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PaperBLAST

PaperBLAST Hits for reanno::Smeli:SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) (Sinorhizobium meliloti 1021) (579 a.a., MKKKAEWPRK...)

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Found 249 similar proteins in the literature:

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
100% identity, 100% coverage

ARAD_RHILW / B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304) (see 2 papers)
I9XDU6 L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum bv. trifolii (see 2 papers)
75% identity, 100% coverage

RL3612 putative dihydroxy-acid dehydratase from Rhizobium leguminosarum bv. viciae 3841
75% identity, 100% coverage

5j85A / I9XDU6 Ser480ala mutant of l-arabinonate dehydratase (see paper)
75% identity, 99% coverage

RLO149_c021970 L-arabinonate dehydratase from Roseobacter litoralis Och 149
73% identity, 99% coverage

Q986V5 Dihydroxy-acid dehydratase from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
70% identity, 99% coverage

BPHYT_RS19730 L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans PsJN
67% identity, 100% coverage

C785_RS21250 IlvD/Edd family dehydratase from Herbaspirillum huttiense subsp. putei IAM 15032
66% identity, 98% coverage

HSERO_RS05205 L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae SmR1
66% identity, 98% coverage

8epzA / A0A4R3LQ44 Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mn
66% identity, 98% coverage

RD2015_RS13055 IlvD/Edd family dehydratase from Roseateles depolymerans
67% identity, 99% coverage

ARADA_AZOBR / Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense (see paper)
Q1JUQ1 L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense (see paper)
66% identity, 98% coverage

PS417_11000 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae WCS417
67% identity, 98% coverage

Pf6N2E2_609 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2E2
67% identity, 98% coverage

PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens GW456-L13
67% identity, 98% coverage

AO356_24585 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2C3
67% identity, 98% coverage

Shewana3_2070 L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp. ANA-3
65% identity, 98% coverage

ILVD1_RHIME / Q92RP0 Putative dehydratase IlvD1; EC 4.2.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
65% identity, 99% coverage

C9Z6A7 Putative dihydroxy-acid dehydratase from Streptomyces scabiei (strain 87.22)
SCAB_88411 putative dihydroxy-acid dehydratase from Streptomyces scabiei 87.22
56% identity, 98% coverage

Pan258_40810 IlvD/Edd family dehydratase from Symmachiella dynata
53% identity, 98% coverage

Mal52_42460 IlvD/Edd family dehydratase from Symmachiella dynata
53% identity, 98% coverage

CA54_38120 IlvD/Edd family dehydratase from Symmachiella macrocystis
52% identity, 98% coverage

RHE_RS23070 L-arabinonate dehydratase from Rhizobium etli CFN 42
51% identity, 98% coverage

Atu3971 dihydroxy-acid dehydratase from Agrobacterium tumefaciens str. C58 (Cereon)
50% identity, 96% coverage

SMc04144 PUTATIVE DIHYDROXY-ACID DEHYDRATASE PROTEIN from Sinorhizobium meliloti 1021
49% identity, 97% coverage

NP_436655 putative dihydroxy-acid dehydratase protein from Sinorhizobium meliloti 1021
50% identity, 97% coverage

AT5A_22266 L-arabinonate dehydratase from Agrobacterium tumefaciens 5A
50% identity, 96% coverage

CA51_17990 L-arabinonate dehydratase from Rosistilla oblonga
47% identity, 98% coverage

Mal33_18570 L-arabinonate dehydratase from Rosistilla oblonga
47% identity, 97% coverage

Poly24_12210 L-arabinonate dehydratase from Rosistilla carotiformis
47% identity, 97% coverage

AB395_00004794 L-arabinonate dehydratase from Sinorhizobium fredii CCBAU 45436
48% identity, 97% coverage

SGD_PSEPU / P0DOV7 6-deoxy-6-sulfo-D-gluconate dehydratase; SG dehydratase; EC 4.2.1.162 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
45% identity, 98% coverage

BMEII0356 dihydroxy-acid dehydratase from Brucella melitensis 16M
50% identity, 87% coverage

BAB2_0294 Dihydroxy-acid and 6-phosphogluconate dehydratase:ATP/GTP-binding site motif A (P-loop) from Brucella melitensis biovar Abortus 2308
50% identity, 87% coverage

PVLB_18565 IlvD/Edd family dehydratase from Pseudomonas sp. VLB120
47% identity, 96% coverage

7m3kA / Q2YJ21 Crystal structure of galactonate dehydratase from brucella melitensis biovar abortus 2308
50% identity, 89% coverage

A1S_1795 dihydroxy-acid dehydratase from Acinetobacter baumannii ATCC 17978
46% identity, 93% coverage

AO356_28760 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2C3
46% identity, 94% coverage

Atu3219 dihydroxy-acid dehydratase from Agrobacterium tumefaciens str. C58 (Cereon)
48% identity, 89% coverage

Pf6N2E2_1668 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2E2
45% identity, 94% coverage

Atu2736 dihydroxy-acid dehydratase from Agrobacterium tumefaciens str. C58 (Cereon)
45% identity, 94% coverage

C785_RS00855 IlvD/Edd family dehydratase from Herbaspirillum huttiense subsp. putei IAM 15032
42% identity, 97% coverage

CCNA_00862 Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus NA1000
xylD / A0A0H3C6H6 xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides (strain NA1000 / CB15N) (see paper)
CCNA_00862, YP_002516235 xylonate dehydratase xylD from Caulobacter crescentus NA1000
43% identity, 95% coverage

5oynA / Q9A9Z2 Crystal structure of d-xylonate dehydratase in holo-form (see paper)
43% identity, 95% coverage

XYLD_CAUVC / Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus) (see 3 papers)
Q9A9Z2 xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides (see 2 papers)
CC0819, CC_0819 dehydratase, IlvD/Edd family from Caulobacter crescentus CB15
43% identity, 94% coverage

AFUA_2G16300 dihydroxy acid dehydratase, putative from Aspergillus fumigatus Af293
45% identity, 82% coverage

An15g06700 uncharacterized protein from Aspergillus niger
45% identity, 87% coverage

Q9A8D3 Dehydratase, IlvD/Edd family from Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
46% identity, 95% coverage

AFUA_1G07330 dihydroxy-acid dehydratase, putative from Aspergillus fumigatus Af293
39% identity, 92% coverage

Q9UZ03 Dihydroxy-acid dehydratase from Pyrococcus abyssi (strain GE5 / Orsay)
42% identity, 92% coverage

Cthe_2713 dihydroxy-acid dehydratase from Clostridium thermocellum ATCC 27405
40% identity, 93% coverage

FNP_0059 dihydroxy-acid dehydratase from Fusobacterium polymorphum ATCC 10953
40% identity, 92% coverage

Tsac_0569 dihydroxy-acid dehydratase from Thermoanaerobacterium saccharolyticum JW/SL-YS485
39% identity, 93% coverage

ilvDD / O27498 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (see 4 papers)
40% identity, 93% coverage

CAC3170 Dihydroxy-acid dehydratase from Clostridium acetobutylicum ATCC 824
CA_C3170 dihydroxy-acid dehydratase from Clostridium acetobutylicum ATCC 824
40% identity, 92% coverage

PF0942 dihydroxy-acid dehydratase from Pyrococcus furiosus DSM 3638
42% identity, 93% coverage

Clocel_0493 dihydroxy-acid dehydratase from Clostridium cellulovorans 743B
37% identity, 96% coverage

Q8F219 Dihydroxy-acid dehydratase from Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
38% identity, 96% coverage

LIC11101 dihydroxy-acid dehydratase from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
38% identity, 96% coverage

Dde_0116 dihydroxy-acid dehydratase from Desulfovibrio desulfuricans G20
38% identity, 95% coverage

BMMGA3_10275 dihydroxy-acid dehydratase from Bacillus methanolicus MGA3
39% identity, 93% coverage

SXYL_02469 dihydroxy-acid dehydratase from Staphylococcus xylosus
38% identity, 93% coverage

LBYS11_13595 dihydroxy-acid dehydratase from Lysinibacillus sp. YS11
38% identity, 92% coverage

CIBE_4586 dihydroxy-acid dehydratase from Clostridium beijerinckii
37% identity, 94% coverage

CTN_RS00550 dihydroxy-acid dehydratase from Thermotoga neapolitana DSM 4359
39% identity, 92% coverage

B2TIR2 Dihydroxy-acid dehydratase from Clostridium botulinum (strain Eklund 17B / Type B)
36% identity, 96% coverage

B9E299 Dihydroxy-acid dehydratase from Clostridium kluyveri (strain NBRC 12016)
36% identity, 94% coverage

F502_03482 dihydroxy-acid dehydratase from Clostridium pasteurianum DSM 525 = ATCC 6013
38% identity, 92% coverage

C4ZAW6 Dihydroxy-acid dehydratase from Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)
39% identity, 90% coverage

SP_2126 dihydroxy-acid dehydratase from Streptococcus pneumoniae TIGR4
spr1935 Dihydroxyacid dehydratase from Streptococcus pneumoniae R6
SPD_1956 dihydroxy-acid dehydratase from Streptococcus pneumoniae D39
38% identity, 93% coverage

WP_010874288 dihydroxy-acid dehydratase from Synechocystis sp. PCC 6803
slr0452 dihydroxyacid dehydratase from Synechocystis sp. PCC 6803
38% identity, 96% coverage

Q1ILZ0 Dihydroxy-acid dehydratase from Koribacter versatilis (strain Ellin345)
36% identity, 97% coverage

ABO_0180 dihydroxy-acid dehydratase from Alcanivorax borkumensis SK2
39% identity, 96% coverage

Q74BW7 Dihydroxy-acid dehydratase from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GSU1912 dihydroxy-acid dehydratase from Geobacter sulfurreducens PCA
39% identity, 92% coverage

ilvD / Q0K7F8 dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (see paper)
Q0K7F8 dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator (see paper)
38% identity, 96% coverage

PMM0774 Dihydroxy-acid dehydratase from Prochlorococcus marinus sp. MED4
35% identity, 96% coverage

MRA_0197 dihydroxy-acid dehydratase from Mycobacterium tuberculosis H37Ra
39% identity, 95% coverage

CD2014 dihydroxy-acid dehydratase from Clostridium difficile 630
37% identity, 93% coverage

6ovtA / P9WKJ5 Crystal structure of ilvd from mycobacterium tuberculosis (see paper)
39% identity, 95% coverage

ILVD_MYCTU / P9WKJ5 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
Rv0189c dihydroxy-acid dehydratase from Mycobacterium tuberculosis H37Rv
NP_214703 dihydroxy-acid dehydratase from Mycobacterium tuberculosis H37Rv
39% identity, 95% coverage

Q97UB2 dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus (see 2 papers)
SSO3107 Dihydroxy-acid dehydratase (ilvD) from Sulfolobus solfataricus P2
36% identity, 96% coverage

SMU_RS09725 dihydroxy-acid dehydratase from Streptococcus mutans UA159
Q8DRT7 Dihydroxy-acid dehydratase from Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
37% identity, 93% coverage

WP_011692381 dihydroxy-acid dehydratase from Arthrobacter sp. FB24
37% identity, 93% coverage

Q8XWR1 Dihydroxy-acid dehydratase from Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
37% identity, 96% coverage

ACIAD3636 putative dihydroxyacid dehydratase (ilvD-like) from Acinetobacter sp. ADP1
37% identity, 93% coverage

alr2771 dihydroxyacid dehydratase from Nostoc sp. PCC 7120
37% identity, 93% coverage

GYMC52_2001 dihydroxy-acid dehydratase from Geobacillus sp. Y412MC52
35% identity, 92% coverage

LMON_2054, LMRG_RS10020 dihydroxy-acid dehydratase from Listeria monocytogenes 10403S
lmo1983 similar to dihydroxy-acid dehydratase from Listeria monocytogenes EGD-e
LMRG_01131 dihydroxy-acid dehydratase from Listeria monocytogenes 10403S
36% identity, 90% coverage

SAUSA300_RS11035, USA300HOU_RS11060 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus USA300_TCH1516
SAUSA300_2006 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus USA300_FPR3757
35% identity, 92% coverage

A8IX80 dihydroxy-acid dehydratase from Chlamydomonas reinhardtii
38% identity, 86% coverage

SE1654 dihydroxy-acid dehydratase from Staphylococcus epidermidis ATCC 12228
35% identity, 92% coverage

GBAA_1853 dihydroxy-acid dehydratase from Bacillus anthracis str. 'Ames Ancestor'
BAS1717 dihydroxy-acid dehydratase from Bacillus anthracis str. Sterne
35% identity, 93% coverage

SAV2053 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus Mu50
SA1858 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus N315
SAOUHSC_02281 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus NCTC 8325
35% identity, 92% coverage

G7IRL3 dihydroxy-acid dehydratase from Medicago truncatula
36% identity, 87% coverage

HD73_2029 dihydroxy-acid dehydratase from Bacillus thuringiensis serovar kurstaki str. HD73
35% identity, 93% coverage

NWMN_1960 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus str. Newman
SACOL2042 dihydroxy-acid dehydratase from Staphylococcus aureus subsp. aureus COL
35% identity, 92% coverage

A0A481UJA7 dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis (see paper)
36% identity, 89% coverage

Ssal_00131 dihydroxy-acid dehydratase from Streptococcus salivarius 57.I
34% identity, 90% coverage

VDAG_04620 dihydroxy-acid dehydratase from Verticillium dahliae VdLs.17
35% identity, 89% coverage

ILVD_ARATH / Q9LIR4 Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q9LIR4 dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana (see 2 papers)
NP_189036 dehydratase family from Arabidopsis thaliana
AT3G23940 dehydratase family from Arabidopsis thaliana
36% identity, 89% coverage

SXYL_00875 dihydroxy-acid dehydratase from Staphylococcus xylosus
34% identity, 92% coverage

PADG_07241 dihydroxy-acid dehydratase from Paracoccidioides brasiliensis Pb18
36% identity, 85% coverage

PAAG_00014 dihydroxy-acid dehydratase from Paracoccidioides lutzii Pb01
36% identity, 85% coverage

MGL_3741 uncharacterized protein from Malassezia globosa CBS 7966
36% identity, 89% coverage

8hs0A / Q9LIR4 The mutant structure of dhad v178w
36% identity, 94% coverage

Caur_2851 dihydroxy-acid dehydratase from Chloroflexus aurantiacus J-10-fl
37% identity, 93% coverage

ABH19_09600 dihydroxy-acid dehydratase from Leptospirillum sp. Group II 'CF-1'
36% identity, 93% coverage

FOIG_06470 dihydroxy-acid dehydratase, mitochondrial from Fusarium odoratissimum NRRL 54006
35% identity, 89% coverage

PHYSODRAFT_557322 hypothetical protein from Phytophthora sojae
36% identity, 87% coverage

PITG_22685 dihydroxy-acid dehydratase, putative from Phytophthora infestans T30-4
36% identity, 87% coverage

BBA_09252 dihydroxy-acid dehydratase from Beauveria bassiana ARSEF 2860
35% identity, 85% coverage

SPAC17G8.06c dihydroxy-acid dehydratase from Schizosaccharomyces pombe
35% identity, 87% coverage

CNH01530 dihydroxy-acid dehydratase, putative from Cryptococcus neoformans var. neoformans JEC21
34% identity, 89% coverage

Cj0013 dihydroxy-acid dehydratase from Campylobacter jejuni subsp. jejuni NCTC 11168
34% identity, 93% coverage

ILVC_ASPFU / Q4X099 Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) (Neosartorya fumigata) (see paper)
AFUA_2G14210, Afu2g14210 dihydroxy acid dehydratase Ilv3, putative from Aspergillus fumigatus Af293
35% identity, 85% coverage

B0XTT1 dihydroxy-acid dehydratase from Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)
35% identity, 81% coverage

FPSE_05147 hypothetical protein from Fusarium pseudograminearum CS3096
35% identity, 87% coverage

FGSG_02056 dihydroxy-acid dehydratase from Fusarium graminearum PH-1
35% identity, 86% coverage

ZP_01094431 dihydroxy-acid dehydratase from Blastopirellula marina DSM 3645
36% identity, 89% coverage

XP_958280 dihydroxy-acid dehydratase from Neurospora crassa OR74A
34% identity, 93% coverage

rrnAC0302 dihydroxy-acid dehydratase from Haloarcula marismortui ATCC 43049
36% identity, 92% coverage

NMB1150 dihydroxy-acid dehydratase from Neisseria meningitidis MC58
35% identity, 83% coverage

Sb07g024070 No description from Sorghum bicolor
35% identity, 88% coverage

B4FWX5 dihydroxy-acid dehydratase from Zea mays
35% identity, 88% coverage

An14g03280 uncharacterized protein from Aspergillus niger
35% identity, 85% coverage

Q7UJ69 Dihydroxy-acid dehydratase from Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
35% identity, 90% coverage

ILV3_YEAST / P39522 Dihydroxy-acid dehydratase, mitochondrial; DAD; EC 4.2.1.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 13 papers)
NP_012550, YJR016C Dihydroxyacid dehydratase, catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids from Saccharomyces cerevisiae
34% identity, 95% coverage

Q5F8G6 Dihydroxy-acid dehydratase from Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
35% identity, 83% coverage

CHLNCDRAFT_58991 hypothetical protein from Chlorella variabilis
E1ZPZ3 dihydroxy-acid dehydratase from Chlorella variabilis
37% identity, 44% coverage

HI0738 dihydroxyacid dehydratase (ilvD) from Haemophilus influenzae Rd KW20
35% identity, 86% coverage

BCAM1262 dihydroxyacid dehydratase from Burkholderia cenocepacia J2315
34% identity, 88% coverage

APL_0097 Dihydroxy-acid dehydratase from Actinobacillus pleuropneumoniae L20
34% identity, 84% coverage

Q31QL1 Dihydroxy-acid dehydratase from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Synpcc7942_0626 dihydroxy-acid dehydratase from Synechococcus elongatus PCC 7942
34% identity, 83% coverage

ABO_2312 dihydroxy-acid dehydratase from Alcanivorax borkumensis SK2
35% identity, 77% coverage

CC77DRAFT_1063831 dihydroxy-acid dehydratase-like protein from Alternaria alternata
32% identity, 90% coverage

CA_C3604, WP_010966867 dihydroxy-acid dehydratase from Clostridium acetobutylicum ATCC 824
33% identity, 87% coverage

MS2219 dihydroxy-acid dehydratase from [Mannheimia] succiniciproducens MBEL55E
34% identity, 86% coverage

salH / B0L7G4 dihydroxy-acid dehydratase from Salinispora tropica (see paper)
34% identity, 90% coverage

MS2219 IlvD protein from Mannheimia succiniciproducens MBEL55E
34% identity, 85% coverage

ACIAD1266 dihydroxy-acid dehydratase from Acinetobacter sp. ADP1
35% identity, 84% coverage

PFLU5797 dihydroxy-acid dehydratase from Pseudomonas fluorescens SBW25
35% identity, 84% coverage

NP_879169 dihydroxy-acid dehydratase from Bordetella pertussis Tohama I
BP0289 dihydroxy-acid dehydratase from Bordetella pertussis Tohama I
35% identity, 83% coverage

8imuA / Q9LIR4 Dihydroxyacid dehydratase (dhad) mutant-v497f
34% identity, 94% coverage

WP_007877043 dihydroxy-acid dehydratase from Herbaspirillum sp. CF444
33% identity, 83% coverage

BB0431 dihydroxy-acid dehydratase from Bordetella bronchiseptica RB50
35% identity, 83% coverage

PFL_5877 dihydroxy-acid dehydratase from Pseudomonas fluorescens Pf-5
35% identity, 84% coverage

llmg_1280 dihydroxy-acid dehydratase from Lactococcus lactis subsp. cremoris MG1363
33% identity, 90% coverage

Atu1918 dihydroxy-acid dehydratase from Agrobacterium tumefaciens str. C58 (Cereon)
34% identity, 84% coverage

PITG_20759 dihydroxy-acid dehydratase from Phytophthora infestans T30-4
36% identity, 81% coverage

A1S_3455 dihydroxy-acid dehydratase from Acinetobacter baumannii ATCC 17978
35% identity, 85% coverage

VC0028 dihydroxy-acid dehydratase from Vibrio cholerae O1 biovar eltor str. N16961
34% identity, 84% coverage

IlvD / b3771 dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli K-12 substr. MG1655 (see paper)
ilvD / P05791 dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli (strain K12) (see 14 papers)
ILVD_ECOLI / P05791 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli (strain K12) (see 4 papers)
ilvD / EW|b3771 dihydroxyacid dehydratase from Escherichia coli K12 (see 2 papers)
YP_026248 dihydroxy-acid dehydratase from Escherichia coli str. K-12 substr. MG1655
b3771 dihydroxy-acid dehydratase from Escherichia coli str. K-12 substr. MG1655
34% identity, 83% coverage

NJ56_05450 dihydroxy-acid dehydratase from Yersinia ruckeri
34% identity, 84% coverage

SAV_4716 dihydroxy-acid dehydratase from Streptomyces avermitilis MA-4680
32% identity, 85% coverage

KPN_04270 dihydroxy-acid dehydratase from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
A6TGF8 Dihydroxy-acid dehydratase from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
33% identity, 83% coverage

ECs4705 dihydroxyacid dehydratase from Escherichia coli O157:H7 str. Sakai
34% identity, 83% coverage

AB395_RS15445 dihydroxy-acid dehydratase from Sinorhizobium fredii CCBAU 45436
33% identity, 84% coverage

AFUA_1G03550 mitochondrial dihydroxy acid dehydratase, putative from Aspergillus fumigatus Af293
33% identity, 90% coverage

PP_5128 dihydroxy-acid dehydratase from Pseudomonas putida KT2440
34% identity, 84% coverage

PVLB_01425 dihydroxy-acid dehydratase from Pseudomonas sp. VLB120
34% identity, 84% coverage

PA0353 dihydroxy-acid dehydratase from Pseudomonas aeruginosa PAO1
PA14_04630 dihydroxy-acid dehydratase from Pseudomonas aeruginosa UCBPP-PA14
34% identity, 84% coverage

bll6092 dihydroxy-acid dehydratase from Bradyrhizobium japonicum USDA 110
33% identity, 96% coverage

Q8NQZ9 dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum (see 2 papers)
NCgl1219 dihydroxy-acid dehydratase from Corynebacterium glutamicum ATCC 13032
cg1432 dihydroxy-acid dehydratase from Corynebacterium glutamicum ATCC 13032
33% identity, 85% coverage

BIF_00467 dihydroxy-acid dehydratase from Bifidobacterium animalis subsp. lactis BB-12
33% identity, 82% coverage

AO090009000414 No description from Aspergillus oryzae RIB40
32% identity, 90% coverage

DR1132, DR_1132 dihydroxy-acid dehydratase from Deinococcus radiodurans R1
34% identity, 84% coverage

IYO_025960 dihydroxy-acid dehydratase from Pseudomonas syringae pv. actinidiae ICMP 18884
33% identity, 83% coverage

NP_386934 PROBABLE DIHYDROXY-ACID DEHYDRATASE PROTEIN from Sinorhizobium meliloti 1021
34% identity, 84% coverage

BL1788 dihydroxy-acid dehydratase from Bifidobacterium longum NCC2705
32% identity, 81% coverage

ILVD_CAUVC / P55186 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus) (see paper)
CC3044, CC_3044 dihydroxy-acid dehydratase from Caulobacter crescentus CB15
CCNA_03139 dihydroxy-acid dehydratase from Caulobacter crescentus NA1000
34% identity, 84% coverage

SC3809 dihydroxyacid dehydratase from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
33% identity, 83% coverage

SCO3345 dihydroxy-acid dehydratase from Streptomyces coelicolor A3(2)
33% identity, 83% coverage

MSMEG_1290 dihydroxy-acid dehydratase from Mycobacterium smegmatis str. MC2 155
32% identity, 81% coverage

RHE_RS08720 dihydroxy-acid dehydratase from Rhizobium etli CFN 42
34% identity, 84% coverage

ILVD_RHIJ3 / Q1MIB2 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841) (Rhizobium leguminosarum bv. viciae) (see paper)
RL1803 putative dihydroxy-acid dehydratase from Rhizobium leguminosarum bv. viciae 3841
34% identity, 84% coverage

A9KL28 Dihydroxy-acid dehydratase from Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
34% identity, 87% coverage

EAMY_0161 dihydroxy-acid dehydratase from Erwinia amylovora CFBP1430
34% identity, 83% coverage

ZMO1792 dihydroxy-acid dehydratase from Zymomonas mobilis subsp. mobilis ZM4
33% identity, 83% coverage

Psyr_0469 Dihydroxy-acid dehydratase from Pseudomonas syringae pv. syringae B728a
33% identity, 83% coverage

Rru_A1786 Dihydroxy-acid dehydratase from Rhodospirillum rubrum ATCC 11170
34% identity, 83% coverage

Q2RTF9 Dihydroxy-acid dehydratase from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
34% identity, 84% coverage

NP_462432 putative dihydroxyacid dehydratase from Salmonella typhimurium LT2
34% identity, 84% coverage

HSM_0213 dihydroxy-acid dehydratase from Haemophilus somnus 2336
HSM_0213 dihydroxy-acid dehydratase from Histophilus somni 2336
32% identity, 84% coverage

DIP1096 dihydroxy-acid dehydratase from Corynebacterium diphtheriae NCTC 13129
32% identity, 85% coverage

Q2YNW9 Dihydroxy-acid dehydratase from Brucella abortus (strain 2308)
BAB1_0096 Dihydroxy-acid and 6-phosphogluconate dehydratase:Dihydroxy-acid dehydratase from Brucella melitensis biovar Abortus 2308
33% identity, 84% coverage

BMEI1848 DIHYDROXY-ACID DEHYDRATASE from Brucella melitensis 16M
33% identity, 84% coverage

XHV734_0458 dihydroxy-acid dehydratase from Xanthomonas hortorum pv. vitians
34% identity, 84% coverage

PXO_03941 dihydroxy-acid dehydratase from Xanthomonas oryzae pv. oryzae PXO99A
34% identity, 84% coverage

PMI3302 dihydroxy-acid dehydratase from Proteus mirabilis HI4320
PMI_RS16415 dihydroxy-acid dehydratase from Proteus mirabilis HI4320
34% identity, 84% coverage

VF_2559 dihydroxy-acid dehydratase from Vibrio fischeri ES114
32% identity, 84% coverage

Cp258_0893 dihydroxy-acid dehydratase from Corynebacterium pseudotuberculosis 258
33% identity, 85% coverage

Q8A608 Dihydroxy-acid dehydratase from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
31% identity, 89% coverage

NCU05683 dihydroxy-acid dehydratase from Neurospora crassa OR74A
30% identity, 87% coverage

Q64PS6 Dihydroxy-acid dehydratase from Bacteroides fragilis (strain YCH46)
31% identity, 92% coverage

Q5L9I8 Dihydroxy-acid dehydratase from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)
31% identity, 89% coverage

BU600 dihydroxy-acid dehydratase from Buchnera aphidicola str. APS (Acyrthosiphon pisum)
30% identity, 83% coverage

MSMEG_0482 dihydroxy-acid dehydratase from Mycobacterium smegmatis str. MC2 155
32% identity, 94% coverage

edd / CAE53634.1 6-phosphogluconate dehydratase from Nonomuraea gerenzanensis (see paper)
32% identity, 77% coverage

Rmet_5802 phosphogluconate dehydratase from Cupriavidus metallidurans CH34
31% identity, 80% coverage

Rmet_5802 phosphogluconate dehydratase from Ralstonia metallidurans CH34
31% identity, 70% coverage

YjhG / b4297 KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
yjhG / P39358 KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli (strain K12) (see 7 papers)
YJHG_ECOLI / P39358 D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli (strain K12) (see 2 papers)
P39358 xylonate dehydratase (EC 4.2.1.82) from Escherichia coli (see paper)
yjhG / RF|NP_418717 uncharacterized protein yjhG from Escherichia coli K12 (see paper)
b4297 KpLE2 phage-like element; predicted dehydratase from Escherichia coli str. K-12 substr. MG1655
NP_418717 D-xylonate dehydratase from Escherichia coli str. K-12 substr. MG1655
32% identity, 67% coverage

PMI2760 6-phosphogluconate dehydratase from Proteus mirabilis HI4320
29% identity, 79% coverage

Q1PAG1 phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis (see paper)
29% identity, 80% coverage

RHA1_ro02368 phosphogluconate dehydratase from Rhodococcus sp. RHA1
29% identity, 79% coverage

Pput_1048 phosphogluconate dehydratase from Pseudomonas putida F1
PP1010, PP_1010 6-phosphogluconate dehydratase from Pseudomonas putida KT2440
29% identity, 80% coverage

PPUBIRD1_1060 phosphogluconate dehydratase from Pseudomonas putida BIRD-1
29% identity, 80% coverage

H16_B2567 phosphogluconate dehydratase from Cupriavidus necator H16
H16_B2567 phosphogluconate dehydratase from Ralstonia eutropha H16
29% identity, 81% coverage

YagF / b0269 CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
yagF / P77596 CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli (strain K12) (see 4 papers)
YAGF_ECOLI / P77596 D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli (strain K12) (see 2 papers)
b0269 CP4-6 prophage; predicted dehydratase from Escherichia coli str. K-12 substr. MG1655
32% identity, 64% coverage

IYO_006345 phosphogluconate dehydratase from Pseudomonas syringae pv. actinidiae ICMP 18884
29% identity, 80% coverage

CC2055 phosphogluconate dehydratase from Caulobacter crescentus CB15
CCNA_02134 phosphogluconate dehydratase from Caulobacter crescentus NA1000
28% identity, 86% coverage

SO2487 6-phosphogluconate dehydratase from Shewanella oneidensis MR-1
SO_2487, WP_011072452 phosphogluconate dehydratase from Shewanella oneidensis MR-1
29% identity, 81% coverage

SF5M90T_1806 phosphogluconate dehydratase from Shigella flexneri 5a str. M90T
29% identity, 81% coverage

Edd / b1851 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli K-12 substr. MG1655 (see 30 papers)
edd / P0ADF6 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli (strain K12) (see 29 papers)
EDD_ECOLI / P0ADF6 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli (strain K12) (see 4 papers)
edd / RF|NP_416365 phosphogluconate dehydratase from Escherichia coli K12 (see 2 papers)
b1851 phosphogluconate dehydratase from Escherichia coli str. K-12 substr. MG1655
29% identity, 81% coverage

KVU_PB0156 phosphogluconate dehydratase from Ketogulonicigenium vulgare WSH-001
32% identity, 82% coverage

ABBFA_003050 phosphogluconate dehydratase from Acinetobacter baumannii AB307-0294
29% identity, 79% coverage

edd / AAA23722.1 6-phosphogluconate dehydratase from Escherichia coli (see paper)
29% identity, 81% coverage

A1S_0483 phosphogluconate dehydratase from Acinetobacter baumannii ATCC 17978
29% identity, 85% coverage

Snov_3400 phosphogluconate dehydratase from Ancylobacter novellus DSM 506
30% identity, 77% coverage

SACE_1740 phosphogluconate dehydratase from Saccharopolyspora erythraea NRRL 2338
28% identity, 79% coverage

JHW33_RS05140 phosphogluconate dehydratase from Rahnella aceris
28% identity, 81% coverage

BCAL3367 phosphogluconate dehydratase from Burkholderia cenocepacia J2315
28% identity, 79% coverage

ACIAD0542 phosphogluconate dehydratase (6-phosphogluconate dehydratase) from Acinetobacter sp. ADP1
29% identity, 78% coverage

EIO_3349 phosphogluconate dehydratase from Ketogulonicigenium vulgare Y25
31% identity, 81% coverage

jhp1026 PHOSPHOGLUCONATE DEHYDRATASE from Helicobacter pylori J99
28% identity, 80% coverage

MSMEG_0313 phosphogluconate dehydratase from Mycobacterium smegmatis str. MC2 155
29% identity, 82% coverage

CtCNB1_3428 6-phosphogluconate dehydratase from Comamonas testosteroni CNB-2
27% identity, 79% coverage

lpp0485 hypothetical protein from Legionella pneumophila str. Paris
29% identity, 79% coverage

BPSL2932 phosphogluconate dehydratase from Burkholderia pseudomallei K96243
28% identity, 79% coverage

G4234_18415 phosphogluconate dehydratase from Serratia marcescens
29% identity, 82% coverage

P56111 Phosphogluconate dehydratase from Helicobacter pylori (strain ATCC 700392 / 26695)
HP1100 6-phosphogluconate dehydratase from Helicobacter pylori 26695
28% identity, 80% coverage

HPG27_RS05450 phosphogluconate dehydratase from Helicobacter pylori G27
28% identity, 80% coverage

Mal48_25960 YjhG/YagF family D-xylonate dehydratase from Thalassoglobus polymorphus
33% identity, 64% coverage

EDD_ZYMMO / P21909 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see paper)
ZZ6_0880 phosphogluconate dehydratase from Zymomonas mobilis subsp. mobilis ATCC 29191
ZMO0368 phosphogluconate dehydratase from Zymomonas mobilis subsp. mobilis ZM4
27% identity, 82% coverage

PA3194 phosphogluconate dehydratase from Pseudomonas aeruginosa PAO1
PA14_22910 6-phosphogluconate dehydratase from Pseudomonas aeruginosa UCBPP-PA14
27% identity, 80% coverage

Atu0598 phosphogluconate dehydratase from Agrobacterium tumefaciens str. C58 (Cereon)
27% identity, 81% coverage

GOX0431 Phosphogluconate dehydratase from Gluconobacter oxydans 621H
28% identity, 76% coverage

Mal4_05000 YjhG/YagF family D-xylonate dehydratase from Maioricimonas rarisocia
32% identity, 67% coverage

Dshi_1769 6-phosphogluconate dehydratase from Dinoroseobacter shibae DFL 12
29% identity, 78% coverage

VIBHAR_00512 phosphogluconate dehydratase from Vibrio harveyi ATCC BAA-1116
31% identity, 70% coverage

WP_013934127 phosphogluconate dehydratase from Zymomonas mobilis subsp. pomaceae
27% identity, 82% coverage

RD1_2879 phosphogluconate dehydratase from Roseobacter denitrificans OCh 114
27% identity, 78% coverage

HELO_3628 phosphogluconate dehydratase from Halomonas elongata DSM 2581
28% identity, 77% coverage

C7W88_RS12360 phosphogluconate dehydratase from Novosphingobium sp. THN1
29% identity, 81% coverage

XOC_2610 phosphogluconate dehydratase from Xanthomonas oryzae pv. oryzicola BLS256
28% identity, 77% coverage

RL0751 putative phosphogluconate dehydratase from Rhizobium leguminosarum bv. viciae 3841
28% identity, 76% coverage

H16_A1178 phosphogluconate dehydratase from Ralstonia eutropha H16
H16_A1178 phosphogluconate dehydratase from Cupriavidus necator H16
28% identity, 78% coverage

HWN72_12855 phosphogluconate dehydratase from Novosphingobium sp. HR1a
28% identity, 78% coverage

BMEII0511 PHOSPHOGLUCONATE DEHYDRATASE from Brucella melitensis 16M
26% identity, 81% coverage

BAB2_0458 Dihydroxy-acid and 6-phosphogluconate dehydratase:6-phosphogluconate dehydratase from Brucella melitensis biovar Abortus 2308
26% identity, 81% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 784,739 different protein sequences to 1,253,012 scientific articles. Searches against EuropePMC were last performed on November 25 2024.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory