PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208820 (547 amino acids)

SeqID: 208820 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208820
MNAATLFVRCLEAEGVDHIFGIPGEENLAFLEALRTSSIRLVLTRHEQAAGFMAATYGRL
TGRPGVCLSTLGPGATNLVTAVAYARLGGMPLIVITGQKPIKHSKQGRFQILDVVRMMEP
ITKSTRQVASGSAIPSLVREAFRLAAKEKPGPVHIELPEDIAAEEVATTPHTPSLVRPAQ
ADPELVGEAARRIRKAKRPLLLMAAGANRHDVCGHLRRFIDTTGMFFFSTQMGKGAVDQR
HPRSLGTAALSDHDYLHCAIERADCIVNVGHDVVEKPPFFMHRDDGRTVIHVNVFPAQVD
DVYFPQLEVVGDIGESLQLMADIVGRCPGADDDYLRRIKEHIDAHVYATGLTNSFPPTPQ
SIVSEVREAMPENGVLALDNGMYKLWFARNYRAYAPNTLLLDNALATMGAGLPSALAVAL
LRPGTPVAALCGDGGFMMNSQELETAVRLGVDLTVMVLRDDGYGMIKWKQAGMELPVHGL
DFGNPDFVRYAESYGATGHRVSAPDGLRQTLRRCLATPGVHLIEVPVDYSENEKVFIEEL
RSKTCLL