PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201109 (437 amino acids)

SeqID: 201109 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121462: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201109
MATSLQNKLGLTSKILIGMATGIIFGLILRNLFPDSIFIKDYITDGFLHVIGTIFISSLK
MLVVPLVFISLVCGTCSLSEPSKLGRLGGKTLAFYLFTTVLALVLAVFAAVIVHPGDATL
ANEKLNYVAKEAPSFAQVIIDMMPTNPVQAMSEGNMLQIIIFAVIFGFAIAHLGERGNRI
AQLFDDLNNVIMRVVTLVMQLAPYGVFALMAKLALTLGLETFGSVVKYFFLVLTLLLIHN
FVTYSILLKAFSGLNPLIFIRKMRDVQLFAFSTASSNATLPITIEASEHRLGVDNKIASF
TLPLGATINMDGTAIMQGVATVFIAQVFGIELSLTDYAAVIVTATLASIGTAGVPGVGLI
MLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDCVATVIIAKSEGEFNETVFNNT
QAGKIAPSFDEQVHKID

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory