PaperBLAST – Find papers about a protein or its homologs

 

BLAST against PDB

Comparing PDB to 62 a.a. (TTNADRRKAA...) (62 a.a., TTNADRRKAA...)

3 hits were found against non-redundant PDB (which was clustered at 80% identity)

1mdy A Crystal structure of myod bhlh domain bound to dna: perspectives on DNA recognition and implications for transcriptional activation
100% identity, 100% coverage of query, 123.0 bits, E = 3e-29

8osb B Twist1-tcf4-alx4 complex on specific DNA
38% identity, 90% coverage of query, 42.4 bits, E = 9e-05

2ypa A Structure of the scl:e47:lmo2:ldb1 complex bound to DNA
42% identity, 98% coverage of query, 39.3 bits, E = 0.0008

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory