PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 202759 (532 amino acids)

SeqID: 202759 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>202759
MAYDQESQLELGKYSSLIDLIERTSQRFGDKTAYACLGKNSSFNEIERDSRYFAAYLQNN
TNLKPGDRIAIQLPNITQFVIAAYGALRAGLILVNTNPLYTERELIHQFNDSGAKALVVL
SDLLPTLAKVVATTPIELVISTHPLDLIDPQVQPKTGLKNVEFCHVLQQGALLPFTRFVP
TLSDLAALQYTGGTTGLSKGAMLTHGNMLANAAQVKSRIGSVISEGEDIFVAPLPIYHIY
AFMVNLVLYFECGGCSVLIPNPRDINGLIKTLAKYPFTGFAGLNTLFVALCHQPEFKALN
FSHLKITISGGTALTAAAANLWQQTTGNTISEGYGLSETSPVISLNAPGYQKIGTIGKPV
LGTEVKLLDESGNEVTQGTAGELAARGPQVMLGYWNNPQETANVMTPDGFFKTGDIAILN
EEGFHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNIIECAVVGVKDDHSGEAVKAFIVL
KDDSQDHEKIKTAILNFCREQLTAYKLPKQIEFMSQLPKSTVGKILRRELKN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory