PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 203139 (797 amino acids)

SeqID: 203139 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    OuterMembrane          9.49
    Extracellular          0.38
    Periplasmic            0.09
    Cytoplasmic            0.03
    CytoplasmicMembrane    0.01
  Final Prediction:
    OuterMembrane          9.49

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>203139
MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKTTNFLYKLLSLRDSNQ
LWQEELQVLISYQQGLIEQLLSNEQARDLRERLTTDKAQLISLLSLDVRNDYQISHVVSF
GERWSARLMAALLRESGVAASHVDACSILVADEAAVPQIRVQESRAKVQALLAAHPNERL
VITGFICANERGDTLLLGRNGSDFSASLIASLADIERVTIWTDVEGVFNADPNKINDAKL
LKSMSLAEADRLARLGSPVLHSRTLQPLFNTEVSLAVRSSYASHTDFTLIAPHSSSASAP
VVTNLNAVVLFGFKIAGDVASLLDQLVEAGLTPLAHWVSAHQRLELAYTAENQKQVQKLL
DAQAEALGIRDLQINTELGLVALVSADAEHYRRSFARLLSRDAKPLFSGDLSLVTLVPQS
QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVKLFKSVSPSLNQELEAQVELVGLVT
SSKALIKSKGVDLQSWQQEFDNEATPWQYEHLFEQLEQLNCDELIALDISASASLTLQYP
EFFERGIHMVSANKLAGSGPLPFYRELKEQLGYRRLFWRYNASCGAGLPIQHALNDLRNS
GDSVEAVGGIFSGTLCWLFEKYDTSKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI
LAREIGLEIELEDIELRSLVPAHLADIPLEQFLARIGELDDELLQQYGAAAEQNKVLRYV
ASLDNSGAVLKAEVGLQWIDASHPYANLTPGDNVFVIRSAFYQGNPLIIRGPGAGREVTA
AAVQSDLTQICRDLLQE