PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200162 (391 amino acids)

SeqID: 200162 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230912: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200162
MSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQ
INLVRKSLLERRNLLDLAPSLVKPVAFYIPVYQDSRRNPLTIRAGLSLYALLSEFDPLGR
FVSIPAVHWHRFKGLKLSGLKAVFQYWDAQTDDKLLTQAVARSAQALGAHIYAEAEFLQL
NHLKEQIELSFRHRGEVQQIETKLVINAAGPWVNEVLAHVEPPLAGVEIDWVQGAHLLLD
LPAPEGILYLESCFDKRVIFVMPWYGQMLIGTTETVLTSIDTPPQVTESETQYLLGIYCH
YFPLSPSIEELKTKIVQTYCGVRVLPKQASSAFERPRDTLMQTSISHPRLLCLYGGKLTT
FRSSSAEVLEWIEQKLGKRQPIADIDTLKLT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory