PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208651 (546 amino acids)

SeqID: 208651 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121408: Aerobic glycerol-3-phosphate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208651
MSRRQILERLQADKTFDLLIVGGGATGCGVALDAATRGLDVALVERDDFAQGTSSKSTKL
VHGGVRYLEKAILKADKEQFALVHEGLRERGYLLRNAPHLAHPVQLMTPVDSWKDAGYLF
AGLTMYDLLAGRLGLGHSRFVTRSKAQRLFPTLRLGKAKGAVLYYDGQFNDARMAVTLAR
TAALHGATCANHVEVIDLVRENGRLCGAVLRDVNSGETWQVRARGIINATGPFSDGLRRM
DDQNACDILKVSSGIHLVIDPGHTPPHLGLMVPRTDDGRVLFMIPWQGHVVFGTTDEPVD
ISRDPVPTQEDIDYLLNYAGRYLSRPLSRDDVRAAWCGLRPLVFEADKSCTQELARTHVI
EVSPGGLLTITGGKWTSYRRMAEDTIDRADAAFELGLQRPCVTRDLRVIGSRGFVRGAHA
EMARDFGVDPALARGLFELHGDETPLILTLAREEGLMDRLHPAHNYIGAQVAFAVRHEMA
VHLTDVMVRRLPLGLVDVQHTLEASAPAADIMAQELGWDAATRQREMEALAAYLAAWRPA
PDAATT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory