PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 206728 (261 amino acids)

SeqID: 206728 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 77416667: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>206728
MNNSRRRFLKIASLSVFGLGAKGVLDVAAGTTPDAAALTGKYEDGATALKAKRWAMVIDM
RKFTSPEDYSRVIEACHSIHNVPSIEGNQEIKWLWTDTYEATFPDDMNPHLSQEVLERRY
LLLCNHCENPPCVRVCPTKATFKRADGIVVMDYHRCIGCRFCMAGCPYGARSFNFGDPQP
HIKAINPKFPARTRGVVEKCTFCSERLAVGQLPACVEASNGAILFGDLDDPNSPVRKALN
ENYSIRRKPSVGTQPGVYYIV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory