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BLAST against PDB

Comparing PDB to 59 a.a. (MKVKSAAKKR...) (59 a.a., MKVKSAAKKR...)

11 hits were found against non-redundant PDB (which was clustered at 80% identity)

7ood 1 Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol- treated cells
100% identity, 100% coverage of query, 117.0 bits, E = 3e-27

8qpp 3 Large ribosomal subunit protein bL35
58% identity, 100% coverage of query, 64.3 bits, E = 2e-11

4wce 3 The crystal structure of the large ribosomal subunit of staphylococcus aureus
56% identity, 100% coverage of query, 58.9 bits, E = 8e-10

5myj B7 of 70S ribosome from Lactococcus lactis
52% identity, 92% coverage of query, 50.4 bits, E = 3e-07

7jil e 50S ribosomal protein L35
53% identity, 93% coverage of query, 48.5 bits, E = 1e-06

8fmw Ag 50S ribosomal protein L35
41% identity, 100% coverage of query, 46.2 bits, E = 6e-06

7unr 7 50S ribosomal protein L35
49% identity, 93% coverage of query, 45.4 bits, E = 1e-05

7nhk 7 50S ribosomal protein L35
51% identity, 80% coverage of query, 42.0 bits, E = 0.0001

5v7q 3 Cryo-em structure of the large ribosomal subunit from mycobacterium tuberculosis bound with a potent linezolid analog
40% identity, 98% coverage of query, 40.4 bits, E = 0.0003

7qgh q 50S ribosomal protein L35
46% identity, 88% coverage of query, 40.4 bits, E = 0.0004

8rd8 dh Large ribosomal subunit protein bL35
49% identity, 86% coverage of query, 39.7 bits, E = 0.0005

To find additional similar structures, try the "Find Similar Assemblies" links at RCSB.

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory