PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208332 (591 amino acids)

SeqID: 208332 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208332
MLAIIFIITFQTLYRYIGVHMHEGASAAIWTEEMARFIFIWISYLALPVAIRNRSSIRVD
IIYDRLPKRFQEMSWVVVDLCFLVLAGTVLWQSLDLIKMQIEFPQTTPALQISYYIPYLV
LPVSFGLMALRLVEDLFAQARVCGLKDTLLALAACAALAAPVMLAEDLEPLPVLFGYFAI
FLAVGVPIAIGLGLAALATIIAAGTLPIEYIAQVAFTSIDSFPIMAIPFFIAAGVFMGAG
GLSRRLLTLADEMLGSLHGGMALATIGTCMFFAAISGSGPATVAAIGSLTIPAMVERGYD
KYFSAAVVAAAGAIGVMIPPSNPFVVYGVSAQVSIGKLFLGGIVPGVLTGLALMVYSYWY
SKKRGWKGEVRVRNLRTFTRALWDAKWALMVPVIVLGGIYGGIMTPTEAAALAAFYGLFV
GCFIHRELNCGSLYDCIVEAAGTSAVVIVLMAMATIFGNIMTIEEVPTAIATAMLNLTEN
KIAILMLINVLLIVIGTFMEALAAIVILTPILLPIVLKVGVDPVHFGVIMVVNLAIGFVP
PPVGVNLFVASGVAHAKIEHLSKVVMPLIAIMIGVLLLITYVPALPMFLAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory