PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 202141 FitnessBrowser__MR1:202141 (574 amino acids)

SeqID: 202141 FitnessBrowser__MR1:202141
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>202141 FitnessBrowser__MR1:202141
MTLKTFNQVTQADRANLASSQQTFARSHTLKATLVYHSDPLRLYQHITEDAPHTMLLESA
EINSKENLKSMVMTHAALMIRCDGYRLRFSALTDNGASLLTPIEQFFMARSCHTQCQRNG
QHLVVTLQKDTELKDEDARLKSTSPLDGLRLFVKHIDCGAHTDSQSKPAFEDLFLGGVLS
YDLIDTVEPLPEAPNGANDCPDYLFYLAETLILIDHKQKQAEIITHNFSESAEQHSEVTQ
ALAERVENIRAQCEALAKSATPAPALVGITATEQVNVSDEAFKQTVIDLKEHIIAGDIFQ
VVPSRSFSLPCPNTLGAYRALRLTNPSPYMFYFRGNDFTLFGASPESALKFDSSNNQVEV
YPIAGTRKRGKTASGEIDFDLDSRIELELRLDKKELSEHLMLVDLARNDIARISQSGSRK
VAELLKVDRYSHVMHLVSRVTGQLRQDLDALHAYQACMNMGTLVGAPKVRASQLVRQAEK
TRRGSYGGAVGYLNALGDMDTCIVIRSAFVKDGVAHIQAGAGVVFDSDPQSEADETRQKA
QAVISAIKMGAGLAGINNCNEHTSTKVSTAAQQG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory