PaperBLAST – Find papers about a protein or its homologs

 

BLAST against PDB

Comparing PDB to 70 a.a. (MSDKMKGQVK...) (70 a.a., MSDKMKGQVK...)

20 hits were found against non-redundant PDB (which was clustered at 80% identity)

3i2z B Structure of cold shock protein e from salmonella typhimurium
88% identity, 96% coverage of query, 120.0 bits, E = 2e-28

2l15 A Solution structure of cold shock protein cspa using combined nmr and cs-rosetta method
77% identity, 100% coverage of query, 111.0 bits, E = 2e-25

5o6f A Nmr structure of cold shock protein a from corynebacterium pseudotuberculosis
69% identity, 93% coverage of query, 92.8 bits, E = 6e-20

1csp A Crystal structure of the bacillus subtilis major cold shock protein, cspb: a universal nucleic-acid binding domain
67% identity, 91% coverage of query, 85.5 bits, E = 8e-18

5xv9 A Solution structure of cold shock protein from colwellia psychrerythraea
62% identity, 93% coverage of query, 83.6 bits, E = 4e-17

1g6p A Solution nmr structure of the cold shock protein from the hyperthermophilic bacterium thermotoga maritima
61% identity, 94% coverage of query, 82.8 bits, E = 6e-17

2lxj A Backbone 1h, 13c, and 15n chemical shift assignments for cold shock protein, lmcsp with dt7
66% identity, 89% coverage of query, 82.4 bits, E = 9e-17

3cam A Crystal structure of the cold shock domain protein from neisseria meningitidis
62% identity, 90% coverage of query, 82.0 bits, E = 1e-16

2mo0 A Backbone 1h, 13c, and 15n chemical shift assignments for cold shock protein, tacsp
55% identity, 93% coverage of query, 73.9 bits, E = 3e-14

3a0j A Crystal structure of cold shock protein 1 from thermus thermophilus hb8
55% identity, 93% coverage of query, 72.0 bits, E = 1e-13

2lss A Solution structure of the r. Rickettsii cold shock-like protein
45% identity, 96% coverage of query, 62.4 bits, E = 9e-11

6lmr A Solution structure of cold shock domain and ssdna complex
44% identity, 97% coverage of query, 62.0 bits, E = 1e-10

9ju4 B Crystal structure of the thermotoga maritima cold shock protein mutant est#13 in complex with aacest
52% identity, 93% coverage of query, 61.2 bits, E = 2e-10

2bh8 A Combinatorial protein 1b11
83% identity, 50% coverage of query, 61.2 bits, E = 2e-10

8tg0 A Solution nmr structure of the cold shock domain of the arabidopsis thaliana glycine-rich protein atgrp2
58% identity, 61% coverage of query, 59.7 bits, E = 6e-10

4a4i A Crystal structure of the human lin28b cold shock domain
44% identity, 90% coverage of query, 57.4 bits, E = 3e-09

2mqh A Solution structure of the chlamydomonas reinhardtii nab1 cold shock domain, csd1
53% identity, 93% coverage of query, 55.5 bits, E = 1e-08

8ops B Human terminal uridylyltransferase 7 (tut7/zcchc6) bound with pre- let7g mirna and lin28a - complex 1
43% identity, 89% coverage of query, 55.1 bits, E = 1e-08

3aqq A Crystal structure of human crhsp-24
48% identity, 69% coverage of query, 48.9 bits, E = 9e-07

2ytx A Solution structure of the second cold-shock domain of the human kiaa0885 protein (unr protein)
36% identity, 96% coverage of query, 40.0 bits, E = 0.0004

To find additional similar structures, try the "Find Similar Assemblies" links at RCSB.

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory