PaperBLAST – Find papers about a protein or its homologs

 

BLAST against PDB

Comparing PDB to 74 a.a. (DARRKRRNFS...) (74 a.a., DARRKRRNFS...)

9 hits were found against non-redundant PDB (which was clustered at 80% identity)

1b72 B Pbx1, homeobox protein hox-b1/DNA ternary complex
93% identity, 99% coverage of query, 144.0 bits, E = 1e-35

3k2a A Crystal structure of the homeobox domain of human homeobox protein meis2
49% identity, 69% coverage of query, 61.6 bits, E = 1e-10

1x2n A Solution structure of the homeobox domain of human homeobox protein pknox1
34% identity, 80% coverage of query, 53.1 bits, E = 5e-08

6fqp A Crystal structure of tale homeobox domain transcription factor tgif1 with its consensus DNA
39% identity, 84% coverage of query, 52.8 bits, E = 6e-08

4egc A Crystal structure of mbp-fused human six1 bound to human eya2 eya domain
44% identity, 80% coverage of query, 49.7 bits, E = 6e-07

2dmn A The solution structure of the homeobox domain of human homeobox protein tgif2lx
33% identity, 85% coverage of query, 48.5 bits, E = 1e-06

1akh A Mat a1/alpha2/DNA ternary complex
46% identity, 73% coverage of query, 42.0 bits, E = 0.0001

5zjq A Structure of abdb/exd complex bound to a 'red14' DNA sequence
38% identity, 97% coverage of query, 41.6 bits, E = 0.0001

8ejo A Crystal structure of the homeodomain of platypus sdux in complex with DNA
41% identity, 78% coverage of query, 40.8 bits, E = 0.0002

To find additional similar structures, try the "Find Similar Assemblies" links at RCSB.

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory