PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 201781 (1013 amino acids)

SeqID: 201781 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>201781
MLPLLSHQQTLEPVYLAYLDALEQSAYAGDIDKRYSARLVQATDNSVYQFLPQAVLYPKH
QKDIEIALKLAAKAEFVGVTFSARGGGTGTNGQSLTHGLILDVSRYMNRVLEVNPEQGWV
RVEAGVIKDALNDALRPHGFFFSPDLSTSNRATIGGMINTDASGAGSLVYGKTSDHVLAL
RSVLIDGSVLDTRPLDAGVLGDPDNVSDNPLGQKLISSIAQVCRDKREQIEKQFPKLNRF
LTGYDLKHVWNAGLTQFDLSRILTGSEGTLAVITEAKLNITPLPSERAMVNIKYDSFQSA
LRHAPSLVAARATVVETVDSKVLNLAREDIVWHSVSDLIQEVPGKTIDGLNMVEFAGDTA
EVEQKLASLEAVLTEQISRGECGVVGYQVTQDKASIEKIYGMRKKAVGLLGATKGRRKPI
AFAEDTAVPPEKLADYIMEFRALLDSHNLQYGMFGHVDAGVLHVRPALDMCDVEDEKLLR
VISDQVAALTLKYGGLMWGEHGKGVRGQYGPAVFGDELYGVLQEIKGLFDPDNRLNPGKL
VAPKQVGSLAFDVDSTKRGQFDRQIPVAVRDAFPDVMNCNGNGLCFNYSSYSPMCPSFKV
TGDRVQSPKGRAGLMREWLRLLESEGVDVNALAKAKPLGILQRMQNTINAKRDYDYSHEV
MESLKGCLACKACSSQCPVKVDVPKFRAQFFNIYYQRYLRPAKDYLVAGIEDSLPIMAAA
PKLTNFASQNPLSQWVIKKAIGYVDAPALSVPTLKQRLDGHASRGYDLAALQAIPVAERS
KFVLVVQDPFNSFYDAGLVYRFIQLIETLGLKPVLLPFKPNGKPTHIKGFLDKFAKTAQS
SADFLNQVHKLGMPMIGIDPALVLCYRDEYKEVLGANRGSFEVKLANEWLLGILHHIPAK
PMQDKQFTWFSHCTESTAKPNTANEWTKIFSHFGTKLTAVNLGCCGMAGTYGHEAENLER
SKALFDMSWKNTLSKMDQSQVLVSGYSCRSQVKRFAGYKPKHPLEALLELVNS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory