PaperBLAST – Find papers about a protein or its homologs

 

BLAST against PDB

Comparing PDB to MCAODC_10750 (73 a.a., MTTQSSPVIT...)

11 hits were found against non-redundant PDB (which was clustered at 80% identity)

4il0 A Crystal structure of glucdrp from e. Coli k-12 mg1655 (efi target efi- 506058)
96% identity, 100% coverage of query, 144.0 bits, E = 2e-35

3n6h A Crystal structure of mandelate racemase/muconate lactonizing protein from actinobacillus succinogenes 130z complexed with magnesium/sulfate
73% identity, 100% coverage of query, 115.0 bits, E = 8e-27

4g8t A Crystal structure of a glucarate dehydratase related protein, from actinobacillus succinogenes, target efi-502312, with sodium and sulfate bound, ordered loop
66% identity, 100% coverage of query, 107.0 bits, E = 2e-24

4hn8 A Crystal structure of a putative d-glucarate dehydratase from pseudomonas mendocina ymp
61% identity, 99% coverage of query, 89.0 bits, E = 8e-19

4hyr A Structure of putative glucarate dehydratase from acidaminococcus sp. D21 with unusual static disorder
60% identity, 92% coverage of query, 87.8 bits, E = 2e-18

3p0w A Crystal structure of d-glucarate dehydratase from ralstonia solanacearum complexed with mg and d-glucarate
63% identity, 93% coverage of query, 75.9 bits, E = 7e-15

1bqg A The structure of the d-glucarate dehydratase protein from pseudomonas putida
68% identity, 85% coverage of query, 69.7 bits, E = 6e-13

3nxl A Crystal structure of glucarate dehydratase from burkholderia cepacia complexed with magnesium
59% identity, 93% coverage of query, 66.2 bits, E = 5e-12

3mzn A Crystal structure of probable glucarate dehydratase from chromohalobacter salexigens dsm 3043
45% identity, 92% coverage of query, 63.2 bits, E = 5e-11

3vdg A Crystal structure of enolase msmeg_6132 (target efi-502282) from mycobacterium smegmatis str. Mc2 155 complexed with formate and acetate
38% identity, 89% coverage of query, 39.7 bits, E = 0.0005

3vc5 A Crystal structure of enolase tbis_1083(target efi-502310) from thermobispora bispora dsm 43833 complexed with phosphate
40% identity, 71% coverage of query, 39.3 bits, E = 0.0008

To find additional similar structures, try the "Find Similar Assemblies" links at RCSB.

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory