PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 207249 (253 amino acids)

SeqID: 207249 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>207249
MQATICITGATAGFGEACARRFAAEGCRLIITGRRKERLEKLAAELGEDRCLPLVFDVRD
RKAVEAAFAALPEAFANVDVLINNAGLALGLEPAHRASLEDWETMIDTNLKGLMYCTRAL
LPGMVERGKGHVVNLGSIAGSYPYPGGNTYGATKAFVMQFSRNLRADLHGTGVRVTNIEP
GLAESEFSVIRFKGDASKAAGVYKGTEPLRPVDIADIIHFAVTCPAHVNINRIEVMPTCQ
SFGALPVHRTEAD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory