PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200007 (656 amino acids)

SeqID: 200007 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2829633: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200007
MTKPLLEVSACYRSFQAGEQQLTVLKDINLSIARGEMVAIVGASGSGKSTLMNILGCLDK
PSKGAYFIDGQDTSQMDVDELAKLRREHFGFIFQRYHLLGDLNAVGNVEVPAVYAGKDRL
ERRDRAESLLSRLGLGERLDHKPNQLSGGQQQRVSVARALMNGGDVILADEPTGALDSHS
GEEMMRLLQELHREGHTIIIVTHDMHVAQHADRIIEIKDGVIISDEPNLASQTAVKAQVD
MSLAKPSGATRVAAWDRYAEALKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGS
QREILKSISSMGTNTIDIRPGLGFGDRRSARVRTLTASDANALKNLPYVDSVTPSISSSV
TVRLGNKAVTASVNGVGPEFFRVRGYELAQGQFWDDDSVDALAQDAVIDDNTRKQLFPDS
TGAMGSVIGQVIFLGDLPVRIIGVTKPKESAFGNSDALNVWVPYTTVSGRMVGKKYLDGI
TVRLDESVPSNAAEQGIITLLKMRHGTQDFFTINTDTIRQNIEKTTATMTLLISAIAVIS
LVVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAY
LIGVVFAQAGGSFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVEALARE