PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 208898 (785 amino acids)

SeqID: 208898 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>208898
MRTHNLGFPRIGAGRELKKAVEGYWKGRVSRHALEGEAARLRACHWAMQRDAGIDVVPVG
DFALYDHMLDLTLMLGAIPPRFSPSGAAASPAGTGQDIDLMFRMARGEAGLSPVAPLEMT
KWFDTNYHYLVPELDADTAFAPDASPLVAQLREAQDAGFTPKAVLPGPLTWLWLARSVDG
SDRFALLPALCDAYATLLRELTSACPPACPRGYSSGGLMVQLDEPVLALDLPQTVRDLFP
AVYTRLRAAVPDATLMVASYFAPCADNLPVALNLPVDVLHLDLVRGRDDLDAALQVLGAG
EGTPGLALSLGVVDGRNVWCADIDAAVNLVRRAADSLGEDRVWVAPSCSLLHCPVDLGSE
RELDPEVARWLAFARQKCAEVRLVAEVVRGVYGPSTAASLEANREVRRQRAVSPRIHDPA
VASRLAAVTSDMEHRTSPYAERIVAQRAALHLPTLPTTTIGSFPQTPDIRAARRALRDGS
LTQDAYEAAMRDALAMMVREQEALGLDVLVHGEPERNDMVEYFGGLLQGFCITSDGWVQS
YGTRCVKPPLLYGDVSRPEPMTVAWSAYARSLTARPMKAMLTGPVTIACWSFVRDDISRE
TVLRQLALALRDEVADLESAGLAVVQVDEPALREGLPLRRAAQEAYLDAAVRAFRLATSG
VADATQLHTHMCYCDFHDIIDRIAGMDADVISLEASRSRMELLDVFATHGYPNEVGPGVY
DIHSPRVPSVDEMEALLLRAAAVLPVDRLWVNPDCGLKTREWPETRAALANMVEAARRVR
ARLDA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory