PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 202283 (309 amino acids)

SeqID: 202283 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>202283
MPTQSILLTGATGFVGQQILRQLPQDTRVFGRTKPARDCHFFAGELTANTDYRSALSGVD
VVIHCAARAHVMNETANNAAQLYQEVNTLVTLALAEQAAAAGVKRFIFISTIKVNGEATI
AGQLFRASDARQPLDHYGESKAKAEIGLFDIARKTEIEVVIIRPPLVYGPNVKANFATML
NLAKKNLPLPFGAIHNKRSMVALDNLVDLIVTCIEHPNAANQIFLVSDDQDVSTTELLKL
MTGAAGKKPRLLPVPMAWLILAGKVTGNQAIIDRLCGNLQVDITHTKNTLSWQPPITVEE
GVRRCFVKE