurenine aminotransferase II; Kynurenine--glyoxylate transaminase AADAT; Kynurenine--oxoglutarate aminotransferase II; Kynurenine--oxoglutarate transaminase 2; Kynurenine--oxoglutarate transaminase II; Methionine--glyoxylate transaminase AADAT; EC 2.6.1.39; EC 2.6.1.4; EC 2.6.1.63; EC 2.6.1.7; EC 2.6.1.73 from Homo sapiens (Human) (see 4 papers)
Q8N5Z0 2-aminoadipate transaminase (EC 2.6.1.39); kynurenine-oxoglutarate transaminase (EC 2.6.1.7) from Homo sapiens (see 16 papers)
NP_057312 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial isoform b from Homo sapiens
30% identity, 91% coverage

XP_006714294 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial isoform X1 from Homo sapiens
30% identity, 84% coverage

PFL_1824 transcriptional regulator, GntR family from Pseudomonas fluorescens Pf-5
31% identity, 76% coverage

LMRG_01251 hypothetical protein from Listeria monocytogenes 10403S
Q8Y5G3 Lmo2100 protein from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
lmo2100 similar to transcriptional regulator (GntR family) and to aminotransferase (MocR-like) from Listeria monocytogenes EGD-e
31% identity, 60% coverage

4gdyB / Q8N5Z0 Kynurenine aminotransferase ii inhibitors
30% identity, 91% coverage

A0AKK7 Transcriptional regulator, GntR family/aminotransferase family protein from Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)
32% identity, 60% coverage

PA14_38250 putative transcriptional regulator, GntR from Pseudomonas aeruginosa UCBPP-PA14
30% identity, 82% coverage

X276_04445 PLP-dependent aminotransferase family protein from Clostridium beijerinckii NRRL B-598
27% identity, 76% coverage

PA2032 probable transcriptional regulator from Pseudomonas aeruginosa PAO1
30% identity, 82% coverage

CDR20291_1254 GntR-family transcriptional regulator from Clostridium difficile R20291
CDR20291_1254 transcriptional regulator DdlR from Clostridioides difficile R20291
29% identity, 72% coverage

CD630DERM_RS07915, CD630_14070 transcriptional regulator DdlR from Clostridioides difficile 630
29% identity, 72% coverage

tdiD / A7XRY8 L-tryptophan:phenylpyruvate aminotransferase (EC 2.6.1.28) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (see 3 papers)
TDID_EMENI / A7XRY8 Aminotransferase tdiD; Terrequinone biosynthesis protein D; EC 2.6.1.28 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see 5 papers)
A7XRY8 tryptophan-phenylpyruvate transaminase (EC 2.6.1.28) from Aspergillus nidulans (see 2 papers)
28% identity, 88% coverage

AADAT_MOUSE / Q9WVM8 Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial; KAT/AadAT; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Glycine transaminase AADAT; Kynurenine aminotransferase II; Kynurenine--glyoxylate transaminase AADAT; Kynurenine--oxoglutarate aminotransferase II; Kynurenine--oxoglutarate transaminase 2; Kynurenine--oxoglutarate transaminase II; Methionine--glyoxylate transaminase AADAT; EC 2.6.1.39; EC 2.6.1.4; EC 2.6.1.63; EC 2.6.1.7; EC 2.6.1.73 from Mus musculus (Mouse) (see paper)
Q9WVM8 2-aminoadipate transaminase (EC 2.6.1.39); kynurenine-oxoglutarate transaminase (EC 2.6.1.7) from Mus musculus (see paper)
NP_035964 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial from Mus musculus
30% identity, 92% coverage

PSPTO_2190 transcriptional regulator, GntR family from Pseudomonas syringae pv. tomato str. DC3000
31% identity, 75% coverage

A0A0D1E3F3 tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis (see paper)
30% identity, 74% coverage

BBIF_0342 PLP-dependent aminotransferase family protein from Bifidobacterium bifidum S17
31% identity, 63% coverage

Aadat / Q64602 α-aminoadipate aminotransferase subunit (EC 2.6.1.39) from Rattus norvegicus (see paper)
AADAT_RAT / Q64602 Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial; KAT/AadAT; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Glycine transaminase AADAT; Kynurenine aminotransferase II; Kynurenine--glyoxylate transaminase AADAT; Kynurenine--oxoglutarate aminotransferase II; Kynurenine--oxoglutarate transaminase 2; Kynurenine--oxoglutarate transaminase II; Methionine--glyoxylate transaminase AADAT; EC 2.6.1.39; EC 2.6.1.4; EC 2.6.1.63; EC 2.6.1.7; EC 2.6.1.73 from Rattus norvegicus (Rat) (see paper)
Q64602 2-aminoadipate transaminase (EC 2.6.1.39); kynurenine-oxoglutarate transaminase (EC 2.6.1.7) from Rattus norvegicus (see 2 papers)
NP_058889 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial from Rattus norvegicus
30% identity, 92% coverage

XP_006509460 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial isoform X1 from Mus musculus
30% identity, 85% coverage

BCAM2329 GntR family regulatory protein from Burkholderia cenocepacia J2315
29% identity, 79% coverage

EY04_RS13280 GntR family transcriptional regulator MpaR from Pseudomonas chlororaphis
27% identity, 80% coverage

KSF55_06595 PLP-dependent aminotransferase family protein from Lactiplantibacillus pentosus
29% identity, 77% coverage

BSU05370 putative PLP-dependent transcriptional regulator from Bacillus subtilis subsp. subtilis str. 168
30% identity, 77% coverage

DVU2953 transcriptional regulator, GntR family from Desulfovibrio vulgaris Hildenborough
28% identity, 70% coverage

S5N885 Transcriptional regulator GntR family domain protein from Salmonella bongori N268-08
29% identity, 79% coverage

PA14_10530 putative transcriptional regulator, GntR family from Pseudomonas aeruginosa UCBPP-PA14
PAM18_0807 GntR family transcriptional regulator MpaR from Pseudomonas aeruginosa M18
27% identity, 80% coverage

tdiD putative aminotransferase from Emericella nidulans (see paper)
ANIA_08516 L-tryptophan:phenylpyruvate aminotransferase tdiD from Aspergillus nidulans FGSC A4
29% identity, 87% coverage

PA4132 hypothetical protein from Pseudomonas aeruginosa PAO1
27% identity, 80% coverage

YdfD/YisV / VIMSS822665 YdfD/YisV regulator of Metabolite transport (activator/repressor) from Bacillus clausii KSM-K16
27% identity, 82% coverage

EY04_RS07920 PLP-dependent aminotransferase family protein from Pseudomonas chlororaphis
27% identity, 79% coverage

LOC724239 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial from Apis mellifera
28% identity, 87% coverage

LOC100877030 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial-like from Megachile rotundata
29% identity, 87% coverage

ECs2043 putative transcriptional regulator from Escherichia coli O157:H7 str. Sakai
28% identity, 80% coverage

Q8ZPC8 GntR family regulatory protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
30% identity, 75% coverage

YdcR / b1439 fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR from Escherichia coli K-12 substr. MG1655 (see 5 papers)
ydcR / MB|P77730 uncharacterized HTH-type transcriptional regulator ydcR from Escherichia coli K12 (see 3 papers)
P77730 Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli (strain K12)
b1439 fused predicted DNA-binding transcriptional regulator/predicted amino transferase from Escherichia coli str. K-12 substr. MG1655
28% identity, 80% coverage

DVU0030 / VIMSS8508254 DVU0030 regulator of Amino acid transport from Desulfovibrio salexigens DSM 2638
28% identity, 76% coverage

W7E7N5 GntR family transcriptional regulator from Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014)
29% identity, 68% coverage

YdfD/YisV / VIMSS63013 YdfD/YisV regulator of Metabolite transport (activator/repressor) from Bacillus halodurans C-125
BH0432 transcriptional regulator (GntR family) from Bacillus halodurans C-125
28% identity, 68% coverage

BBR47_28440 probable transcriptional regulator from Brevibacillus brevis NBRC 100599
C0ZDG2 Probable transcriptional regulator from Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)
28% identity, 77% coverage

Synpcc7942_1725 regulatory protein GntR, HTH from Synechococcus elongatus PCC 7942
26% identity, 75% coverage

DVU2086 transcriptional regulator, GntR family from Desulfovibrio vulgaris Hildenborough
30% identity, 79% coverage

S4UF58 tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur (see paper)
27% identity, 79% coverage

PP_5275 transcriptional regulator, GntR family from Pseudomonas putida KT2440
26% identity, 76% coverage

8tn3A / Q643B9 Structure of s. Hygroscopicus aminotransferase mppq complexed with pyridoxamine 5'-phosphate (pmp) (see paper)
31% identity, 97% coverage

H16_A0271 transcriptional regulator, MocR family from Ralstonia eutropha H16
H16_A0271, H16_RS01325 PLP-dependent aminotransferase family protein from Cupriavidus necator H16
27% identity, 74% coverage

BCAM1280 putative GntR-family transcriptional regulator/aminotransferase from Burkholderia cenocepacia J2315
27% identity, 70% coverage

Q0B6G3 Transcriptional regulator, GntR family from Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
30% identity, 76% coverage

A0A0R2I605 HTH gntR-type domain-containing protein from Carnobacterium divergens DSM 20623
31% identity, 55% coverage

PA0268 probable transcriptional regulator from Pseudomonas aeruginosa PAO1
29% identity, 82% coverage

y1389 putative transcriptional regulator from Yersinia pestis KIM
29% identity, 69% coverage

BMD20_05445 PLP-dependent aminotransferase family protein from Burkholderia multivorans
27% identity, 68% coverage

PSYTB_16410 GntR family transcriptional regulator MpaR from Pseudomonas amygdali pv. tabaci str. ATCC 11528
25% identity, 75% coverage

A4XIB4 Putative transcriptional regulator, GntR family from Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)
29% identity, 69% coverage

B9MKZ0 Transcriptional regulator, GntR family with aminotransferase domain from Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320)
30% identity, 69% coverage

EF2426 transcriptional regulator, GntR family from Enterococcus faecalis V583
28% identity, 66% coverage

A1VQK3 Transcriptional regulator, GntR family from Polaromonas naphthalenivorans (strain CJ2)
29% identity, 75% coverage

Q221G1 Transcriptional regulator, GntR family from Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)
29% identity, 71% coverage

DVU0030 / VIMSS7454265 DVU0030 regulator of Amino acid transport from Desulfohalobium retbaense DSM 5692
25% identity, 79% coverage

GSU0018 transcriptional regulator, GntR family/aminotransferase class-I from Geobacter sulfurreducens PCA
26% identity, 76% coverage

SAR2593 putative transcriptional regulator from Staphylococcus aureus subsp. aureus MRSA252
23% identity, 77% coverage

PA5283 probable transcriptional regulator from Pseudomonas aeruginosa PAO1
26% identity, 76% coverage

A4JJX2 Transcriptional regulator, GntR family from Burkholderia vietnamiensis (strain G4 / LMG 22486)
29% identity, 78% coverage

Z5941 putative regulator from Escherichia coli O157:H7 EDL933
26% identity, 79% coverage

BSU03560 putative PLP-dependent transcriptional regulator from Bacillus subtilis subsp. subtilis str. 168
Q08792 Uncharacterized HTH-type transcriptional regulator YcxD from Bacillus subtilis (strain 168)
28% identity, 65% coverage

OG1RF_11857 PLP-dependent aminotransferase family protein from Enterococcus faecalis OG1RF
28% identity, 66% coverage

YjiR / b4340 fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR from Escherichia coli K-12 substr. MG1655 (see 5 papers)
yjiR / RF|NP_418760 uncharacterized HTH-type transcriptional regulator yjiR from Escherichia coli K12 (see 2 papers)
P39389 Uncharacterized HTH-type transcriptional regulator YjiR from Escherichia coli (strain K12)
25% identity, 80% coverage

6s8wC / Q4X0F7 Aromatic aminotransferase aroh (aro8) form aspergillus fumigatus in complex with plp (internal aldimine)
27% identity, 83% coverage

BSU05240 putative PLP-dependent transcriptional regulator from Bacillus subtilis subsp. subtilis str. 168
28% identity, 68% coverage

NORG_STAA8 / Q2G1P1 HTH-type transcriptional regulator NorG from Staphylococcus aureus (strain NCTC 8325 / PS 47) (see paper)
25% identity, 74% coverage

SOCG_01904 aromatic amino acid aminotransferase from Schizosaccharomyces octosporus yFS286
25% identity, 80% coverage

SACOL0091 transcriptional regulator, GntR family/aminotransferase, class I from Staphylococcus aureus subsp. aureus COL
SAUSA300_0110 transcriptional regulator, GntR family/aminotransferase, class I from Staphylococcus aureus subsp. aureus USA300_FPR3757
25% identity, 70% coverage

SA0104 hypothetical protein from Staphylococcus aureus subsp. aureus N315
25% identity, 74% coverage

D4HXE9 Putative GntR-family regulatory protein from Erwinia amylovora (strain CFBP1430)
29% identity, 64% coverage

PP1109 transcriptional regulator, GntR family from Pseudomonas putida KT2440
PP_1109 PLP-dependent aminotransferase family protein from Pseudomonas putida KT2440
27% identity, 78% coverage

LSA1351 Putative transcritional regulator with aminotransferase domain, GntR family from Lactobacillus sakei subsp. sakei 23K
27% identity, 70% coverage

BP0412 putative GntR-family transcriptional regulator from Bordetella pertussis Tohama I
28% identity, 78% coverage

6s8wB / Q4X0F7 Aromatic aminotransferase aroh (aro8) form aspergillus fumigatus in complex with plp (internal aldimine)
26% identity, 77% coverage

AFUA_2G13630, Afu2g13630 aromatic aminotransferase Aro8, putative from Aspergillus fumigatus Af293
25% identity, 74% coverage

CG6321 uncharacterized protein from Drosophila melanogaster
26% identity, 88% coverage

RPA1394 transcriptional regulator, GntR family with aminotransferase domain from Rhodopseudomonas palustris CGA009
29% identity, 64% coverage

B2JSD8 Transcriptional regulator, GntR family with aminotransferase domain from Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)
29% identity, 63% coverage

DDF84_RS21915 PLP-dependent aminotransferase family protein from Cupriavidus metallidurans
33% identity, 63% coverage

Q2YUS3 HTH-type transcriptional regulator NorG from Staphylococcus aureus (strain bovine RF122 / ET3-1)
25% identity, 74% coverage

DVU0030 / VIMSS7533539 DVU0030 regulator of Amino acid transport from Desulfomicrobium baculatum DSM 4028
26% identity, 79% coverage

A0A1D8PG20 2-aminoadipate transaminase (EC 2.6.1.39); aromatic-amino-acid transaminase (EC 2.6.1.57) from Candida albicans (see 2 papers)
XP_719544 bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase from Candida albicans SC5314
26% identity, 77% coverage

Q63NL7 GntR-family regulatory protein from Burkholderia pseudomallei (strain K96243)
27% identity, 68% coverage

Dd703_3064 putative transcriptional regulator, GntR family from Dickeya dadantii Ech703
29% identity, 73% coverage

6hndB / A0A1D8PMC5 Crystal structure of the aromatic aminotransferase aro9 from c. Albicans (see paper)
30% identity, 68% coverage

An02g05540 uncharacterized protein from Aspergillus niger
25% identity, 73% coverage

SEN3898 putative GntR-family regulatory protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
26% identity, 68% coverage

A9BMY2 Transcriptional regulator, GntR family with aminotransferase domain from Delftia acidovorans (strain DSM 14801 / SPH-1)
30% identity, 65% coverage

Q6D5I8 GntR-family transcriptional regulator from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
28% identity, 64% coverage

6hnuB / C4YJ02 Crystal structure of the aminotransferase aro8 from c. Albicans with ligands (see paper)
25% identity, 79% coverage

DVU0030 / VIMSS8501445 DVU0030 regulator of Amino acid transport from Desulfovibrio vulgaris str. Miyazaki F
26% identity, 73% coverage

Q2KX56 GntR-family transcriptional regulator from Bordetella avium (strain 197N)
29% identity, 69% coverage

DC74_566 PLP-dependent aminotransferase family protein from Streptomyces noursei
29% identity, 84% coverage

C5CM40 Transcriptional regulator, GntR family with aminotransferase domain from Variovorax paradoxus (strain S110)
28% identity, 75% coverage

AATR3_SCHPO / Q9Y7S6 Aromatic amino acid aminotransferase C569.07; EC 2.6.1.57 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPCC569.07 aromatic aminotransferase (predicted) from Schizosaccharomyces pombe
24% identity, 77% coverage

Q129G7 Transcriptional regulator, GntR family from Polaromonas sp. (strain JS666 / ATCC BAA-500)
28% identity, 65% coverage

XALc_1062 hypothetical aminotransferase protein from Xanthomonas albilineans
30% identity, 79% coverage

CNF04620 hypothetical protein from Cryptococcus neoformans var. neoformans JEC21
25% identity, 79% coverage

STY3762 putative GntR-family regulatory protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
t3512 putative GntR-family regulatory protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
26% identity, 69% coverage

H16_B0980 transcriptional regulator, MocR family from Ralstonia eutropha H16
28% identity, 63% coverage

B2JR38 Transcriptional regulator, GntR family with aminotransferase domain from Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)
28% identity, 64% coverage

C0NBP4 Aromatic amino acid aminotransferase from Ajellomyces capsulatus (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
24% identity, 73% coverage

YE2670 putative GntR-family regulatory protein from Yersinia enterocolitica subsp. enterocolitica 8081
26% identity, 66% coverage

Q13LC0 Transcriptional regulator, GntR family from Paraburkholderia xenovorans (strain LB400)
29% identity, 66% coverage

4je5B / P53090 Crystal structure of the aromatic aminotransferase aro8, a putative alpha-aminoadipate aminotransferase in saccharomyces cerevisiae (see paper)
23% identity, 76% coverage

A0A1D8PMC5 aromatic-amino-acid transaminase (EC 2.6.1.57) from Candida albicans (see paper)
XP_716545 aromatic-amino-acid:2-oxoglutarate transaminase from Candida albicans SC5314
29% identity, 61% coverage

ARO8 / P53090 aromatic amino acid/aminoadipate aminotransferase monomer (EC 2.6.1.39; EC 2.6.1.1; EC 2.6.1.28) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 5 papers)
ARO8_YEAST / P53090 Aromatic/aminoadipate aminotransferase 1; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Aromatic amino acid aminotransferase 1; Aromatic amino acid aminotransferase I; Aromatic amino acid-requiring protein 8; EC 2.6.1.39; EC 2.6.1.57 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 8 papers)
P53090 2-aminoadipate transaminase (EC 2.6.1.39); aromatic-amino-acid transaminase (EC 2.6.1.57) from Saccharomyces cerevisiae (see 3 papers)
ARO8 / CAA73946.1 aromatic amino acid aminotransferase I from Saccharomyces cerevisiae (see paper)
NP_011313 bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase from Saccharomyces cerevisiae S288C
NP_011313, YGL202W Aro8p from Saccharomyces cerevisiae
23% identity, 76% coverage

blr2136 blr2136 from Bradyrhizobium japonicum USDA 110
27% identity, 90% coverage

DVU0030 / VIMSS7650531 DVU0030 regulator of Amino acid transport from Desulfovibrio magneticus RS-1
25% identity, 77% coverage

P49309 Probable rhizopine catabolism regulatory protein MocR from Rhizobium meliloti
25% identity, 74% coverage

DVU0030 / VIMSS393253 DVU0030 regulator of Amino acid transport from Desulfovibrio desulfuricans G20
23% identity, 73% coverage

C4ZIR5 Transcriptional regulator, GntR family with aminotransferase domain from Thauera aminoaromatica
29% identity, 66% coverage

AATR2_SCHPO / O94570 Aromatic amino acid aminotransferase C1773.13; EC 2.6.1.57 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPBC1773.13 aromatic aminotransferase (predicted) from Schizosaccharomyces pombe
25% identity, 81% coverage

AATR1_SCHPO / O14192 Aromatic amino acid aminotransferase C56E4.03; EC 2.6.1.57 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC56E4.03 aromatic aminotransferase (predicted) from Schizosaccharomyces pombe
25% identity, 83% coverage

BMEI0169 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY / AMINOTRANSFERASE CLASS-I from Brucella melitensis 16M
27% identity, 71% coverage

PA5431 probable transcriptional regulator from Pseudomonas aeruginosa PAO1
30% identity, 53% coverage

BLJAPNOD_05769 PLP-dependent aminotransferase family protein from Ensifer sp. M14
28% identity, 64% coverage

ANIA_06338 hypothetical protein from Aspergillus nidulans FGSC A4
24% identity, 74% coverage

PdxR / VIMSS5804477 PdxR regulator of Pyridoxine biosynthesis, effector Pyridoxal-5-phosphate from Streptococcus equi subsp. zooepidemicus MGCS10565
27% identity, 63% coverage

SP_1393 hypothetical protein from Streptococcus pneumoniae TIGR4
29% identity, 58% coverage

SPV_1225 PLP-dependent aminotransferase family protein from Streptococcus pneumoniae
29% identity, 58% coverage

SPD_1225 hypothetical protein from Streptococcus pneumoniae D39
spr1250 Conserved hypothetical protein from Streptococcus pneumoniae R6
29% identity, 58% coverage

TAUR_RHOCB / D5AKX9 HTH-type transcriptional regulator TauR from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (see paper)
29% identity, 73% coverage

BURPS668_1157 transcriptional regulator, GntR family/aminotransferase from Burkholderia pseudomallei 668
27% identity, 63% coverage

Q6F766 Putative transcriptional regulator (GntR family) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
28% identity, 66% coverage

B2U7Y5 Transcriptional regulator, GntR family with aminotransferase domain from Ralstonia pickettii (strain 12J)
27% identity, 71% coverage

TK2268 aspartate aminotransferase from Thermococcus kodakaraensis KOD1
24% identity, 99% coverage

CTRG_01079 aromatic amino acid aminotransferase I from Candida tropicalis MYA-3404
28% identity, 61% coverage

BAB1_1894 Bacterial regulatory protein, GntR family:Aminotransferase, class I and II from Brucella melitensis biovar Abortus 2308
27% identity, 70% coverage

PF0522 aspartate transaminase from Pyrococcus furiosus DSM 3638
25% identity, 100% coverage

CH_124006 amino transferase [Aspergillus fumigatus] from Magnaporthe grisea 70-15 (see paper)
23% identity, 68% coverage

A4EE37 Transcriptional regulator, gntR family, putative from Roseobacter sp. CCS2
25% identity, 72% coverage

CBO0640 GntR-family transcriptional regulator from Clostridium botulinum A str. ATCC 3502
26% identity, 70% coverage

OCC_08839 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme from Thermococcus litoralis DSM 5473
25% identity, 100% coverage

DMB42_RS42745 PLP-dependent aminotransferase family protein from Nonomuraea sp. WAC 01424
25% identity, 88% coverage

AORI_1491 PLP-dependent aminotransferase family protein from Amycolatopsis keratiniphila
27% identity, 85% coverage

BMD20_10060 PLP-dependent aminotransferase family protein from Burkholderia multivorans
27% identity, 71% coverage

MSMEG_2323 GntR-family protein transcriptional regulator from Mycobacterium smegmatis str. MC2 155
MSMEG_1043 GntR-family protein transcriptional regulator from Mycobacterium smegmatis str. MC2 155
29% identity, 67% coverage

AF_1623 pyridoxal phosphate-dependent aminotransferase from Archaeoglobus fulgidus DSM 4304
26% identity, 98% coverage

ARO9 / CAA73950.1 aromatic amino acid aminotransferase II from Saccharomyces cerevisiae (see paper)
25% identity, 71% coverage

ARO9 / P38840 aromatic amino acid aminotransferase II (EC 2.6.1.1; EC 2.6.1.58; EC 2.6.1.28) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 3 papers)
ARO9_YEAST / P38840 Aromatic amino acid aminotransferase 2; Aromatic amino acid aminotransferase II; Aromatic amino acid-requiring protein 9; Kynurenine aminotransferase I; KAT I; EC 2.6.1.57; EC 2.6.1.7 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 7 papers)
P38840 aromatic-amino-acid transaminase (EC 2.6.1.57) from Saccharomyces cerevisiae (see 2 papers)
NP_012005, YHR137W Aro9p from Saccharomyces cerevisiae
NP_012005 aromatic-amino-acid:2-oxoglutarate transaminase from Saccharomyces cerevisiae S288C
25% identity, 71% coverage

DVU0030 / VIMSS408289 DVU0030 regulator of Amino acid transport from Desulfovibrio vulgaris Hildenborough
DVU0030 transcriptional regulator, GntR family from Desulfovibrio vulgaris Hildenborough
24% identity, 72% coverage

XP_002850893 aromatic amino acid aminotransferase from Microsporum canis CBS 113480
24% identity, 79% coverage

A8GJW1 Transcriptional regulator, GntR family with aminotransferase domain from Serratia proteamaculans (strain 568)
27% identity, 67% coverage

RBAM_RS02920 PLP-dependent aminotransferase family protein from Bacillus velezensis FZB42
24% identity, 79% coverage

UV8b_02651 uncharacterized protein from Ustilaginoidea virens
24% identity, 69% coverage

1v2eA / Q75WK2 Crystal structure of t.Th hb8 glutamine aminotransferase complex with a-keto-g-methylthiobutyrate (see paper)
27% identity, 92% coverage

BSU09480 putative PLP-dependent transcriptional regulator from Bacillus subtilis subsp. subtilis str. 168
24% identity, 78% coverage

BAD06364.1 aminotransferase from Thermus thermophilus (see paper)
27% identity, 92% coverage

CNX70_15425 PLP-dependent aminotransferase family protein from Janthinobacterium svalbardensis
25% identity, 69% coverage

HPGT_AMYOR / O52815 (S)-3,5-dihydroxyphenylglycine transaminase; p-hydroxyphenylglycine transaminase; EC 2.6.1.103 from Amycolatopsis orientalis (Nocardia orientalis) (see 2 papers)
27% identity, 83% coverage

SSU_RS02755 PLP-dependent aminotransferase family protein from Streptococcus suis P1/7
25% identity, 82% coverage

PH0771 aspartate aminotransferase from Pyrococcus horikoshii OT3
25% identity, 100% coverage

Francci3_2452 aminotransferase, class I and II from Frankia sp. CcI3
26% identity, 83% coverage

SMb21525 putative transcriptional regulator protein from Sinorhizobium meliloti 1021
28% identity, 64% coverage

SMb20039 putative transcriptional regulator protein from Sinorhizobium meliloti 1021
28% identity, 73% coverage

ACICU_01470 transcriptional regulator from Acinetobacter baumannii ACICU
22% identity, 80% coverage

Pden_1648 putative transcriptional regulator, GntR family from Paracoccus denitrificans PD1222
29% identity, 62% coverage

patA / P16524 N-acetyl-L,L-diaminopimelate aminotransferase from Bacillus subtilis (strain 168) (see 3 papers)
DAPX_BACSU / P16524 Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis (strain 168) (see paper)
BSU14000 aminotransferase A from Bacillus subtilis subsp. subtilis str. 168
28% identity, 98% coverage

PdxR / VIMSS10395811 PdxR regulator of Pyridoxine biosynthesis, effector Pyridoxal-5-phosphate from Streptococcus gallolyticus UCN34
SGGBAA2069_c10980, SGGB_1101 PLP-dependent aminotransferase family protein from Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
GALLO_1111 putative transcriptional regulator, GntR family from Streptococcus gallolyticus UCN34
26% identity, 78% coverage

CNB03180 hypothetical protein from Cryptococcus neoformans var. neoformans JEC21
27% identity, 71% coverage

MSMEG_5760 GntR-family protein regulator from Mycobacterium smegmatis str. MC2 155
31% identity, 58% coverage

SGPB_0968 PLP-dependent aminotransferase family protein from Streptococcus pasteurianus ATCC 43144
27% identity, 64% coverage

A6TF79 Bacterial regulatory protein, GntR from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
KPN_03826 putative bacterial regulatory protein, GntR from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
31% identity, 49% coverage

VK055_1967 PLP-dependent aminotransferase family protein from Klebsiella pneumoniae subsp. pneumoniae
28% identity, 66% coverage

Pden_4274 putative transcriptional regulator, GntR family from Paracoccus denitrificans PD1222
26% identity, 62% coverage

PdxR / VIMSS3789276 PdxR regulator of Pyridoxine biosynthesis, effector Pyridoxal-5-phosphate from Streptococcus gordonii str. Challis substr. CH1
26% identity, 54% coverage

SCO1289 gntR-family regulatory protein from Streptomyces coelicolor A3(2)
28% identity, 57% coverage

XP_033604917 L-kynurenine/alpha-aminoadipate aminotransferase from Pseudovirgaria hyperparasitica
25% identity, 65% coverage

atrD / B7STY2 L-tyrosine:2-oxoglutarate aminotransferase (EC 2.6.1.1) from Tapinella panuoides (see paper)
ATRD_TAPPA / B7STY2 L-tyrosine:2-oxoglutarate aminotransferase atrD; Atromentin biosynthesis protein D; EC 2.6.1.5 from Tapinella panuoides (Oyster rollrim mushroom) (Paxillus panuoides) (see 5 papers)
26% identity, 63% coverage

BSU31400 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
26% identity, 97% coverage

SWNA_ARTBC / D4AU29 Aminotransferase swnA; Swainsonine biosynthesis gene cluster protein A; EC 2.6.1.- from Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes) (see paper)
XP_003014122 aromatic amino acid aminotransferase, putative from Trichophyton benhamiae CBS 112371
25% identity, 67% coverage

SANR_RS04950 PLP-dependent aminotransferase family protein from Streptococcus anginosus C238
26% identity, 67% coverage

AMT1_SERL9 / F8P1W6 L-tyrosine:2-oxoglutarate aminotransferase amt1; Atromentin biosynthesis protein amt1; EC 2.6.1.5 from Serpula lacrymans var. lacrymans (strain S7.9) (Dry rot fungus) (see paper)
25% identity, 57% coverage

Mkms_1901 putative transcriptional regulator, GntR family from Mycobacterium sp. KMS
27% identity, 67% coverage

HISP_16825 pyridoxal phosphate-dependent aminotransferase from Haloarcula hispanica N601
27% identity, 96% coverage

XP_003020761 aromatic amino acid aminotransferase, putative from Trichophyton verrucosum HKI 0517
25% identity, 67% coverage

An15g02460 uncharacterized protein from Aspergillus niger
24% identity, 58% coverage

SAIN_0897 PLP-dependent aminotransferase family protein from Streptococcus anginosus C1051
26% identity, 67% coverage

XP_003238868 uncharacterized protein from Trichophyton rubrum CBS 118892
24% identity, 79% coverage

Mvan_2084 putative transcriptional regulator, GntR family from Mycobacterium vanbaalenii PYR-1
27% identity, 64% coverage

HMPREF1120_02164 aromatic amino acid aminotransferase I from Exophiala dermatitidis NIH/UT8656
25% identity, 58% coverage

CH1034_280070 PLP-dependent aminotransferase family protein from Klebsiella pneumoniae
27% identity, 62% coverage

SPO3562 transcriptional regulator from Silicibacter pomeroyi DSS-3
SPO3562 PLP-dependent aminotransferase family protein from Ruegeria pomeroyi DSS-3
26% identity, 63% coverage

AF_2366 pyridoxal phosphate-dependent aminotransferase from Archaeoglobus fulgidus DSM 4304
25% identity, 97% coverage

A0A1D8PPA8 aromatic-amino-acid transaminase (EC 2.6.1.57) from Candida albicans (see paper)
27% identity, 53% coverage

LJ1390 aspartate aminotransferase from Lactobacillus johnsonii NCC 533
28% identity, 97% coverage

Tery_0293 aminotransferase, class I and II from Trichodesmium erythraeum IMS101
26% identity, 95% coverage

KPHS_11630 GntR family transcriptional regulator from Klebsiella pneumoniae subsp. pneumoniae HS11286
23% identity, 69% coverage

MSMEG_0426 transcriptional regulator, GntR family protein from Mycobacterium smegmatis str. MC2 155
23% identity, 80% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory