PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208241 (432 amino acids)

SeqID: 208241 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208241
MEFFDIAETWNRDEIRQAQLVRLRNTVEQAMRSSFYGATLRKAGITPDSIRSLDDLRRIP
FTTKDDLRNQYPDGLNCVPRTEMVRMHASSGTTGSPTVVYHTQSDLNAWADLMARCLHMV
GVRRDDVFQNMTGYGLFTGGLGLHYGAERLGCLTIPAGPGNTKRQVKLMRDFRTSVVHII
PSYALYLAAAVEEGGEDPHALPPRIAVIGAEPHTEEARRRIEEMLGLKAFNSYGLSEMNG
PGVAFECTEQNGMHVWEDAYIAEIIDPATGEPVPDGEVGELVMTTLCRRGMPVLRYRTRD
LTRFLPGECPCGRVHRRLDRMVGRADDMLIIKGVNIYPMQIEQVLMAFPEVGQNYLIVLE
REEFIDQIKVKVELRDEAFVEDMRVLQGLQKAIARRLKDEILVTPRVELVQNNSLPKAEG
KAQRVLDLREKP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory