PaperBLAST – Find papers about a protein or its homologs

 

BLAST against PDB

Comparing PDB to LRK54_RS03535 (61 a.a., MASKDINNQS...)

10 hits were found against non-redundant PDB (which was clustered at 80% identity)

7unr 1 50S ribosomal protein L29
53% identity, 93% coverage of query, 60.8 bits, E = 2e-10

2j28 X Model of e. Coli srp bound to 70s rncs
55% identity, 98% coverage of query, 52.4 bits, E = 8e-08

6v39 X 50S ribosomal protein L29
42% identity, 98% coverage of query, 45.8 bits, E = 8e-06

3j3v X Atomic model of the immature 50s subunit from bacillus subtilis (state i-a)
39% identity, 93% coverage of query, 45.4 bits, E = 9e-06

8crx x 50S ribosomal protein L29
40% identity, 93% coverage of query, 45.4 bits, E = 9e-06

5ngm AW structure of the 70S ribosome composing the S. aureus 100S complex
38% identity, 92% coverage of query, 44.3 bits, E = 3e-05

5myj B1 of 70S ribosome from Lactococcus lactis
42% identity, 87% coverage of query, 41.6 bits, E = 0.0001

5v7q Y Cryo-em structure of the large ribosomal subunit from mycobacterium tuberculosis bound with a potent linezolid analog
48% identity, 75% coverage of query, 40.8 bits, E = 0.0003

7qca LHH Ribosomal L29 protein
36% identity, 100% coverage of query, 40.0 bits, E = 0.0005

1nkw W Crystal structure of the large ribosomal subunit from deinococcus radiodurans
34% identity, 92% coverage of query, 39.3 bits, E = 0.0007

To find additional similar structures, try the "Find Similar Assemblies" links at RCSB.

Or try another search

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory