PaperBLAST – Find papers about a protein or its homologs

 

PaperBLAST

PaperBLAST Hits for reanno::pseudo13_GW456_L13:PfGW456L13_1170 5-aminopentanamidase (EC 3.5.1.30) (Pseudomonas fluorescens GW456-L13) (264 a.a., MRVALYQCPP...)

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Predict protein localization: PSORTb

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Found 250 similar proteins in the literature:

PfGW456L13_1170 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens GW456-L13
100% identity, 100% coverage

Pf1N1B4_2504 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens FW300-N1B4
93% identity, 100% coverage

AO353_07425 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens FW300-N2E3
87% identity, 100% coverage

Pf6N2E2_4777 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens FW300-N2E2
83% identity, 100% coverage

AO356_14225 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens FW300-N2C3
82% identity, 100% coverage

PSPTO0517 hydrolase, carbon-nitrogen family from Pseudomonas syringae pv. tomato str. DC3000
69% identity, 99% coverage

B3IVI7 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida (see 4 papers)
66% identity, 98% coverage

davA / Q88QV2 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
Q88QV2 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida (see paper)
PP0382 carbon-nitrogen hydrolase family protein from Pseudomonas putida KT2440
PP_0382 carbon-nitrogen hydrolase family protein from Pseudomonas putida KT2440
65% identity, 98% coverage

SGR_6069 / B1W481 4-guanidinobutanamidase (EC 3.5.1.4) from Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) (see 2 papers)
52% identity, 99% coverage

A0A088BHP3 aryl-acylamidase (EC 3.5.1.13); amidase (EC 3.5.1.4) from Streptomyces sp. (see paper)
43% identity, 97% coverage

WH5701_10155 hypothetical protein from Synechococcus sp. WH 5701
38% identity, 78% coverage

PA3598 hypothetical protein from Pseudomonas aeruginosa PAO1
37% identity, 96% coverage

C6K3Z5 amidase (EC 3.5.1.4) from Nesterenkonia sp. (see paper)
35% identity, 98% coverage

YP_184329 carbon-nitrogen hydrolase from Thermococcus kodakaraensis KOD1
35% identity, 98% coverage

ZP_01666349 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Thermosinus carboxydivorans Nor1
35% identity, 98% coverage

F8AEP0 amidase (EC 3.5.1.4) from Pyrococcus yayanosii (see paper)
35% identity, 98% coverage

ramA / Q75SP7 (R)-amidase (EC 3.5.1.100) from Pseudomonas sp. (see paper)
RSAM_PSESP / Q75SP7 (R)-stereoselective amidase; EC 3.5.1.100 from Pseudomonas sp. (see paper)
Q75SP7 (R)-amidase (EC 3.5.1.100) from Pseudomonas sp. (see paper)
37% identity, 95% coverage

4iztA / D0VWZ1 The e41q mutant of the amidase from nesterenkonia sp. An1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
35% identity, 98% coverage

MSMEG_6733 hydrolase, carbon-nitrogen family protein from Mycobacterium smegmatis str. MC2 155
35% identity, 97% coverage

PP3846, PP_3846 carbon-nitrogen hydrolase family protein from Pseudomonas putida KT2440
37% identity, 96% coverage

YCU9_SCHPO / O59829 Probable nitrilase C965.09; EC 3.5.-.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
34% identity, 95% coverage

mtnU / O31664 2-oxoglutaramate:glutamine aminotransferase (EC 3.5.1.3) from Bacillus subtilis (strain 168) (see 4 papers)
MTNU_BACSU / O31664 2-oxoglutaramate amidase; EC 3.5.1.111 from Bacillus subtilis (strain 168) (see 2 papers)
34% identity, 88% coverage

sll1640 hypothetical protein from Synechocystis sp. PCC 6803
31% identity, 81% coverage

3klcA / Q9UYV8 Crystal structure of hyperthermophilic nitrilase (see paper)
33% identity, 98% coverage

NITR_PYRAB / Q9UYV8 Nitrilase; PaNit; EC 3.5.5.1 from Pyrococcus abyssi (strain GE5 / Orsay) (see 2 papers)
33% identity, 98% coverage

PH0642 hypothetical protein from Pyrococcus horikoshii OT3
32% identity, 98% coverage

Q9XA70 Hydrolase from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
35% identity, 88% coverage

6ypaB / O58376 The c146a variant of an amidase from pyrococcus horikoshii with bound glutaramide
32% identity, 96% coverage

pydC / Q846U4 3-amino-isobutyrate synthase (EC 3.5.1.6) from Brevibacillus agri (see paper)
30% identity, 86% coverage

NIT1_MOUSE / Q8VDK1 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; EC 3.5.1.128 from Mus musculus (Mouse) (see 7 papers)
Q8VDK1 deaminated glutathione amidase (EC 3.5.1.128) from Mus musculus (see paper)
34% identity, 76% coverage

ZMO1439 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Zymomonas mobilis subsp. mobilis ZM4
35% identity, 96% coverage

YP_001306296 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Thermosipho melanesiensis BI429
30% identity, 99% coverage

NP_991174 omega-amidase NIT2 from Danio rerio
34% identity, 86% coverage

Ta1208 nitrilase related protein from Thermoplasma acidophilum DSM 1728
32% identity, 97% coverage

Q7TQ94 Deaminated glutathione amidase from Rattus norvegicus
34% identity, 75% coverage

CDR20291_2626 putative carbon-nitrogen hydrolase from Clostridium difficile R20291
29% identity, 95% coverage

Q4VBV9 Omega-amidase NIT2 from Danio rerio
34% identity, 88% coverage

CD2737 putative carbon-nitrogen hydrolase from Clostridium difficile 630
28% identity, 95% coverage

jhp0294 putative from Helicobacter pylori J99
31% identity, 87% coverage

A3DHT2 nitrilase (EC 3.5.5.1) from Acetivibrio thermocellus (see paper)
32% identity, 99% coverage

HP0309 conserved hypothetical protein from Helicobacter pylori 26695
O25079 CN hydrolase domain-containing protein from Helicobacter pylori (strain ATCC 700392 / 26695)
31% identity, 88% coverage

Q635P5 Hydrolase, carbon-nitrogen family from Bacillus cereus (strain ZK / E33L)
31% identity, 98% coverage

XAC2303 beta-alanine synthetase from Xanthomonas axonopodis pv. citri str. 306
32% identity, 80% coverage

BAS3944 hydrolase, carbon-nitrogen family from Bacillus anthracis str. Sterne
BA4253 hydrolase, carbon-nitrogen family from Bacillus anthracis str. Ames
31% identity, 98% coverage

ZMO1370 N-carbamoylputrescine amidase from Zymomonas mobilis subsp. mobilis ZM4
32% identity, 89% coverage

D1O36_02385 carbon-nitrogen family hydrolase from Streptococcus thermophilus
30% identity, 98% coverage

NIT1_HUMAN / Q86X76 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; EC 3.5.1.128 from Homo sapiens (Human) (see paper)
34% identity, 80% coverage

SCA_1544 carbon-nitrogen family hydrolase from Staphylococcus carnosus subsp. carnosus TM300
Sca_1544 hypothetical protein from Staphylococcus carnosus subsp. carnosus TM300
28% identity, 97% coverage

LT85_RS01660 deaminated glutathione amidase from Collimonas arenae
32% identity, 91% coverage

YP_001244336 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Thermotoga petrophila RKU-1
31% identity, 88% coverage

NIT2_RAT / Q497B0 Omega-amidase NIT2; Nitrilase homolog 2; EC 3.5.1.3 from Rattus norvegicus (Rat) (see 2 papers)
NP_001029298 omega-amidase NIT2 from Rattus norvegicus
30% identity, 89% coverage

PA2074 hypothetical protein from Pseudomonas aeruginosa PAO1
33% identity, 89% coverage

CG712_RS08380 carbon-nitrogen family hydrolase from Streptococcus thermophilus
31% identity, 98% coverage

B7Z410 cDNA FLJ50791, highly similar to Nitrilase homolog 1 from Homo sapiens
33% identity, 83% coverage

Nit2 / Q9JHW2 ω-amidase NIT2 monomer (EC 3.5.1.3) from Mus musculus (see 2 papers)
NIT2_MOUSE / Q9JHW2 Omega-amidase NIT2; Nitrilase homolog 2; EC 3.5.1.3 from Mus musculus (Mouse) (see 3 papers)
NP_075664 omega-amidase NIT2 from Mus musculus
30% identity, 87% coverage

F1SKY2 Omega-amidase NIT2 from Sus scrofa
30% identity, 85% coverage

W6QZD7 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
34% identity, 92% coverage

XIS1_460110 amidohydrolase from Xenorhabdus innexi
30% identity, 97% coverage

G1TXN1 Omega-amidase NIT2 from Oryctolagus cuniculus
30% identity, 89% coverage

NIT2_HUMAN / Q9NQR4 Omega-amidase NIT2; Nitrilase homolog 2; EC 3.5.1.3 from Homo sapiens (Human) (see 4 papers)
Q9NQR4 omega-amidase (EC 3.5.1.3) from Homo sapiens (see paper)
NP_064587 omega-amidase NIT2 from Homo sapiens
29% identity, 89% coverage

glr1682 probable hydratase from Gloeobacter violaceus PCC 7421
31% identity, 88% coverage

SerAS9_4277 amidohydrolase from Serratia plymuthica AS9
31% identity, 95% coverage

MSMEG_0571 hydrolase, carbon-nitrogen family protein from Mycobacterium smegmatis str. MC2 155
32% identity, 84% coverage

SCO6414 hypothetical protein from Streptomyces coelicolor A3(2)
29% identity, 84% coverage

Fisuc_2975 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Fibrobacter succinogenes subsp. succinogenes S85
31% identity, 87% coverage

YP_002730079 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Persephonella marina EX-H1
31% identity, 84% coverage

Q10166 Hydrolase C26A3.11 from Schizosaccharomyces pombe (strain 972 / ATCC 24843)
30% identity, 77% coverage

PAE2075 nitrilase, conjectural from Pyrobaculum aerophilum str. IM2
31% identity, 99% coverage

VpaChn25_1373 N-carbamoylputrescine amidase from Vibrio parahaemolyticus
31% identity, 87% coverage

STM0308 putative amidohydrolase from Salmonella typhimurium LT2
33% identity, 85% coverage

PFLU5051 putative hydrolase from Pseudomonas fluorescens SBW25
34% identity, 85% coverage

NIT3_YEAST / P49954 Omega-amidase NIT3; Nitrilase homolog 2; EC 3.5.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
YLR351C Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member from Saccharomyces cerevisiae
30% identity, 90% coverage

PG0143 hydrolase, carbon-nitrogen family from Porphyromonas gingivalis W83
29% identity, 90% coverage

ORF77 / Q93NG1 2-ketoglutaramate amidase monomer (EC 3.5.1.3) from Paenarthrobacter nicotinovorans (see 2 papers)
NIT_PAENI / Q93NG1 2-oxoglutaramate amidase; Omega-amidase; EC 3.5.1.111 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
Q93NG1 2-oxoglutaramate amidase (EC 3.5.1.111) from Paenarthrobacter nicotinovorans (see paper)
30% identity, 84% coverage

y3324 hypothetical from Yersinia pestis KIM
YPO0938 putative carbon-nitrogen hydrolase from Yersinia pestis CO92
29% identity, 85% coverage

YAFV_ECOBD / A0A140NDS5 Omega-amidase YafV; ecYafV; EC 3.5.1.3 from Escherichia coli (strain B / BL21-DE3) (see paper)
33% identity, 85% coverage

Q84FR7 N-carbamoyl-D-amino-acid hydrolase (EC 3.5.1.77) from Arthrobacter crystallopoietes (see paper)
29% identity, 77% coverage

D7B8P3 nitrilase (EC 3.5.5.1) from Nocardiopsis dassonvillei ATCC 23218 (see paper)
32% identity, 73% coverage

YafV / b0219 2-oxoglutaramate amidase (EC 3.5.1.3; EC 3.5.1.111) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yafV / Q47679 2-oxoglutaramate amidase (EC 3.5.1.3) from Escherichia coli (strain K12) (see paper)
33% identity, 85% coverage

SF0269 putative EC 3.5. amidase-type enzyme from Shigella flexneri 2a str. 301
S0290 putative EC 3.5. amidase-type enzyme from Shigella flexneri 2a str. 2457T
33% identity, 85% coverage

aguB / Q9I6J8 N-carbamoylputrascine amidohydrolase subunit (EC 3.5.1.53) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
PA14_03830 N-carbamoylputrescine amidohydrolase from Pseudomonas aeruginosa UCBPP-PA14
PA0293 N-carbamoylputrescine amidohydrolase from Pseudomonas aeruginosa PAO1
28% identity, 86% coverage

At2g27450 / Q8VYF5 At2g27450-monomer (EC 3.5.1.53) from Arabidopsis thaliana (see paper)
NILP1_ARATH / Q8VYF5 N-carbamoylputrescine amidase; Nitrilase-like protein 1; EC 3.5.1.53 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G27450 NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds from Arabidopsis thaliana
28% identity, 83% coverage

AGUB_SOLLC / Q9XGI9 N-carbamoylputrescine amidase; EC 3.5.1.53 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
30% identity, 83% coverage

SCO6411 hydrolase from Streptomyces coelicolor A3(2)
31% identity, 72% coverage

NILP3_ARATH / Q8RUF8 Omega-amidase, chloroplastic; Nitrilase-like protein 3; EC 3.5.1.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q8RUF8 omega-amidase (EC 3.5.1.3) from Arabidopsis thaliana (see paper)
AT5G12040, NP_196765 carbon-nitrogen hydrolase family protein from Arabidopsis thaliana
32% identity, 62% coverage

tlr0112 ORF_ID:tlr0112~probable hydrolase from Thermosynechococcus elongatus BP-1
31% identity, 87% coverage

VP0634 hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
31% identity, 45% coverage

YAFV_STAA4 / P0DP65 Omega-amidase YafV; saYafV; EC 3.5.1.3 from Staphylococcus aureus (strain 04-02981) (see paper)
SA1841 hypothetical protein from Staphylococcus aureus subsp. aureus N315
28% identity, 91% coverage

GM298_10355 amidohydrolase from Enterobacter sp. HSTU-ASh6
33% identity, 85% coverage

P55177 Hydrolase in agr operon from Staphylococcus aureus
USA300HOU_2029 amidohydrolase from Staphylococcus aureus subsp. aureus USA300_TCH1516
WP_000867960 carbon-nitrogen family hydrolase from Staphylococcus aureus
29% identity, 91% coverage

Syncc9902_1323 possible nitrilase from Synechococcus sp. CC9902
30% identity, 84% coverage

PADG_11833 uncharacterized protein from Paracoccidioides brasiliensis Pb18
31% identity, 84% coverage

H2MN42 omega-amidase from Oryzias latipes
31% identity, 89% coverage

WP_003405206 carbon-nitrogen hydrolase family protein from Clostridium botulinum
30% identity, 75% coverage

CG8132 uncharacterized protein from Drosophila melanogaster
29% identity, 93% coverage

SP_0922 carbon-nitrogen hydrolase family protein from Streptococcus pneumoniae TIGR4
29% identity, 86% coverage

RS9917_11395 possible nitrilase from Synechococcus sp. RS9917
32% identity, 86% coverage

MSMEG_3555 hydrolase from Mycobacterium smegmatis str. MC2 155
29% identity, 72% coverage

Syncc9605_1134 possible nitrilase from Synechococcus sp. CC9605
31% identity, 86% coverage

5h8iC / G7ITU5 Crystal structure of medicago truncatula n-carbamoylputrescine amidohydrolase (mtcpa) in complex with n-(dihydroxymethyl)putrescine (see paper)
27% identity, 82% coverage

SYNW1008 Possible nitrilase from Synechococcus sp. WH 8102
32% identity, 86% coverage

BCAL3280 putative carbon-nitrogen hydrolase protein from Burkholderia cenocepacia J2315
31% identity, 89% coverage

WH7805_01902 Possible nitrilase from Synechococcus sp. WH 7805
31% identity, 86% coverage

YP_920845 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Thermofilum pendens Hrk 5
29% identity, 91% coverage

spr0823 Beta-alanine synthase or beta-ureidopropionase from Streptococcus pneumoniae R6
29% identity, 86% coverage

PSEEN1080 hydrolase, carbon-nitrogen hydrolase family from Pseudomonas entomophila L48
31% identity, 85% coverage

YP_001667192 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Pseudomonas putida GB-1
32% identity, 85% coverage

lpl0007 hypothetical protein from Legionella pneumophila str. Lens
30% identity, 84% coverage

Q8PXI9 nitrilase (EC 3.5.5.1) from Methanosarcina mazei (see paper)
31% identity, 80% coverage

TERTU_1871 N-carbamoylputrescine amidase from Teredinibacter turnerae T7901
31% identity, 77% coverage

PA3797 hypothetical protein from Pseudomonas aeruginosa PAO1
32% identity, 80% coverage

WH5701_10020 Possible nitrilase from Synechococcus sp. WH 5701
32% identity, 84% coverage

jhp0279 ALIPHATIC AMIDASE from Helicobacter pylori J99
30% identity, 63% coverage

PMN2A_0052 Possible nitrilase from Prochlorococcus marinus str. NATL2A
29% identity, 89% coverage

C0NHD9 Amidohydrolase from Ajellomyces capsulatus (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
30% identity, 84% coverage

YBEM_ECOBD / A0A140NCB4 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; ecYbeM; EC 3.5.1.128 from Escherichia coli (strain B / BL21-DE3) (see paper)
30% identity, 84% coverage

E1Q554 Aliphatic amidase from Helicobacter pylori (strain PeCan4)
30% identity, 63% coverage

UTI89_C0629 putative amidase from Escherichia coli UTI89
30% identity, 84% coverage

BFP66_RS06520 N-carbamoylputrescine amidase from Streptococcus suis
28% identity, 85% coverage

EY04_RS03865 carbon-nitrogen hydrolase family protein from Pseudomonas chlororaphis
31% identity, 83% coverage

P60327 N-carbamoyl-D-amino acid hydrolase from Agrobacterium sp. (strain KNK712)
30% identity, 76% coverage

AMIE_HELPY / O25067 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see 3 papers)
HPG27_RS01475 aliphatic amidase from Helicobacter pylori Hp A-11
HP0294 aliphatic amidase (aimE) from Helicobacter pylori 26695
HPG27_273 aliphatic amidase from Helicobacter pylori G27
30% identity, 63% coverage

W6QQZ6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
34% identity, 79% coverage

AMIE_PSEAE / P11436 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
P11436 amidase (EC 3.5.1.4) from Pseudomonas aeruginosa (see paper)
PA3366 aliphatic amidase from Pseudomonas aeruginosa PAO1
NP_252056 acylamide amidohydrolase from Pseudomonas aeruginosa PAO1
29% identity, 71% coverage

lpg0007 probable hydrolase from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
29% identity, 82% coverage

W6QQS6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
27% identity, 86% coverage

lpp0007 hypothetical protein from Legionella pneumophila str. Paris
29% identity, 84% coverage

VV2_0920 Predicted amidohydrolase from Vibrio vulnificus CMCP6
28% identity, 48% coverage

Pro1045 Nitrilase homolog from Prochlorococcus marinus str. SS120
31% identity, 84% coverage

PP0939 carbon-nitrogen hydrolase family protein from Pseudomonas putida KT2440
32% identity, 79% coverage

CJJ81176_0971 hydrolase, carbon-nitrogen family from Campylobacter jejuni subsp. jejuni 81-176
Cj0947c putative hydrolase from Campylobacter jejuni subsp. jejuni NCTC 11168
27% identity, 91% coverage

NFT1_CAEEL / O76463 Nitrilase and fragile histidine triad fusion protein NitFhit; EC 3.6.1.29; EC 3.5.-.- from Caenorhabditis elegans (see 2 papers)
30% identity, 56% coverage

HSUHS1_0888, HSUHS5_0231 aliphatic amidase from Helicobacter suis HS1
30% identity, 59% coverage

DCAS_ENSAD / Q5S260 N-carbamoyl-D-amino acid hydrolase; D-carbamoylase; EC 3.5.1.77 from Ensifer adhaerens (Sinorhizobium morelense) (see paper)
Q5S260 N-carbamoyl-D-amino-acid hydrolase (EC 3.5.1.77) from Ensifer adhaerens (see paper)
29% identity, 76% coverage

YP_003400513 Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase from Archaeoglobus profundus DSM 5631
32% identity, 85% coverage

C5XTG0 CN hydrolase domain-containing protein from Sorghum bicolor
30% identity, 82% coverage

YE3235 putative regulatory protein (methionine salvage) from Yersinia enterocolitica subsp. enterocolitica 8081
33% identity, 98% coverage

BCAM1315 aliphatic amidase (acylamide amidohydrolase) from Burkholderia cenocepacia J2315
31% identity, 65% coverage

A0A023XI92 N-carbamoyl-D-amino-acid hydrolase (EC 3.5.1.77) from Bradyrhizobium japonicum (see paper)
29% identity, 70% coverage

RLO149_c040080 formamidase from Roseobacter litoralis Och 149
29% identity, 69% coverage

aguB / A0A1J6PBK3 N-carbamoylputrescine amidohydrolase (EC 3.5.1.53) from Campylobacter jejuni (see paper)
27% identity, 91% coverage

8hpcC / P60327 Crystal structure of c171a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-hydroxyphenylglycine
29% identity, 76% coverage

tll0920 ORF_ID:tll0920~nitrilase homolog from Thermosynechococcus elongatus BP-1
31% identity, 77% coverage

Q93XI4 N-carbamoylputrescine amidase from Oryza sativa subsp. japonica
29% identity, 80% coverage

CYB_1181 hydrolase, carbon-nitrogen family from Synechococcus sp. JA-2-3B'a(2-13)
31% identity, 77% coverage

NIT1_SYNYG / P0DP66 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; syNit1; EC 3.5.1.128 from Synechocystis sp. (strain PCC 6803 / GT-S) (see paper)
P0DP66 deaminated glutathione amidase (EC 3.5.1.128) from Synechocystis sp. PCC 6803 (see paper)
sll0601 hypothetical protein from Synechocystis sp. PCC 6803
31% identity, 82% coverage

PP0859 carbon-nitrogen hydrolase family protein from Pseudomonas putida KT2440
31% identity, 85% coverage

D2SGH7 nitrilase (EC 3.5.5.1) from Geodermatophilus obscurus (see paper)
31% identity, 96% coverage

SS1G_09546 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
26% identity, 75% coverage

VV1_1455 Predicted amidohydrolase from Vibrio vulnificus CMCP6
28% identity, 92% coverage

A4I2F5 Putative nitrilase from Leishmania infantum
29% identity, 87% coverage

M1C5D1 Nitrilase and fragile histidine triad fusion protein from Solanum tuberosum
30% identity, 85% coverage

F2DZ92 Predicted protein from Hordeum vulgare subsp. vulgare
30% identity, 74% coverage

MAB_2545c Hypothetical nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Mycobacterium abscessus ATCC 19977
29% identity, 71% coverage

EHI_035680 hydrolase, carbon-nitrogen family from Entamoeba histolytica HM-1:IMSS
30% identity, 80% coverage

PMM0615 Possible nitrilase from Prochlorococcus marinus sp. MED4
29% identity, 65% coverage

AMIE_BACSP / Q9L543 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Bacillus sp. (see paper)
30% identity, 66% coverage

RL4288 putative amidohydrolase from Rhizobium leguminosarum bv. viciae 3841
33% identity, 82% coverage

YAFV_YEREN / P0DP67 Omega-amidase YafV; yeYafV; EC 3.5.1.3 from Yersinia enterocolitica (see paper)
33% identity, 94% coverage

SERP1488 hydrolase, carbon-nitrogen family from Staphylococcus epidermidis RP62A
26% identity, 87% coverage

PMT0395 Possible nitrilase from Prochlorococcus marinus str. MIT 9313
29% identity, 86% coverage

Q19437 beta-ureidopropionase (EC 3.5.1.6) from Caenorhabditis elegans (see paper)
28% identity, 52% coverage

AMIE_RHOER / Q01360 Aliphatic amidase; Acylamide amidohydrolase; Wide spectrum amidase; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus)
31% identity, 66% coverage

Q9HVU6 deaminated glutathione amidase (EC 3.5.1.128) from Pseudomonas aeruginosa (see paper)
PA4475 hypothetical protein from Pseudomonas aeruginosa PAO1
33% identity, 85% coverage

NFT1_DROME / O76464 Nitrilase and fragile histidine triad fusion protein NitFhit; NFT-1 protein; EC 3.6.1.29; EC 3.5.-.- from Drosophila melanogaster (Fruit fly) (see paper)
31% identity, 50% coverage

PXO_06060 hydrolase, carbon-nitrogen family from Xanthomonas oryzae pv. oryzae PXO99A
32% identity, 80% coverage

Afu6g13230 nitrilase family protein (Nit3), putative from Aspergillus fumigatus Af293
29% identity, 85% coverage

PSF113_2053 aliphatic amidase from Pseudomonas ogarae
30% identity, 63% coverage

5khaA / V5VHL3 Structure of glutamine-dependent NAD+ synthetase from acinetobacter baumannii in complex with adenosine diphosphate (adp)
26% identity, 45% coverage

TERTU_3348 hydrolase, carbon-nitrogen family from Teredinibacter turnerae T7901
28% identity, 45% coverage

B0V8W9 NAD+ synthase (glutamine-hydrolysing) (EC 6.3.5.1) from Acinetobacter baumannii (see paper)
ABAYE2955 putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase [glutamine-hydrolyzing]) (NadE) from Acinetobacter baumannii AYE
ABBFA_002755 Probable glutamine-dependent NAD(+) synthetase from Acinetobacter baumannii AB307-0294
HMPREF0010_01353 NAD+ synthase from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
26% identity, 44% coverage

4gylA / Q9L543 The e142l mutant of the amidase from geobacillus pallidus showing the result of michael addition of acrylamide at the active site cysteine (see paper)
30% identity, 67% coverage

PMT9312_0615 nitrilase-like from Prochlorococcus marinus str. MIT 9312
29% identity, 86% coverage

NP_649732 pyd3 from Drosophila melanogaster
29% identity, 53% coverage

MSMEG_0566 aliphatic amidase from Mycobacterium smegmatis str. MC2 155
30% identity, 81% coverage

A9762_26525 carbon-nitrogen hydrolase family protein from Pandoraea sp. ISTKB
30% identity, 83% coverage

B8A2V8 omega-amidase (EC 3.5.1.3) from Zea mays (see paper)
29% identity, 65% coverage

A4HF72 Nitrilase from Leishmania braziliensis
29% identity, 87% coverage

blr0973 amidase from Bradyrhizobium japonicum USDA 110
29% identity, 70% coverage

ctu / Q5NHL7 citrullinase (EC 3.5.1.20) from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) (see paper)
CTU_FRATT / Q5NHL7 Citrullinase; Citrulline ureidase; CTU; EC 3.5.1.20 from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) (see paper)
Q5NHL7 citrullinase (EC 3.5.1.20) from Francisella tularensis subsp. tularensis (see paper)
FTT_0435 carbon-nitrogen hydrolase family protein from Francisella tularensis subsp. tularensis SCHU S4
29% identity, 86% coverage

YPTB0872 putative amidase-type enzyme from Yersinia pseudotuberculosis IP 32953
32% identity, 81% coverage

CNAG_02920 hydrolase from Cryptococcus neoformans var. grubii H99
27% identity, 74% coverage

NILP2_ARATH / Q94JV5 Deaminated glutathione amidase, chloroplastic/cytosolic; dGSH amidase; Nitrilase-like protein 2; Protein nitrilase 1 homolog; AtNit1; Protein Nit1 homolog; EC 3.5.1.128 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Q94JV5 deaminated glutathione amidase (EC 3.5.1.128) from Arabidopsis thaliana (see paper)
AT4G08790 nitrilase, putative from Arabidopsis thaliana
29% identity, 80% coverage

B8A0E5 omega-amidase (EC 3.5.1.3) from Zea mays (see paper)
29% identity, 64% coverage

B8C1M9 nitrilase (EC 3.5.5.1) from Thalassiosira pseudonana (see paper)
XP_002290043 nitrilase from Thalassiosira pseudonana CCMP1335
26% identity, 80% coverage

MSMEG_3403 formamidase from Mycobacterium smegmatis str. MC2 155
27% identity, 70% coverage

CwatDRAFT_4111 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Crocosphaera watsonii WH 8501
31% identity, 76% coverage

NMB0441 nitrilase from Neisseria meningitidis MC58
30% identity, 81% coverage

XP_002289996 aliphatic amidase from Thalassiosira pseudonana CCMP1335
27% identity, 65% coverage

P59701 formamidase (EC 3.5.1.49) from Bacillus cereus (see paper)
25% identity, 67% coverage

BAS3851 hydrolase, carbon-nitrogen family from Bacillus anthracis str. Sterne
GBAA_4149 formamidase from Bacillus anthracis str. 'Ames Ancestor'
27% identity, 61% coverage

YHCX_BACSU / P54608 Probable hydrolase YhcX; EC 3.5.-.- from Bacillus subtilis (strain 168) (see paper)
29% identity, 44% coverage

W6QY63 Formamidase from Pseudomonas pseudoalcaligenes (strain CECT 5344)
27% identity, 63% coverage

RCF35_09895, V529_08860 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein from Bacillus velezensis
28% identity, 44% coverage

AS588_RS10830 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein from Bacillus amyloliquefaciens
28% identity, 44% coverage

K4AC07 CN hydrolase domain-containing protein from Setaria italica
28% identity, 65% coverage

cg3093 carbon-nitrogen hydrolase from Corynebacterium glutamicum ATCC 13032
29% identity, 92% coverage

AMIE_GEOSE / Q9RQ17 Aliphatic amidase; Acylamide amidohydrolase; Wide spectrum amidase; EC 3.5.1.4 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
28% identity, 66% coverage

alr2001 nitrilase homolog from Nostoc sp. PCC 7120
30% identity, 82% coverage

RLO149_c028370 aliphatic amidase from Roseobacter litoralis Och 149
29% identity, 65% coverage

XHV734_1262 NAD+ synthase from Xanthomonas hortorum pv. vitians
29% identity, 42% coverage

YP_425830 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Rhodospirillum rubrum ATCC 11170
34% identity, 57% coverage

B7G8X8 Aliphatic amidase from Phaeodactylum tricornutum (strain CCAP 1055/1)
31% identity, 55% coverage

D2VT95 Predicted protein from Naegleria gruberi
26% identity, 44% coverage

Bd0943 putative amidohydrolase from Bdellovibrio bacteriovorus HD100
34% identity, 49% coverage

Ava_5061 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase from Anabaena variabilis ATCC 29413
30% identity, 86% coverage

SEN2976 possible hydrolase from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
27% identity, 81% coverage

NADE_ACIAD / Q6F8K4 Glutamine-dependent NAD(+) synthetase; NAD synthetase; NAD(+) synthase [glutamine-hydrolyzing]; EC 6.3.5.1 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) (see paper)
ACIAD2888 putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase [glutamine-hydrolyzing]) (NadE) from Acinetobacter sp. ADP1
26% identity, 44% coverage

NCU05757 nitrilase from Neurospora crassa OR74A
31% identity, 89% coverage

Q5KR04 N-carbamoylputrescine amidase (EC 3.5.1.53) from Selenomonas ruminantium (see paper)
26% identity, 85% coverage

Rv0480c POSSIBLE AMIDOHYDROLASE from Mycobacterium tuberculosis H37Rv
P9WJ01 Hydrolase Rv0480c from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
32% identity, 89% coverage

NP_001172021 deaminated glutathione amidase isoform 2 from Homo sapiens
34% identity, 59% coverage

O25452 Beta-alanine synthetase homolog from Helicobacter pylori (strain ATCC 700392 / 26695)
HP0757 beta-alanine synthetase homolog from Helicobacter pylori 26695
27% identity, 70% coverage

SS1G_14415 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
29% identity, 82% coverage

LOC100162330 beta-ureidopropionase from Acyrthosiphon pisum
27% identity, 52% coverage

YP2544 putative glutamine-dependent NAD from Yersinia pestis biovar Medievalis str. 91001
28% identity, 39% coverage

STM3133 putative amidohydrolase from Salmonella typhimurium LT2
27% identity, 81% coverage

BAbS19_I17580 nitrilase/cyanide hydratase/apolipoprotein N-acyltransferase from Brucella abortus S19
31% identity, 85% coverage

SS1G_13215 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
27% identity, 80% coverage

jhp0694 putative from Helicobacter pylori J99
25% identity, 70% coverage

4hg3A / P47016 Structural insights into yeast nit2: wild-type yeast nit2 in complex with alpha-ketoglutarate (see paper)
26% identity, 81% coverage

TERTU_3828 hydrolase, carbon-nitrogen family from Teredinibacter turnerae T7901
33% identity, 53% coverage

NIT2_YEAST / P47016 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; EC 3.5.1.128 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
P47016 deaminated glutathione amidase (EC 3.5.1.128) from Saccharomyces cerevisiae (see paper)
YJL126W Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member from Saccharomyces cerevisiae
NP_012409 putative hydrolase from Saccharomyces cerevisiae S288C
26% identity, 80% coverage

TERTU_0619 hydrolase, carbon-nitrogen family from Teredinibacter turnerae T7901
29% identity, 82% coverage

Q16TC0 Uncharacterized protein from Aedes aegypti
25% identity, 52% coverage

F1YUN4 Formamidase from Acetobacter pomorum DM001
24% identity, 72% coverage

XC_1067 NH3-dependent NAD synthetase from Xanthomonas campestris pv. campestris str. 8004
30% identity, 36% coverage

A0A0E3D8K7 nitrilase (EC 3.5.5.1); Aliphatic nitrilase (EC 3.5.5.7) from Fusarium proliferatum (see paper)
28% identity, 78% coverage

NIT1_YEREN / P0DP68 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; yeNit1; EC 3.5.1.128 from Yersinia enterocolitica (see paper)
P0DP68 deaminated glutathione amidase (EC 3.5.1.128) from Yersinia enterocolitica (see paper)
30% identity, 63% coverage

Q0PIV8 nitrilase (EC 3.5.5.1) from Aeribacillus pallidus (see 2 papers)
24% identity, 76% coverage

HSUHS1_0680, HSUHS5_0265 formamidase from Helicobacter suis HS5
23% identity, 70% coverage

A8HPY4 Uncharacterized protein from Chlamydomonas reinhardtii
25% identity, 51% coverage

AMIF_HELPY / O25836 Formamidase; Formamide amidohydrolase; EC 3.5.1.49 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see 2 papers)
HP1238 aliphatic amidase (aimE) from Helicobacter pylori 26695
24% identity, 70% coverage

y0194 putative carbon-nitrogen hydrolase from Yersinia pestis KIM
31% identity, 63% coverage

BCIN_14g01750 Bcnit3 from Botrytis cinerea B05.10
25% identity, 84% coverage

Afu6g12100 nitrilase family protein from Aspergillus fumigatus Af293
29% identity, 70% coverage

C289_2552 carbon-nitrogen hydrolase family protein from Anoxybacillus ayderensis
24% identity, 80% coverage

XP_415242 beta-ureidopropionase from Gallus gallus
25% identity, 68% coverage

HPG27_RS06200 formamidase from Helicobacter pylori G27
23% identity, 70% coverage

Q7T395 Beta-ureidopropionase from Danio rerio
26% identity, 52% coverage

idhX / AAC43641.1 idhX from Sphingobium yanoikuyae (see paper)
32% identity, 32% coverage

NIT_AURST / A0A0P1DJE3 Arylacetonitrilase; NitAd; EC 3.5.5.1; EC 3.5.5.5 from Auricularia subglabra (strain TFB-10046 / SS5) (White-rot fungus) (Auricularia delicata (strain TFB10046)) (see paper)
A0A0P1DJE3 Arylacetonitrilase (EC 3.5.5.5) from Auricularia delicata (see paper)
27% identity, 78% coverage

DVU1164 aliphatic amidase from Desulfovibrio vulgaris Hildenborough
24% identity, 67% coverage

SS1G_10281 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
25% identity, 84% coverage

A0QQY9 D-inositol-3-phosphate glycosyltransferase (EC 2.4.1.250) from Mycolicibacterium smegmatis (see paper)
MSMEG_0924 hydrolase, carbon-nitrogen family protein from Mycobacterium smegmatis str. MC2 155
28% identity, 97% coverage

t3054 possible hydrolase from Salmonella enterica subsp. enterica serovar Typhi Ty2
30% identity, 70% coverage

jhp1159 ALIPHATIC AMIDASE from Helicobacter pylori J99
23% identity, 70% coverage

BUP1_RAT / Q03248 Beta-ureidopropionase; Beta-alanine synthase; N-carbamoyl-beta-alanine amidohydrolase; EC 3.5.1.6 from Rattus norvegicus (Rat) (see 2 papers)
24% identity, 65% coverage

GLRG_10235 carbon-nitrogen hydrolase from Colletotrichum graminicola M1.001
23% identity, 39% coverage

NIT_MACPH / K2QXC4 Arylacetonitrilase; NitMp; EC 3.5.5.1; EC 3.5.5.5 from Macrophomina phaseolina (strain MS6) (Charcoal rot fungus) (see paper)
K2QXC4 Arylacetonitrilase (EC 3.5.5.5) from Macrophomina phaseolina (see paper)
34% identity, 34% coverage

New Search

For advice on how to use these tools together, see Interactive tools for functional annotation of bacterial genomes.

Statistics

The PaperBLAST database links 789,361 different protein sequences to 1,256,019 scientific articles. Searches against EuropePMC were last performed on January 10 2025.

How It Works

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), BioLiP, CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, the Fitness Browser, and a subset of the European Nucleotide Archive with the /experiment tag. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

To build the database, we query EuropePMC with locus tags, with RefSeq protein identifiers, and with UniProt accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use queries of the form "locus_tag AND genus_name" to try to ensure that the paper is actually discussing that gene. Because EuropePMC indexes most recent biomedical papers, even if they are not open access, some of the links may be to papers that you cannot read or that our computers cannot read. We query each of these identifiers that appears in the open access part of EuropePMC, as well as every locus tag that appears in the 500 most-referenced genomes, so that a gene may appear in the PaperBLAST results even though none of the papers that mention it are open access. We also incorporate text-mined links from EuropePMC that link open access articles to UniProt or RefSeq identifiers. (This yields some additional links because EuropePMC uses different heuristics for their text mining than we do.)

For every article that mentions a locus tag, a RefSeq protein identifier, or a UniProt accession, we try to select one or two snippets of text that refer to the protein. If we cannot get access to the full text, we try to select a snippet from the abstract, but unfortunately, unique identifiers such as locus tags are rarely provided in abstracts.

PaperBLAST also incorporates manually-curated protein functions:

Except for GeneRIF and ENA, the curated entries include a short curated description of the protein's function. For entries from BioLiP, the protein's function may not be known beyond binding to the ligand. Many of these entries also link to articles in PubMed.

For more information see the PaperBLAST paper (mSystems 2017) or the code. You can download PaperBLAST's database here.

Changes to PaperBLAST since the paper was written:

Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.

Secrets

PaperBLAST cannot provide snippets for many of the papers that are published in non-open-access journals. This limitation applies even if the paper is marked as "free" on the publisher's web site and is available in PubmedCentral or EuropePMC. If a journal that you publish in is marked as "secret," please consider publishing elsewhere.

Omissions from the PaperBLAST Database

Many important articles are missing from PaperBLAST, either because the article's full text is not in EuropePMC (as for many older articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an article that characterizes a protein's function but is missing from PaperBLAST, please notify the curators at UniProt or add an entry to GeneRIF. Entries in either of these databases will eventually be incorporated into PaperBLAST. Note that to add an entry to UniProt, you will need to find the UniProt identifier for the protein. If the protein is not already in UniProt, you can ask them to create an entry. To add an entry to GeneRIF, you will need an NCBI Gene identifier, but unfortunately many prokaryotic proteins in RefSeq do not have corresponding Gene identifers.

References

PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.

Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.

Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.

UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.

BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.

The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.

CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.

The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.

The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.

REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.

Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory