PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 200542 (671 amino acids)

SeqID: 200542 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71159629: P-protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>200542
MQKPQPLNHTREQITQLDNDLLSLLAERRRLSLEVARSKEVDVRPIRDTQREKELLARLV
TAGREKGLDAHYVISLYQSIIEDSVLNQQAYLHGRANPETQKQQYCIAYLGARGSYSYLA
ASRYCQRRQVEMLDLGCQSFDEIVQAVESGHADYGFLPIENTSSGSINEVYDVLQHTSLS
IVGETTIEVSHCLLGKPGSKLSEIKTVYAHPQPISQCSRYLSQHKALRLEYCSSSAEAME
KVNQSPDNSAAAIGSAEGGALYQLESIESGLANQKINQSRFIVVARKAVAVPEQLPAKTT
LIMATGQKAGALVEALLVLKAHQLNMSKLESRPIPGTPWEEMFYLDIDANISSEAMQQGL
KQLERITRFIKVLGCYPCETVTPTQLSNSQLLIEPNTSKAEVLSEVSTKQSPYRYSKAYK
AQASEIHCGPFTIGAGHIGAIAKVTLSKSLLHLESSHAAAHIALSAFEHKIKQLKEVGFQ
AVILEGCQQLASKEAIIPKLRQTLHQYDLLCVIAIEQAADMPLATEHADMLFLTGKQMFN
QALLTQAGTLPIPLFLERNDMASYEEFLAATETILSQGNQQLILCDSGIRTYNNANLPTL
DLASLILIKANSHLPIVINPCYAINEDALVLQTQGIKQLKADGIVLNYALEEDKAHHSLA
LMGEVVRELYR