PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 206897 (564 amino acids)

SeqID: 206897 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>206897
MPWLQSYDKDVPARIDYEVAPLFAFLDEAAERHPKQTAIIFRNYKVSYAKLRLLAERFAA
NLRAQGVLPGDRVSVMLPNVPQAIIAFWGLLKAGCTVVMTNPLYMEKELVHQIHDSGAEY
MIALDLVWPKIEPLRDRLGIRKFFITRISDALGFPLNLLYRFKAKREGTWRDVPFDGETV
IPWKTLFKKKEGYSAKVENPREALALLQYTGGTTGISKGVMLTHYNLSVNVQQIKAILGE
STRMRHTFLGLMPYFHVYGLTTCLTLPTALGATIIPFPRYVPRDVLVGIDKHKPTIFPGA
PSIYISLMQQKDVGEFDLKSIKYCISGSAPMPLEHIRRFHELTGAQVIEGFGLTEASPVT
HLNPIHGVQKPGSIGVPFPDTEARVVDMEVGLVPLPPGKIGELIIRGPQVMQGYLNRPDE
TANTLRNGWLYTGDIATMDEDGYFFIVDRKKDMIIVGGYNVYPREIDEVLHEHPKVKEAV
TVGVPHATRGEIIKAYIVPREGVKLTKAEIVAHCREQLANYKVPKQVEFRNELPKTIVGK
VLRRILRAEEEERLKNAPAGNGED