PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208543 (704 amino acids)

SeqID: 208543 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596032: phosphate acetyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208543
MSNNLYITATESKSGKSAVVLGMMQLLLRDVRKVAFFRPIINQASTDVRDHDINLILRHF
GLDIAYEDTYAYSLQDARELINNGQHATLLDNILKKYKKLEDAYDFVLCEGTDFLGKDAA
FEFELNADIAANLGCPVMVVANGQQKAARELIASTQLTIDLLDEKGLDVVTAVINRATVT
EAEREEIIKSLECKVNCSNPLAVYVLPEESTLGKPTMNDVKKWLGAQVLYGHGRLDTLVD
DYIIAAMQIGNFLDYVSQGCLVITPGDRSDIILSSLASRLSTAYPDISGLLLTGGLEPAA
NVHRLIEGWTGVPIPILSVKDHTYKTIQTLNELYGKIEPDNDRKINTALALFERHIDSSE
LGSRLINRKSSRITPKMFEFNLIEKAKRNRMRIVLPEGAEERILRAADILVRREVADIIL
LGDANTVGSRIGDLGLDMDGVQIVQPNLSPKFDEYVAAYHECRKKKGISMEQARDMMNDP
TYFGTMMVHKGDADGMVSGAINTTAHTIRPAFEFIKTKPGVSIVSSVFLMCLKDRVLVFG
DCAVNPNPTAEQLAEIAISASHTARIFGVDPRVAMLSYSTGSSGKGADVEKVIEATRIAK
ERAPELLLEGPLQYDAAIDMDVARTKLPGSTVAGQATVFIFPDLNTGNNTYKAVQRAAGA
VAIGPVLQGLNKPVNDLSRGCTVADIVNTVAITAIQAQAEKGLI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory