PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200044 (452 amino acids)

SeqID: 200044 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 399339: Na(+)-linked D-alanine glycine permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200044
MNFQALLSSLNGIVWGPITLCLLVGTGVYLTTRLKLIQVFRLPMALSLLFKPAKGHGDLS
SFAALCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYRTT
DARGQIAGGPMYYIERGLGLRWMAKLFALFGVGVAFFGIGTFAQVNAISDALTIAFDVPT
WTTALVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILLGFAEAILPALQLVV
ESAFTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLVSM
TGTFFDTIIICTMTGLVLIITGVWSGDTAGAAMTSAAFSLGGSAAIGQYLVTIALVCFAF
TTILGWHYYGERCWYYLVGERGLRAYQIVFLGLIAGGAFIKLDVIWLLADTVNGLMAIPN
LIAIIGLRHIIIAETQSYFVRTFTNSTLNPIY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory