PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 207007 (906 amino acids)

SeqID: 207007 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597575: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>207007
MIKRMVTINGAPRMAITRPDTTLATYLRESLGLTSVKVGCGQGHCGSCNVIVDGKLVRSC
SYKMSRLTEGATITTLEGIGTPDNLHPLQVAWMAHGAAQCGFCSPGFIVSAKALIDTNPK
PSRDDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVVRGEMKVDDLLYRIPADGRIWGTKY
PRPSALAKVTGTLDFGADLGIKMPEETLRCALVQAEASHAKILGIDTSEAEKMPGVFKVV
THKDIKGKNRITGLITFPSNKGDGWDRPILCDEKVFQYGDAIAIVCADTEEHAKAAAAAV
KVDLEVLPAYMSAPAAMADDAMEIHPGTPNVYFEQHLVKGPETKPIFDKADVVVEDDFYV
GRQPHMPIEPDVGFAFFNEDGKLCIHSKSIGLHLHLYMIAPGLGIEPDNIIMVQNPTGGT
FGYKFSPTMEALVGAAAMATGRPVFLNYSWYQQQTYTGKRSPFFINLRYAATREGKLLAM
ESDWSVDHGPYSEFGDLLTLRGAQFIGAGYDIPSIRGLGRTVCTNHAWGSAFRGYGSPQS
EFASEVLMDELAEKLGIDPLELRYRNVYREGATTPTGQVPEVLSLPELLDTARPRYLAAK
EKAARESTAEVKKGVGISVGVYGCGLDGPDTAEIAVELNEDGTVTIFATWHDHGQGADMG
TLGTAHEALRPLGIAPENIRLVLNDTAVCPNAGPAGGSRSQVVVGRAIKAGCELLLGGMR
KADGTFRTYAEMRDEKIATRYSGKWSAPCTDCNAEGQGSPFAVYMYGVFLAEVSVELATG
KTTVDKMTLVADIGKIVNRLTVDGQLYGGIAQGIGLALSEDFEDIKKHSTMPGAGFPYIK
QIPDEIDLVYVEVPRPEGPFGAGGVGELPLTCPHAAIINAIHNACGVRVTRLPALPEKVL
AGLQGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory